Wall clock time and date at job start Tue Mar 31 2020 00:29:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31414 * 1 3 3 Si 1.86795 * 120.00105 * 2 1 4 4 H 1.48505 * 109.47234 * 179.97438 * 3 2 1 5 5 H 1.48497 * 109.47403 * 299.99819 * 3 2 1 6 6 H 1.48503 * 109.47163 * 59.99615 * 3 2 1 7 7 C 1.38950 * 119.99926 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00299 * 180.02562 * 7 2 1 9 9 N 1.37104 * 120.00030 * 0.02562 * 7 2 1 10 10 C 1.34777 * 119.99773 * 180.27703 * 9 7 2 11 11 O 1.21293 * 120.00456 * 359.71934 * 10 9 7 12 12 C 1.50698 * 119.99538 * 179.72591 * 10 9 7 13 13 H 1.08998 * 110.86040 * 304.29033 * 12 10 9 14 14 C 1.54733 * 110.97552 * 68.09559 * 12 10 9 15 15 C 1.51689 * 102.55036 * 142.33474 * 14 12 10 16 16 C 1.47650 * 125.86615 * 164.63866 * 15 14 12 17 17 C 1.39640 * 120.13672 * 179.97438 * 16 15 14 18 18 C 1.37943 * 119.89895 * 179.97438 * 17 16 15 19 19 C 1.38340 * 120.17613 * 0.02562 * 18 17 16 20 20 C 1.38548 * 120.27863 * 0.02562 * 19 18 17 21 21 F 1.35098 * 119.95105 * 179.97438 * 20 19 18 22 22 C 1.38206 * 120.09660 * 359.74053 * 20 19 18 23 23 N 1.29085 * 108.26862 * 344.60922 * 15 14 12 24 24 O 1.41446 * 112.89038 * 359.70868 * 23 15 14 25 25 H 0.96999 * 119.99863 * 0.02562 * 1 2 3 26 26 H 0.97001 * 119.99681 * 359.97438 * 9 7 2 27 27 H 1.09004 * 110.79208 * 260.59587 * 14 12 10 28 28 H 1.08995 * 110.79714 * 24.07266 * 14 12 10 29 29 H 1.08001 * 120.04860 * 0.02562 * 17 16 15 30 30 H 1.08001 * 119.90822 * 179.97438 * 18 17 16 31 31 H 1.08005 * 119.85668 * 180.02562 * 19 18 17 32 32 H 1.07996 * 120.08814 * 180.24850 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 3.7082 1.3463 0.0006 5 1 1.8895 2.3964 -1.2125 6 1 1.8893 2.3964 1.2125 7 6 2.0089 -1.2034 0.0005 8 1 3.0889 -1.2034 0.0010 9 7 1.3233 -2.3907 0.0005 10 6 1.9973 -3.5579 0.0067 11 8 3.2102 -3.5580 0.0071 12 6 1.2437 -4.8629 0.0129 13 1 0.5523 -4.9078 0.8544 14 6 0.5005 -5.0798 -1.3268 15 6 0.6574 -6.5715 -1.5530 16 6 -0.1171 -7.3876 -2.5091 17 6 0.1276 -8.7579 -2.6203 18 6 -0.5992 -9.5158 -3.5148 19 6 -1.5694 -8.9219 -4.3021 20 6 -1.8175 -7.5628 -4.1985 21 9 -2.7662 -6.9895 -4.9709 22 6 -1.0994 -6.7935 -3.3027 23 7 1.5848 -7.0047 -0.7665 24 8 2.1517 -5.9831 0.0307 25 1 -0.4850 0.8400 -0.0004 26 1 0.3533 -2.3906 0.0005 27 1 -0.5518 -4.8112 -1.2334 28 1 0.9756 -4.5148 -2.1287 29 1 0.8843 -9.2237 -2.0064 30 1 -0.4098 -10.5756 -3.6013 31 1 -2.1357 -9.5203 -5.0004 32 1 -1.2957 -5.7348 -3.2191 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000195160675.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:29:25 Heat of formation + Delta-G solvation = -55.728487 kcal Electronic energy + Delta-G solvation = -20236.690060 eV Core-core repulsion = 16691.935839 eV Total energy + Delta-G solvation = -3544.754221 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 278.085 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -49.91347 -41.68648 -40.09146 -39.34906 -36.15123 -34.76477 -33.57766 -32.19866 -31.62326 -31.03713 -27.43867 -25.32625 -24.87272 -23.39650 -21.57043 -21.09617 -20.10973 -18.65159 -18.33772 -17.44980 -17.22571 -17.10570 -16.87316 -16.61570 -16.26304 -15.98284 -15.54742 -15.35251 -14.83434 -14.46173 -14.30910 -14.10290 -13.99670 -13.59615 -13.29258 -13.04454 -12.88269 -12.81830 -12.49557 -12.35818 -12.13795 -11.84035 -11.63576 -11.25796 -10.45690 -10.14770 -9.96432 -9.67106 -8.55994 -6.06148 -0.51638 0.13810 1.03770 1.30604 1.41135 1.52838 1.62781 1.82323 2.26732 2.58688 2.68042 2.94557 3.06719 3.18704 3.37459 3.44078 3.82141 3.86016 3.95091 4.06111 4.17829 4.27999 4.34518 4.51266 4.52952 4.82920 4.99508 5.05217 5.22728 5.31272 5.34417 5.78749 5.84905 6.10178 6.45318 6.99965 7.35618 7.90678 8.60686 Molecular weight = 278.09amu Principal moments of inertia in cm(-1) A = 0.023138 B = 0.003885 C = 0.003407 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1209.859103 B = 7205.552011 C = 8217.174103 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.909 5.909 2 C -0.002 4.002 3 Si 0.994 3.006 4 H -0.275 1.275 5 H -0.267 1.267 6 H -0.268 1.268 7 C -0.341 4.341 8 H 0.079 0.921 9 N -0.547 5.547 10 C 0.437 3.563 11 O -0.625 6.625 12 C 0.041 3.959 13 H 0.126 0.874 14 C -0.134 4.134 15 C 0.141 3.859 16 C -0.027 4.027 17 C -0.094 4.094 18 C -0.083 4.083 19 C -0.123 4.123 20 C 0.084 3.916 21 F -0.142 7.142 22 C -0.123 4.123 23 N -0.305 5.305 24 O -0.203 6.203 25 H 0.282 0.718 26 H 0.402 0.598 27 H 0.147 0.853 28 H 0.102 0.898 29 H 0.140 0.860 30 H 0.175 0.825 31 H 0.168 0.832 32 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.110 -16.257 -9.071 21.185 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.203 4.203 3 Si 0.817 3.183 4 H -0.200 1.200 5 H -0.192 1.192 6 H -0.193 1.193 7 C -0.470 4.470 8 H 0.097 0.903 9 N -0.184 5.184 10 C 0.222 3.778 11 O -0.512 6.512 12 C -0.021 4.021 13 H 0.143 0.857 14 C -0.173 4.173 15 C -0.048 4.048 16 C -0.029 4.029 17 C -0.114 4.114 18 C -0.100 4.100 19 C -0.142 4.142 20 C 0.065 3.935 21 F -0.121 7.121 22 C -0.144 4.144 23 N -0.047 5.047 24 O -0.221 6.221 25 H 0.092 0.908 26 H 0.237 0.763 27 H 0.165 0.835 28 H 0.120 0.880 29 H 0.157 0.843 30 H 0.192 0.808 31 H 0.185 0.815 32 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges -8.673 -16.894 -8.585 20.840 hybrid contribution -0.428 1.990 0.008 2.036 sum -9.101 -14.903 -8.577 19.455 Atomic orbital electron populations 1.69647 1.06723 1.29772 1.48680 1.26039 0.96578 1.02281 0.95434 0.84858 0.77983 0.76816 0.78620 1.20000 1.19164 1.19329 1.19727 0.92837 0.83563 1.50915 0.90300 1.41730 1.09489 1.03957 1.63223 1.20075 0.87871 0.85334 0.84501 1.90538 1.15893 1.87572 1.57184 1.23424 0.91594 0.86603 1.00483 0.85663 1.23035 1.05580 0.92439 0.96231 1.24494 0.93358 0.94110 0.92856 1.17521 0.96443 0.93002 0.95917 1.21631 0.99480 0.91827 0.98442 1.21331 0.93453 1.01962 0.93302 1.21718 0.99202 0.92414 1.00876 1.17633 0.90230 0.92451 0.93235 1.91521 1.62060 1.85269 1.73245 1.21305 0.95560 1.01822 0.95677 1.78349 1.09488 1.11761 1.05095 1.91335 1.42506 1.22273 1.65937 0.90803 0.76312 0.83487 0.87991 0.84256 0.80777 0.81461 0.83135 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -46.56 13.05 21.66 0.28 -46.27 16 2 C 0.00 -0.09 5.50 84.93 0.47 0.38 16 3 Si 0.99 41.59 29.55 68.60 2.03 43.61 16 4 H -0.28 -11.84 7.11 99.48 0.71 -11.14 16 5 H -0.27 -10.58 7.11 99.48 0.71 -9.87 16 6 H -0.27 -10.71 7.11 99.48 0.71 -10.01 16 7 C -0.34 -19.06 9.68 84.04 0.81 -18.25 16 8 H 0.08 4.77 7.16 -2.91 -0.02 4.75 16 9 N -0.55 -27.54 5.29 -306.98 -1.62 -29.16 16 10 C 0.44 21.77 7.09 87.66 0.62 22.39 16 11 O -0.62 -37.56 16.16 14.97 0.24 -37.32 16 12 C 0.04 1.57 4.23 30.44 0.13 1.70 16 13 H 0.13 4.10 8.14 -2.39 -0.02 4.08 16 14 C -0.13 -3.94 5.81 30.75 0.18 -3.76 16 15 C 0.14 3.99 7.16 45.77 0.33 4.32 16 16 C -0.03 -0.59 5.87 -20.13 -0.12 -0.71 16 17 C -0.09 -1.63 9.68 22.54 0.22 -1.41 16 18 C -0.08 -0.92 10.03 22.22 0.22 -0.70 16 19 C -0.12 -1.45 10.02 22.37 0.22 -1.22 16 20 C 0.08 1.41 7.29 22.34 0.16 1.58 16 21 F -0.14 -2.70 17.26 44.97 0.78 -1.93 16 22 C -0.12 -2.31 9.59 22.58 0.22 -2.09 16 23 N -0.30 -10.66 12.12 -42.23 -0.51 -11.17 16 24 O -0.20 -8.79 11.83 -20.40 -0.24 -9.03 16 25 H 0.28 13.43 8.31 -92.71 -0.77 12.66 16 26 H 0.40 18.50 7.90 -92.71 -0.73 17.77 16 27 H 0.15 3.17 7.95 -2.38 -0.02 3.15 16 28 H 0.10 3.24 7.90 -2.39 -0.02 3.22 16 29 H 0.14 2.45 7.84 -2.91 -0.02 2.43 16 30 H 0.17 0.75 8.06 -2.91 -0.02 0.73 16 31 H 0.17 1.03 8.06 -2.91 -0.02 1.01 16 32 H 0.15 2.57 7.36 -2.91 -0.02 2.55 16 Total: -1.00 -72.57 297.20 4.87 -67.71 By element: Atomic # 1 Polarization: 20.89 SS G_CDS: 0.45 Total: 21.34 kcal Atomic # 6 Polarization: -1.24 SS G_CDS: 3.46 Total: 2.22 kcal Atomic # 7 Polarization: -84.76 SS G_CDS: -1.85 Total: -86.61 kcal Atomic # 8 Polarization: -46.35 SS G_CDS: 0.00 Total: -46.35 kcal Atomic # 9 Polarization: -2.70 SS G_CDS: 0.78 Total: -1.93 kcal Atomic # 14 Polarization: 41.59 SS G_CDS: 2.03 Total: 43.61 kcal Total: -72.57 4.87 -67.71 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000195160675.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.980 kcal (2) G-P(sol) polarization free energy of solvation -72.574 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.593 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.865 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.709 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.728 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds