Wall clock time and date at job start Tue Mar 31 2020 00:29:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31414 * 1 3 3 Si 1.86795 * 120.00105 * 2 1 4 4 H 1.48505 * 109.47234 * 179.97438 * 3 2 1 5 5 H 1.48497 * 109.47403 * 299.99819 * 3 2 1 6 6 H 1.48503 * 109.47163 * 59.99615 * 3 2 1 7 7 C 1.38950 * 119.99926 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00299 * 180.02562 * 7 2 1 9 9 N 1.37104 * 120.00030 * 0.02562 * 7 2 1 10 10 C 1.34777 * 119.99773 * 180.27703 * 9 7 2 11 11 O 1.21293 * 120.00456 * 359.71934 * 10 9 7 12 12 C 1.50698 * 119.99538 * 179.72591 * 10 9 7 13 13 H 1.08998 * 110.86040 * 304.29033 * 12 10 9 14 14 C 1.54733 * 110.97552 * 68.09559 * 12 10 9 15 15 C 1.51689 * 102.55036 * 142.33474 * 14 12 10 16 16 C 1.47650 * 125.86615 * 164.63866 * 15 14 12 17 17 C 1.39640 * 120.13672 * 179.97438 * 16 15 14 18 18 C 1.37943 * 119.89895 * 179.97438 * 17 16 15 19 19 C 1.38340 * 120.17613 * 0.02562 * 18 17 16 20 20 C 1.38548 * 120.27863 * 0.02562 * 19 18 17 21 21 F 1.35098 * 119.95105 * 179.97438 * 20 19 18 22 22 C 1.38206 * 120.09660 * 359.74053 * 20 19 18 23 23 N 1.29085 * 108.26862 * 344.60922 * 15 14 12 24 24 O 1.41446 * 112.89038 * 359.70868 * 23 15 14 25 25 H 0.96999 * 119.99863 * 0.02562 * 1 2 3 26 26 H 0.97001 * 119.99681 * 359.97438 * 9 7 2 27 27 H 1.09004 * 110.79208 * 260.59587 * 14 12 10 28 28 H 1.08995 * 110.79714 * 24.07266 * 14 12 10 29 29 H 1.08001 * 120.04860 * 0.02562 * 17 16 15 30 30 H 1.08001 * 119.90822 * 179.97438 * 18 17 16 31 31 H 1.08005 * 119.85668 * 180.02562 * 19 18 17 32 32 H 1.07996 * 120.08814 * 180.24850 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 3.7082 1.3463 0.0006 5 1 1.8895 2.3964 -1.2125 6 1 1.8893 2.3964 1.2125 7 6 2.0089 -1.2034 0.0005 8 1 3.0889 -1.2034 0.0010 9 7 1.3233 -2.3907 0.0005 10 6 1.9973 -3.5579 0.0067 11 8 3.2102 -3.5580 0.0071 12 6 1.2437 -4.8629 0.0129 13 1 0.5523 -4.9078 0.8544 14 6 0.5005 -5.0798 -1.3268 15 6 0.6574 -6.5715 -1.5530 16 6 -0.1171 -7.3876 -2.5091 17 6 0.1276 -8.7579 -2.6203 18 6 -0.5992 -9.5158 -3.5148 19 6 -1.5694 -8.9219 -4.3021 20 6 -1.8175 -7.5628 -4.1985 21 9 -2.7662 -6.9895 -4.9709 22 6 -1.0994 -6.7935 -3.3027 23 7 1.5848 -7.0047 -0.7665 24 8 2.1517 -5.9831 0.0307 25 1 -0.4850 0.8400 -0.0004 26 1 0.3533 -2.3906 0.0005 27 1 -0.5518 -4.8112 -1.2334 28 1 0.9756 -4.5148 -2.1287 29 1 0.8843 -9.2237 -2.0064 30 1 -0.4098 -10.5756 -3.6013 31 1 -2.1357 -9.5203 -5.0004 32 1 -1.2957 -5.7348 -3.2191 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000195160675.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:29:26 Heat of formation + Delta-G solvation = -35.007379 kcal Electronic energy + Delta-G solvation = -20235.791525 eV Core-core repulsion = 16691.935839 eV Total energy + Delta-G solvation = -3543.855686 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 278.085 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -49.14930 -40.35553 -39.03197 -37.69767 -34.17397 -33.55957 -31.67824 -31.19036 -30.35921 -30.09685 -25.60568 -24.06408 -23.76105 -22.52053 -20.30484 -19.54731 -18.19665 -17.55651 -16.80243 -16.50813 -16.46985 -15.91227 -15.84616 -15.13471 -14.87116 -14.43340 -14.11480 -13.78610 -13.71488 -13.44126 -13.15886 -12.81006 -12.62099 -12.15571 -12.04767 -11.69920 -11.58880 -11.54924 -11.15674 -10.68244 -10.42512 -10.34424 -10.03802 -9.66983 -9.20051 -8.81574 -8.45996 -8.13650 -6.55781 -3.97364 0.35477 0.85318 2.04484 2.94412 3.08855 3.21378 3.28847 3.34983 3.60528 3.81926 3.99406 4.08610 4.30340 4.58860 4.62415 4.71351 4.80405 4.88176 4.98604 5.08186 5.24683 5.30162 5.51589 5.64097 5.70574 5.80797 5.85576 5.96287 6.04269 6.13830 6.48529 7.37427 7.43307 7.88665 8.42641 9.02174 9.33310 9.83499 10.61302 Molecular weight = 278.09amu Principal moments of inertia in cm(-1) A = 0.023138 B = 0.003885 C = 0.003407 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1209.859103 B = 7205.552011 C = 8217.174103 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.026 3.974 3 Si 0.932 3.068 4 H -0.266 1.266 5 H -0.280 1.280 6 H -0.280 1.280 7 C -0.303 4.303 8 H 0.107 0.893 9 N -0.549 5.549 10 C 0.441 3.559 11 O -0.571 6.571 12 C 0.037 3.963 13 H 0.101 0.899 14 C -0.138 4.138 15 C 0.111 3.889 16 C -0.001 4.001 17 C -0.093 4.093 18 C -0.093 4.093 19 C -0.140 4.140 20 C 0.099 3.901 21 F -0.136 7.136 22 C -0.123 4.123 23 N -0.279 5.279 24 O -0.156 6.156 25 H 0.274 0.726 26 H 0.394 0.606 27 H 0.109 0.891 28 H 0.111 0.889 29 H 0.141 0.859 30 H 0.139 0.861 31 H 0.139 0.861 32 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.044 -15.302 -7.714 18.930 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.176 4.176 3 Si 0.759 3.241 4 H -0.191 1.191 5 H -0.206 1.206 6 H -0.206 1.206 7 C -0.432 4.432 8 H 0.124 0.876 9 N -0.186 5.186 10 C 0.225 3.775 11 O -0.454 6.454 12 C -0.026 4.026 13 H 0.118 0.882 14 C -0.177 4.177 15 C -0.079 4.079 16 C -0.002 4.002 17 C -0.113 4.113 18 C -0.111 4.111 19 C -0.160 4.160 20 C 0.079 3.921 21 F -0.114 7.114 22 C -0.144 4.144 23 N -0.017 5.017 24 O -0.177 6.177 25 H 0.084 0.916 26 H 0.227 0.773 27 H 0.127 0.873 28 H 0.129 0.871 29 H 0.158 0.842 30 H 0.157 0.843 31 H 0.156 0.844 32 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -6.570 -15.954 -7.244 18.713 hybrid contribution -0.950 1.794 -0.285 2.050 sum -7.520 -14.160 -7.529 17.713 Atomic orbital electron populations 1.69610 1.05999 1.28451 1.49632 1.25301 0.95683 0.99869 0.96758 0.85753 0.79793 0.80711 0.77856 1.19052 1.20572 1.20562 1.19803 0.93565 0.81793 1.48047 0.87563 1.41765 1.09243 1.04173 1.63451 1.19214 0.88196 0.83820 0.86316 1.90586 1.13300 1.86444 1.55085 1.23533 0.91985 0.89629 0.97426 0.88157 1.23013 1.04038 0.91980 0.98705 1.24094 0.95213 0.94361 0.94196 1.17555 0.95244 0.92404 0.95039 1.21462 0.99360 0.92386 0.98119 1.20975 0.94725 1.00513 0.94875 1.21325 1.00026 0.93134 1.01518 1.17458 0.90016 0.91577 0.93020 1.91533 1.61803 1.85005 1.73092 1.21258 0.95948 1.01353 0.95868 1.78302 1.07206 1.13166 1.03029 1.91369 1.40640 1.21252 1.64428 0.91638 0.77268 0.87275 0.87124 0.84157 0.84295 0.84361 0.83605 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -23.34 13.05 55.50 0.72 -22.62 16 2 C 0.03 0.68 5.50 -17.47 -0.10 0.59 16 3 Si 0.93 20.41 29.55 -169.99 -5.02 15.39 16 4 H -0.27 -5.87 7.11 56.52 0.40 -5.47 16 5 H -0.28 -6.02 7.11 56.52 0.40 -5.62 16 6 H -0.28 -6.04 7.11 56.52 0.40 -5.63 16 7 C -0.30 -8.22 9.68 -14.93 -0.14 -8.36 16 8 H 0.11 3.05 7.16 -52.49 -0.38 2.68 16 9 N -0.55 -13.47 5.29 -10.96 -0.06 -13.53 16 10 C 0.44 10.58 7.09 -10.99 -0.08 10.50 16 11 O -0.57 -16.25 16.16 -13.32 -0.22 -16.47 16 12 C 0.04 0.69 4.23 -26.97 -0.11 0.58 16 13 H 0.10 1.65 8.14 -51.93 -0.42 1.23 16 14 C -0.14 -2.07 5.81 -26.48 -0.15 -2.22 16 15 C 0.11 1.61 7.16 -79.42 -0.57 1.04 16 16 C 0.00 -0.01 5.87 -105.04 -0.62 -0.63 16 17 C -0.09 -0.92 9.68 -39.17 -0.38 -1.30 16 18 C -0.09 -0.70 10.03 -39.65 -0.40 -1.10 16 19 C -0.14 -1.11 10.02 -39.43 -0.39 -1.50 16 20 C 0.10 0.97 7.29 -39.48 -0.29 0.68 16 21 F -0.14 -1.45 17.26 2.25 0.04 -1.41 16 22 C -0.12 -1.29 9.59 -39.10 -0.38 -1.66 16 23 N -0.28 -4.83 12.12 35.30 0.43 -4.40 16 24 O -0.16 -3.24 11.83 -30.26 -0.36 -3.60 16 25 H 0.27 6.72 8.31 -40.82 -0.34 6.38 16 26 H 0.39 8.99 7.90 -40.82 -0.32 8.66 16 27 H 0.11 1.29 7.95 -51.93 -0.41 0.88 16 28 H 0.11 1.75 7.90 -51.93 -0.41 1.34 16 29 H 0.14 1.35 7.84 -52.49 -0.41 0.94 16 30 H 0.14 0.66 8.06 -52.49 -0.42 0.24 16 31 H 0.14 0.78 8.06 -52.48 -0.42 0.36 16 32 H 0.15 1.38 7.36 -52.49 -0.39 0.99 16 LS Contribution 297.20 15.07 4.48 4.48 Total: -1.00 -32.26 297.20 -6.31 -38.58 By element: Atomic # 1 Polarization: 9.70 SS G_CDS: -2.72 Total: 6.98 kcal Atomic # 6 Polarization: 0.21 SS G_CDS: -3.61 Total: -3.39 kcal Atomic # 7 Polarization: -41.64 SS G_CDS: 1.09 Total: -40.55 kcal Atomic # 8 Polarization: -19.50 SS G_CDS: -0.57 Total: -20.07 kcal Atomic # 9 Polarization: -1.45 SS G_CDS: 0.04 Total: -1.41 kcal Atomic # 14 Polarization: 20.41 SS G_CDS: -5.02 Total: 15.39 kcal Total LS contribution 4.48 Total: 4.48 kcal Total: -32.26 -6.31 -38.58 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000195160675.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.568 kcal (2) G-P(sol) polarization free energy of solvation -32.262 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.694 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.313 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.576 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.007 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds