Wall clock time and date at job start Tue Mar 31 2020 00:26:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13604 * 1 3 3 C 1.43200 * 179.97438 * 2 1 4 4 C 1.39750 * 120.09012 * 317.69701 * 3 2 1 5 5 C 1.37757 * 119.94482 * 180.30168 * 4 3 2 6 6 C 1.38903 * 120.12258 * 359.43910 * 5 4 3 7 7 O 1.35810 * 119.91329 * 180.26128 * 6 5 4 8 8 C 1.42900 * 116.99939 * 0.29383 * 7 6 5 9 9 C 1.50703 * 109.47124 * 180.02562 * 8 7 6 10 10 O 1.21277 * 120.00153 * 0.02562 * 9 8 7 11 11 N 1.34780 * 119.99989 * 180.02562 * 9 8 7 12 12 C 1.46492 * 120.00074 * 180.02562 * 11 9 8 13 13 C 1.50696 * 109.47463 * 180.02562 * 12 11 9 14 14 H 1.08000 * 119.99630 * 359.97438 * 13 12 11 15 15 C 1.37881 * 120.00396 * 179.97438 * 13 12 11 16 16 N 1.31516 * 119.99781 * 359.97438 * 15 13 12 17 17 Si 1.86797 * 120.00251 * 179.97438 * 15 13 12 18 18 H 1.48497 * 109.47141 * 89.99802 * 17 15 13 19 19 H 1.48497 * 109.47441 * 210.00221 * 17 15 13 20 20 H 1.48508 * 109.47077 * 330.00363 * 17 15 13 21 21 C 1.39135 * 120.17255 * 0.55693 * 6 5 4 22 22 F 1.35106 * 119.96845 * 179.70194 * 21 6 5 23 23 C 1.37923 * 120.05368 * 359.72711 * 21 6 5 24 24 H 1.08002 * 120.02333 * 0.02562 * 4 3 2 25 25 H 1.08003 * 119.93876 * 179.72143 * 5 4 3 26 26 H 1.09005 * 109.47606 * 300.00467 * 8 7 6 27 27 H 1.09005 * 109.47035 * 60.00230 * 8 7 6 28 28 H 0.97007 * 119.99598 * 359.97438 * 11 9 8 29 29 H 1.09005 * 109.46897 * 300.00069 * 12 11 9 30 30 H 1.08997 * 109.47412 * 59.99256 * 12 11 9 31 31 H 0.97001 * 119.99992 * 179.97438 * 16 15 13 32 32 H 1.08003 * 120.05547 * 180.02562 * 23 21 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2691 -0.8933 0.8138 5 6 4.6466 -0.8859 0.8161 6 6 5.3403 0.0006 0.0023 7 8 6.6984 0.0006 0.0040 8 6 7.3461 -0.9413 0.8615 9 6 8.8403 -0.7947 0.7310 10 8 9.3048 0.0349 -0.0218 11 7 9.6605 -1.5857 1.4509 12 6 11.1129 -1.4429 1.3245 13 6 11.7960 -2.4371 2.2278 14 1 11.2070 -3.1080 2.8356 15 6 13.1729 -2.4903 2.2782 16 7 13.8900 -1.6737 1.5377 17 14 14.0196 -3.7222 3.3984 18 1 14.2455 -4.9900 2.6589 19 1 15.3239 -3.1704 3.8450 20 1 13.1622 -3.9858 4.5821 21 6 4.6475 0.8928 -0.8100 22 9 5.3263 1.7574 -1.5954 23 6 3.2682 0.8955 -0.8136 24 1 2.7312 -1.5864 1.4438 25 1 5.1883 -1.5738 1.4485 26 1 7.0519 -0.7546 1.8944 27 1 7.0536 -1.9522 0.5775 28 1 9.2889 -2.2491 2.0534 29 1 11.4077 -1.6286 0.2916 30 1 11.4048 -0.4321 1.6094 31 1 14.8587 -1.7109 1.5734 32 1 2.7304 1.5878 -1.4445 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000225304970.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:26:45 Heat of formation + Delta-G solvation = -87.575070 kcal Electronic energy + Delta-G solvation = -19586.849106 eV Core-core repulsion = 16040.713913 eV Total energy + Delta-G solvation = -3546.135192 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 278.085 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -49.86151 -41.47091 -40.31194 -38.91350 -37.18300 -36.16161 -34.38876 -31.97554 -31.84187 -30.37390 -28.39548 -25.07606 -24.40240 -23.85139 -21.58093 -20.31815 -19.39465 -19.12197 -18.00315 -17.60289 -17.36663 -17.01910 -16.94225 -16.58073 -16.20094 -15.59782 -15.55932 -14.99572 -14.95055 -14.74957 -14.47796 -14.15207 -13.99947 -13.89833 -13.41315 -13.16016 -13.07939 -12.91822 -12.69602 -12.31906 -12.19018 -12.06882 -11.47258 -10.84746 -10.79387 -10.08970 -9.88996 -9.34925 -8.27258 -6.43891 -0.37219 0.04491 1.45387 1.48618 1.53269 1.58711 1.60563 1.63762 1.77659 2.38355 2.65259 2.70113 2.80571 3.08404 3.22100 3.60586 3.79084 3.95067 3.97121 4.10936 4.17577 4.38595 4.61725 4.93488 4.99790 5.11610 5.12353 5.24324 5.40582 5.46223 5.66808 5.84969 6.11228 6.43014 6.66721 6.84691 7.24922 7.44454 8.84894 Molecular weight = 278.09amu Principal moments of inertia in cm(-1) A = 0.039967 B = 0.002795 C = 0.002618 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 700.409039 B =10014.696934 C =10694.658847 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.461 5.461 2 C 0.287 3.713 3 C -0.047 4.047 4 C -0.013 4.013 5 C -0.175 4.175 6 C 0.119 3.881 7 O -0.314 6.314 8 C 0.048 3.952 9 C 0.492 3.508 10 O -0.594 6.594 11 N -0.696 5.696 12 C 0.265 3.735 13 C -0.553 4.553 14 H 0.091 0.909 15 C 0.001 3.999 16 N -0.933 5.933 17 Si 0.985 3.015 18 H -0.272 1.272 19 H -0.288 1.288 20 H -0.252 1.252 21 C 0.040 3.960 22 F -0.146 7.146 23 C -0.056 4.056 24 H 0.179 0.821 25 H 0.186 0.814 26 H 0.141 0.859 27 H 0.141 0.859 28 H 0.416 0.584 29 H -0.012 1.012 30 H -0.012 1.012 31 H 0.268 0.732 32 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.134 -2.557 2.313 22.401 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.137 5.137 2 C -0.027 4.027 3 C -0.051 4.051 4 C -0.034 4.034 5 C -0.194 4.194 6 C 0.071 3.929 7 O -0.226 6.226 8 C -0.029 4.029 9 C 0.278 3.722 10 O -0.475 6.475 11 N -0.348 5.348 12 C 0.142 3.858 13 C -0.590 4.590 14 H 0.109 0.891 15 C -0.198 4.198 16 N -0.571 5.571 17 Si 0.808 3.192 18 H -0.197 1.197 19 H -0.214 1.214 20 H -0.175 1.175 21 C 0.020 3.980 22 F -0.125 7.125 23 C -0.077 4.077 24 H 0.196 0.804 25 H 0.203 0.797 26 H 0.158 0.842 27 H 0.158 0.842 28 H 0.253 0.747 29 H 0.006 0.994 30 H 0.006 0.994 31 H 0.077 0.923 32 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges -23.204 -1.772 1.607 23.327 hybrid contribution 1.490 -0.129 0.097 1.499 sum -21.714 -1.901 1.704 21.863 Atomic orbital electron populations 1.81331 1.13220 1.09434 1.09681 1.25479 0.92221 0.92531 0.92488 1.15582 0.83719 1.02072 1.03744 1.21387 0.92867 0.94860 0.94255 1.21487 0.94994 1.01088 1.01786 1.19700 0.82577 0.95262 0.95368 1.86202 1.16459 1.57350 1.62577 1.22825 0.87531 0.95170 0.97394 1.21002 0.89876 0.81028 0.80250 1.90718 1.78875 1.37715 1.40205 1.45977 1.07286 1.37753 1.43817 1.18586 0.75973 0.95722 0.95475 1.21622 0.92302 1.19624 1.25490 0.89133 1.26088 0.98304 0.98053 0.97377 1.70146 1.06789 1.39081 1.41115 0.85148 0.77463 0.77832 0.78722 1.19719 1.21423 1.17529 1.17024 0.89803 0.94038 0.97122 1.91517 1.80325 1.68000 1.72668 1.20997 0.90149 0.98422 0.98110 0.80381 0.79680 0.84165 0.84160 0.74746 0.99395 0.99371 0.92331 0.81739 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.46 -9.30 18.54 19.00 0.35 -8.95 16 2 C 0.29 4.17 15.33 88.33 1.35 5.52 16 3 C -0.05 -0.51 5.74 -21.30 -0.12 -0.63 16 4 C -0.01 -0.09 9.75 22.52 0.22 0.13 16 5 C -0.18 -1.54 9.01 22.32 0.20 -1.34 16 6 C 0.12 2.20 6.70 22.64 0.15 2.35 16 7 O -0.31 -8.32 9.52 -72.38 -0.69 -9.01 16 8 C 0.05 0.97 5.21 71.24 0.37 1.34 16 9 C 0.49 17.84 7.91 87.66 0.69 18.53 16 10 O -0.59 -29.48 16.50 16.02 0.26 -29.21 16 11 N -0.70 -25.91 5.55 -466.81 -2.59 -28.50 16 12 C 0.27 13.78 5.43 85.63 0.46 14.24 16 13 C -0.55 -28.24 9.28 25.60 0.24 -28.00 16 14 H 0.09 4.04 7.60 -2.91 -0.02 4.02 16 15 C 0.00 0.07 5.46 84.66 0.46 0.53 16 16 N -0.93 -54.98 13.29 21.45 0.28 -54.69 16 17 Si 0.99 40.43 29.54 68.60 2.03 42.46 16 18 H -0.27 -10.81 7.11 99.48 0.71 -10.10 16 19 H -0.29 -11.94 7.11 99.48 0.71 -11.24 16 20 H -0.25 -9.43 7.11 99.48 0.71 -8.72 16 21 C 0.04 0.80 7.30 22.41 0.16 0.96 16 22 F -0.15 -3.95 17.10 44.97 0.77 -3.18 16 23 C -0.06 -0.74 9.73 22.56 0.22 -0.53 16 24 H 0.18 0.04 8.06 -2.91 -0.02 0.01 16 25 H 0.19 0.36 6.27 -2.91 -0.02 0.34 16 26 H 0.14 1.60 7.64 -2.38 -0.02 1.58 16 27 H 0.14 1.60 7.67 -2.38 -0.02 1.58 16 28 H 0.42 11.39 8.32 -92.70 -0.77 10.62 16 29 H -0.01 -0.71 8.14 -2.38 -0.02 -0.73 16 30 H -0.01 -0.69 8.14 -2.39 -0.02 -0.71 16 31 H 0.27 14.80 8.31 -92.71 -0.77 14.03 16 32 H 0.17 1.67 8.06 -2.91 -0.02 1.64 16 Total: -1.00 -80.90 306.39 5.25 -75.65 By element: Atomic # 1 Polarization: 1.91 SS G_CDS: 0.42 Total: 2.32 kcal Atomic # 6 Polarization: 8.70 SS G_CDS: 4.42 Total: 13.12 kcal Atomic # 7 Polarization: -90.20 SS G_CDS: -1.95 Total: -92.15 kcal Atomic # 8 Polarization: -37.80 SS G_CDS: -0.42 Total: -38.23 kcal Atomic # 9 Polarization: -3.95 SS G_CDS: 0.77 Total: -3.18 kcal Atomic # 14 Polarization: 40.43 SS G_CDS: 2.03 Total: 42.46 kcal Total: -80.90 5.25 -75.65 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000225304970.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.923 kcal (2) G-P(sol) polarization free energy of solvation -80.902 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.825 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.250 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.652 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.575 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds