Wall clock time and date at job start Tue Mar 31 2020 00:29:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31410 * 1 3 3 Si 1.86798 * 120.00188 * 2 1 4 4 H 1.48505 * 109.47248 * 269.99919 * 3 2 1 5 5 H 1.48501 * 109.47236 * 29.99624 * 3 2 1 6 6 H 1.48501 * 109.47184 * 150.00107 * 3 2 1 7 7 C 1.38953 * 120.00123 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99499 * 359.97438 * 7 2 1 9 9 N 1.37092 * 120.00396 * 180.02562 * 7 2 1 10 10 C 1.34779 * 120.00294 * 180.02562 * 9 7 2 11 11 O 1.21288 * 119.99737 * 359.97438 * 10 9 7 12 12 C 1.50700 * 120.00141 * 179.97438 * 10 9 7 13 13 H 1.09005 * 110.88713 * 58.81754 * 12 10 9 14 14 C 1.54740 * 110.97169 * 294.99513 * 12 10 9 15 15 C 1.51682 * 102.54813 * 217.66258 * 14 12 10 16 16 C 1.47655 * 125.86535 * 195.38973 * 15 14 12 17 17 C 1.39629 * 120.13347 * 0.03028 * 16 15 14 18 18 C 1.37945 * 119.89935 * 179.97438 * 17 16 15 19 19 C 1.38345 * 120.17341 * 359.97438 * 18 17 16 20 20 C 1.38549 * 120.27999 * 359.74570 * 19 18 17 21 21 F 1.35099 * 119.95374 * 180.27553 * 20 19 18 22 22 C 1.38208 * 120.09548 * 0.51553 * 20 19 18 23 23 N 1.29077 * 108.26949 * 15.65735 * 15 14 12 24 24 O 1.41389 * 112.87849 * 359.88263 * 23 15 14 25 25 H 0.97003 * 119.99646 * 0.02562 * 1 2 3 26 26 H 0.97002 * 120.00076 * 359.97438 * 9 7 2 27 27 H 1.08997 * 110.78906 * 99.39859 * 14 12 10 28 28 H 1.08995 * 110.95963 * 336.00630 * 14 12 10 29 29 H 1.07999 * 120.05704 * 359.97438 * 17 16 15 30 30 H 1.07993 * 119.91382 * 180.02562 * 18 17 16 31 31 H 1.07995 * 119.85847 * 180.02562 * 19 18 17 32 32 H 1.08002 * 120.09300 * 179.77043 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 2.4957 2.0464 -1.4001 5 1 1.4456 2.6527 0.7000 6 1 3.5457 1.4401 0.7000 7 6 2.0089 -1.2034 -0.0005 8 1 1.4688 -2.1386 -0.0005 9 7 3.3798 -1.2034 0.0000 10 6 4.0537 -2.3706 -0.0011 11 8 3.4472 -3.4210 -0.0020 12 6 5.5607 -2.3707 -0.0011 13 1 5.9493 -1.8441 0.8707 14 6 6.1145 -1.7590 -1.3101 15 6 7.3269 -2.6259 -1.5918 16 6 8.4173 -2.3080 -2.5353 17 6 8.3890 -1.1172 -3.2638 18 6 9.4105 -0.8248 -4.1435 19 6 10.4629 -1.7081 -4.3054 20 6 10.5013 -2.8891 -3.5819 21 9 11.5351 -3.7442 -3.7410 22 6 9.4812 -3.1959 -2.7014 23 7 7.2388 -3.6919 -0.8693 24 8 6.0768 -3.7157 -0.0641 25 1 -0.4850 0.8401 -0.0004 26 1 3.8649 -0.3634 0.0004 27 1 6.4084 -0.7205 -1.1578 28 1 5.3858 -1.8389 -2.1166 29 1 7.5686 -0.4260 -3.1388 30 1 9.3890 0.0963 -4.7068 31 1 11.2602 -1.4739 -4.9952 32 1 9.5093 -4.1183 -2.1402 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000195160665.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:29:21 Heat of formation + Delta-G solvation = -51.348534 kcal Electronic energy + Delta-G solvation = -20271.812786 eV Core-core repulsion = 16727.248495 eV Total energy + Delta-G solvation = -3544.564292 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 278.085 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -49.94297 -41.72412 -40.14580 -39.40547 -36.19489 -34.76120 -33.95872 -32.27579 -31.54562 -31.17107 -27.46786 -25.24887 -24.77179 -23.39172 -21.55708 -21.25497 -20.47848 -18.64133 -18.30003 -17.47425 -17.23172 -17.14960 -16.98027 -16.65128 -16.34016 -15.91193 -15.51828 -15.02319 -14.81933 -14.52508 -14.36334 -14.24745 -14.11531 -14.02367 -13.28932 -13.06274 -12.86134 -12.81612 -12.45291 -12.23880 -11.99278 -11.89087 -11.59403 -11.26616 -10.51724 -10.35596 -9.95255 -9.66381 -8.45941 -6.10851 -0.49559 0.15190 1.06244 1.31265 1.34332 1.47397 1.60789 1.73550 2.22869 2.55373 2.60959 2.83330 3.06422 3.27486 3.34170 3.38755 3.79938 3.83993 3.95616 4.04753 4.11418 4.30739 4.33425 4.54447 4.63066 4.82044 5.00606 5.08135 5.25179 5.32794 5.46242 5.80740 5.83582 6.13547 6.48783 6.75764 7.23452 7.76938 8.70961 Molecular weight = 278.09amu Principal moments of inertia in cm(-1) A = 0.026261 B = 0.003975 C = 0.003542 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1065.968319 B = 7041.702643 C = 7902.877977 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.927 5.927 2 C -0.009 4.009 3 Si 0.965 3.035 4 H -0.244 1.244 5 H -0.276 1.276 6 H -0.225 1.225 7 C -0.339 4.339 8 H 0.053 0.947 9 N -0.563 5.563 10 C 0.448 3.552 11 O -0.617 6.617 12 C 0.036 3.964 13 H 0.137 0.863 14 C -0.135 4.135 15 C 0.141 3.859 16 C -0.028 4.028 17 C -0.084 4.084 18 C -0.081 4.081 19 C -0.124 4.124 20 C 0.077 3.923 21 F -0.148 7.148 22 C -0.132 4.132 23 N -0.318 5.318 24 O -0.207 6.207 25 H 0.283 0.717 26 H 0.396 0.604 27 H 0.166 0.834 28 H 0.111 0.889 29 H 0.169 0.831 30 H 0.182 0.818 31 H 0.166 0.834 32 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 24.464 9.127 -10.029 27.971 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.566 5.566 2 C -0.209 4.209 3 Si 0.783 3.217 4 H -0.168 1.168 5 H -0.201 1.201 6 H -0.148 1.148 7 C -0.468 4.468 8 H 0.071 0.929 9 N -0.205 5.205 10 C 0.235 3.765 11 O -0.502 6.502 12 C -0.026 4.026 13 H 0.154 0.846 14 C -0.174 4.174 15 C -0.048 4.048 16 C -0.030 4.030 17 C -0.104 4.104 18 C -0.098 4.098 19 C -0.143 4.143 20 C 0.058 3.942 21 F -0.126 7.126 22 C -0.153 4.153 23 N -0.060 5.060 24 O -0.224 6.224 25 H 0.093 0.907 26 H 0.232 0.768 27 H 0.184 0.816 28 H 0.129 0.871 29 H 0.186 0.814 30 H 0.199 0.801 31 H 0.183 0.817 32 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges 24.194 7.323 -9.588 27.035 hybrid contribution -0.723 0.518 0.334 0.950 sum 23.471 7.840 -9.254 26.420 Atomic orbital electron populations 1.69803 1.08426 1.29768 1.48574 1.26228 0.96502 1.03038 0.95153 0.85382 0.79683 0.75885 0.80740 1.16793 1.20083 1.14785 1.18994 0.80949 0.95232 1.51614 0.92926 1.41761 1.05903 1.06790 1.66024 1.20163 0.89050 0.84043 0.83291 1.90594 1.70741 1.33273 1.55619 1.23550 0.91659 0.85599 1.01747 0.84551 1.23145 0.93894 1.04165 0.96173 1.24584 0.94513 0.92935 0.92784 1.17602 0.91419 0.96833 0.97112 1.21764 1.00221 0.94414 0.93966 1.21437 0.91292 1.00288 0.96806 1.21744 1.01313 0.91908 0.99371 1.17729 0.86074 0.90613 0.99785 1.91498 1.56577 1.69874 1.94676 1.21293 0.93866 1.00817 0.99354 1.78419 1.01443 1.20502 1.05620 1.91354 1.37696 1.26985 1.66336 0.90737 0.76766 0.81610 0.87083 0.81376 0.80087 0.81678 0.85552 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -53.77 13.96 21.66 0.30 -53.47 16 2 C -0.01 -0.49 5.50 84.93 0.47 -0.02 16 3 Si 0.97 34.80 27.74 68.60 1.90 36.70 16 4 H -0.24 -7.96 7.11 99.48 0.71 -7.25 16 5 H -0.28 -10.08 7.11 99.48 0.71 -9.37 16 6 H -0.22 -6.50 6.52 99.48 0.65 -5.85 16 7 C -0.34 -19.28 10.16 84.04 0.85 -18.43 16 8 H 0.05 3.64 7.39 -2.91 -0.02 3.62 16 9 N -0.56 -25.36 5.08 -306.99 -1.56 -26.92 16 10 C 0.45 20.92 7.09 87.66 0.62 21.55 16 11 O -0.62 -36.98 16.16 14.97 0.24 -36.74 16 12 C 0.04 1.24 4.23 30.44 0.13 1.37 16 13 H 0.14 3.66 8.14 -2.38 -0.02 3.64 16 14 C -0.13 -3.13 5.80 30.75 0.18 -2.95 16 15 C 0.14 3.55 7.16 45.77 0.33 3.87 16 16 C -0.03 -0.53 5.87 -20.13 -0.12 -0.65 16 17 C -0.08 -0.89 9.61 22.54 0.22 -0.68 16 18 C -0.08 -0.56 10.03 22.23 0.22 -0.34 16 19 C -0.12 -1.27 10.02 22.37 0.22 -1.04 16 20 C 0.08 1.33 7.29 22.34 0.16 1.49 16 21 F -0.15 -2.95 17.26 44.97 0.78 -2.17 16 22 C -0.13 -2.72 9.66 22.58 0.22 -2.51 16 23 N -0.32 -10.83 12.12 -42.23 -0.51 -11.34 16 24 O -0.21 -8.57 11.82 -20.29 -0.24 -8.81 16 25 H 0.28 14.86 8.31 -92.71 -0.77 14.09 16 26 H 0.40 13.75 5.76 -92.71 -0.53 13.22 16 27 H 0.17 1.95 7.95 -2.39 -0.02 1.93 16 28 H 0.11 2.74 7.91 -2.39 -0.02 2.72 16 29 H 0.17 0.85 7.37 -2.91 -0.02 0.83 16 30 H 0.18 -0.07 8.06 -2.91 -0.02 -0.10 16 31 H 0.17 0.83 8.06 -2.91 -0.02 0.80 16 32 H 0.13 2.99 7.84 -2.91 -0.02 2.96 16 Total: -1.00 -84.84 294.08 5.00 -79.83 By element: Atomic # 1 Polarization: 20.66 SS G_CDS: 0.59 Total: 21.25 kcal Atomic # 6 Polarization: -1.83 SS G_CDS: 3.50 Total: 1.67 kcal Atomic # 7 Polarization: -89.96 SS G_CDS: -1.77 Total: -91.73 kcal Atomic # 8 Polarization: -45.55 SS G_CDS: 0.00 Total: -45.55 kcal Atomic # 9 Polarization: -2.95 SS G_CDS: 0.78 Total: -2.17 kcal Atomic # 14 Polarization: 34.80 SS G_CDS: 1.90 Total: 36.70 kcal Total: -84.84 5.00 -79.83 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000195160665.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.484 kcal (2) G-P(sol) polarization free energy of solvation -84.836 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.352 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.003 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.832 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.349 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds