Wall clock time and date at job start Tue Mar 31 2020 00:00:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86803 * 119.99846 * 2 1 4 4 H 1.48501 * 109.46987 * 359.97438 * 3 2 1 5 5 H 1.48502 * 109.47144 * 120.00137 * 3 2 1 6 6 H 1.48501 * 109.46899 * 239.99892 * 3 2 1 7 7 C 1.37868 * 120.00145 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00243 * 185.76101 * 7 2 1 9 9 C 1.50702 * 120.00285 * 5.76468 * 7 2 1 10 10 C 1.53001 * 115.54470 * 274.84026 * 9 7 2 11 11 O 1.42898 * 109.47632 * 300.19560 * 10 9 7 12 12 C 1.34997 * 117.00390 * 184.91490 * 11 10 9 13 13 O 1.21720 * 120.00197 * 359.97438 * 12 11 10 14 14 C 1.41222 * 119.99997 * 179.97438 * 12 11 10 15 15 C 1.35786 * 119.99842 * 173.26417 * 14 12 11 16 16 C 1.41500 * 119.99876 * 347.08725 * 15 14 12 17 17 C 1.37091 * 125.47372 * 130.85614 * 16 15 14 18 18 C 1.37399 * 113.21835 * 179.79440 * 17 16 15 19 19 C 1.33893 * 115.12994 * 0.49513 * 18 17 16 20 20 S 1.70606 * 111.01819 * 359.72345 * 19 18 17 21 21 C 1.52997 * 117.50270 * 129.17207 * 9 7 2 22 22 C 1.52993 * 117.50020 * 60.50483 * 9 7 2 23 23 H 0.96996 * 119.99638 * 175.13372 * 1 2 3 24 24 H 1.09000 * 109.47260 * 60.19840 * 10 9 7 25 25 H 1.08999 * 109.46927 * 180.19536 * 10 9 7 26 26 H 1.07997 * 119.99909 * 353.26774 * 14 12 11 27 27 H 1.08002 * 119.99395 * 167.08440 * 15 14 12 28 28 H 1.08003 * 123.39574 * 359.96103 * 17 16 15 29 29 H 1.08005 * 122.43721 * 180.21653 * 18 17 16 30 30 H 1.08004 * 124.48856 * 179.70397 * 19 18 17 31 31 H 1.08997 * 117.49739 * 359.97438 * 21 9 7 32 32 H 1.08995 * 117.50004 * 145.02572 * 21 9 7 33 33 H 1.08996 * 117.50447 * 214.98204 * 22 9 7 34 34 H 1.09002 * 117.50012 * 359.97438 * 22 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 1.2841 2.7465 -0.0006 5 1 3.1029 1.6965 1.2125 6 1 3.1029 1.6964 -1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0805 -1.1963 0.0944 9 6 1.2568 -2.4959 -0.1300 10 6 0.7092 -3.0760 1.1756 11 8 1.7892 -3.3170 2.0799 12 6 1.4877 -3.9260 3.2463 13 8 0.3376 -4.2430 3.4879 14 6 2.5066 -4.1954 4.1862 15 6 2.1872 -4.6817 5.4131 16 6 0.8426 -4.6633 5.8533 17 6 0.1688 -5.7264 6.3968 18 6 -1.1273 -5.4273 6.7414 19 6 -1.5090 -4.1704 6.4819 20 16 -0.2349 -3.2755 5.7844 21 6 1.7383 -3.4835 -1.1947 22 6 0.4319 -2.7125 -1.4001 23 1 -0.4849 -0.8370 -0.0713 24 1 0.0116 -2.3682 1.6233 25 1 0.1929 -4.0132 0.9684 26 1 3.5399 -4.0145 3.9292 27 1 2.9596 -5.0826 6.0528 28 1 0.6128 -6.7001 6.5422 29 1 -1.7913 -6.1545 7.1849 30 1 -2.4932 -3.7756 6.6867 31 1 2.5956 -3.1914 -1.8011 32 1 1.6645 -4.5465 -0.9653 33 1 -0.5007 -3.2687 -1.3058 34 1 0.4296 -1.9132 -2.1412 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000255580787.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:00:24 Heat of formation + Delta-G solvation = -2.520731 kcal Electronic energy + Delta-G solvation = -18919.016075 eV Core-core repulsion = 15910.489541 eV Total energy + Delta-G solvation = -3008.526534 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 278.076 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.08180 -37.94402 -37.04573 -35.51229 -33.76938 -31.87813 -29.11850 -27.02560 -25.02013 -24.56674 -22.75627 -21.33977 -19.85040 -19.55082 -19.36795 -17.62849 -17.03763 -16.40571 -15.85397 -15.43777 -14.83043 -14.30952 -14.00487 -13.72536 -13.11245 -12.96084 -12.75937 -12.64840 -12.55795 -12.15837 -11.96732 -11.75862 -10.90376 -10.79925 -10.72794 -10.50046 -10.17828 -10.10359 -9.94628 -9.66565 -9.54956 -8.54109 -8.46480 -8.35964 -8.32024 -7.86749 -6.35274 -4.08481 0.35347 1.53012 1.96548 2.23286 2.80353 3.43750 3.44103 3.45271 3.53449 3.64329 4.51638 4.89942 5.00861 5.11892 5.24950 5.32512 5.43426 5.52041 5.60356 5.82191 5.85290 6.05290 6.12486 6.14600 6.17791 6.35127 6.41468 6.48979 6.55212 6.57803 6.80811 7.06913 7.19698 7.31817 8.21592 8.42148 8.43518 8.86688 9.65280 11.03863 Molecular weight = 278.08amu Principal moments of inertia in cm(-1) A = 0.022048 B = 0.004905 C = 0.004615 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1269.653217 B = 5707.170724 C = 6066.232976 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.907 5.907 2 C 0.025 3.975 3 Si 1.068 2.932 4 H -0.283 1.283 5 H -0.287 1.287 6 H -0.287 1.287 7 C -0.562 4.562 8 H 0.056 0.944 9 C 0.015 3.985 10 C 0.112 3.888 11 O -0.323 6.323 12 C 0.472 3.528 13 O -0.508 6.508 14 C -0.187 4.187 15 C 0.014 3.986 16 C -0.196 4.196 17 C -0.110 4.110 18 C -0.150 4.150 19 C -0.259 4.259 20 S 0.251 5.749 21 C -0.191 4.191 22 C -0.170 4.170 23 H 0.273 0.727 24 H 0.063 0.937 25 H 0.037 0.963 26 H 0.147 0.853 27 H 0.148 0.852 28 H 0.139 0.861 29 H 0.132 0.868 30 H 0.159 0.841 31 H 0.084 0.916 32 H 0.068 0.932 33 H 0.068 0.932 34 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.833 -9.233 12.385 15.556 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.542 5.542 2 C -0.180 4.180 3 Si 0.896 3.104 4 H -0.208 1.208 5 H -0.214 1.214 6 H -0.214 1.214 7 C -0.600 4.600 8 H 0.074 0.926 9 C 0.015 3.985 10 C 0.038 3.962 11 O -0.238 6.238 12 C 0.319 3.681 13 O -0.401 6.401 14 C -0.209 4.209 15 C -0.006 4.006 16 C -0.314 4.314 17 C -0.142 4.142 18 C -0.182 4.182 19 C -0.396 4.396 20 S 0.523 5.477 21 C -0.228 4.228 22 C -0.207 4.207 23 H 0.084 0.916 24 H 0.082 0.918 25 H 0.055 0.945 26 H 0.165 0.835 27 H 0.165 0.835 28 H 0.156 0.844 29 H 0.150 0.850 30 H 0.177 0.823 31 H 0.102 0.898 32 H 0.086 0.914 33 H 0.087 0.913 34 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 1.356 -6.119 11.988 13.527 hybrid contribution -0.283 -3.343 0.270 3.366 sum 1.072 -9.462 12.258 15.522 Atomic orbital electron populations 1.70755 1.06777 1.31416 1.45239 1.25819 0.96543 1.02355 0.93308 0.83565 0.74929 0.75314 0.76618 1.20812 1.21373 1.21388 1.21199 0.94214 0.89234 1.55359 0.92618 1.19074 0.99236 0.95770 0.84465 1.22425 0.86797 0.97514 0.89503 1.86273 1.41166 1.69456 1.26880 1.20071 0.88543 0.76402 0.83056 1.90972 1.22302 1.49705 1.77151 1.21668 1.00380 1.05306 0.93539 1.20757 0.93583 0.92015 0.94282 1.22504 0.99098 0.99684 1.10083 1.20612 0.94447 0.98568 1.00523 1.19791 0.96590 0.96488 1.05363 1.25234 1.05277 1.00296 1.08836 1.83244 1.00652 1.11212 1.52629 1.22900 0.97955 0.95581 1.06356 1.22781 0.93159 1.02351 1.02424 0.91603 0.91832 0.94450 0.83487 0.83476 0.84366 0.84992 0.82350 0.89788 0.91391 0.91320 0.89185 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -26.74 13.57 55.43 0.75 -25.99 16 2 C 0.02 0.70 5.39 -17.82 -0.10 0.60 16 3 Si 1.07 24.88 29.91 -169.99 -5.08 19.79 16 4 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 5 H -0.29 -6.44 7.11 56.52 0.40 -6.04 16 6 H -0.29 -6.39 7.11 56.52 0.40 -5.99 16 7 C -0.56 -15.64 8.67 -34.44 -0.30 -15.94 16 8 H 0.06 1.57 7.82 -52.49 -0.41 1.16 16 9 C 0.02 0.38 1.21 -155.66 -0.19 0.19 16 10 C 0.11 2.68 5.22 37.16 0.19 2.87 16 11 O -0.32 -7.29 9.94 -41.31 -0.41 -7.70 16 12 C 0.47 9.17 7.23 31.86 0.23 9.41 16 13 O -0.51 -10.52 11.93 -19.44 -0.23 -10.75 16 14 C -0.19 -2.73 9.95 -39.33 -0.39 -3.12 16 15 C 0.01 0.17 9.87 -39.22 -0.39 -0.22 16 16 C -0.20 -2.75 4.34 -38.76 -0.17 -2.92 16 17 C -0.11 -1.40 10.25 -40.30 -0.41 -1.81 16 18 C -0.15 -1.88 10.14 -41.41 -0.42 -2.30 16 19 C -0.26 -3.44 10.92 29.21 0.32 -3.12 16 20 S 0.25 3.81 20.08 -107.50 -2.16 1.65 16 21 C -0.19 -4.21 9.95 -26.69 -0.27 -4.48 16 22 C -0.17 -3.92 8.63 -26.69 -0.23 -4.15 16 23 H 0.27 7.98 6.22 -40.82 -0.25 7.73 16 24 H 0.06 1.65 7.93 -51.93 -0.41 1.24 16 25 H 0.04 0.85 7.98 -51.93 -0.41 0.43 16 26 H 0.15 1.79 8.06 -52.49 -0.42 1.37 16 27 H 0.15 1.18 8.06 -52.49 -0.42 0.76 16 28 H 0.14 1.40 8.06 -52.48 -0.42 0.97 16 29 H 0.13 1.32 8.06 -52.48 -0.42 0.90 16 30 H 0.16 1.76 8.06 -52.48 -0.42 1.33 16 31 H 0.08 1.82 8.14 -51.93 -0.42 1.40 16 32 H 0.07 1.37 8.14 -51.93 -0.42 0.94 16 33 H 0.07 1.46 8.14 -51.93 -0.42 1.04 16 34 H 0.09 2.18 8.14 -51.93 -0.42 1.76 16 LS Contribution 311.31 15.07 4.69 4.69 Total: -1.00 -31.85 311.31 -8.65 -40.50 By element: Atomic # 1 Polarization: 6.89 SS G_CDS: -4.09 Total: 2.80 kcal Atomic # 6 Polarization: -22.87 SS G_CDS: -2.12 Total: -24.99 kcal Atomic # 7 Polarization: -26.74 SS G_CDS: 0.75 Total: -25.99 kcal Atomic # 8 Polarization: -17.81 SS G_CDS: -0.64 Total: -18.45 kcal Atomic # 14 Polarization: 24.88 SS G_CDS: -5.08 Total: 19.79 kcal Atomic # 16 Polarization: 3.81 SS G_CDS: -2.16 Total: 1.65 kcal Total LS contribution 4.69 Total: 4.69 kcal Total: -31.85 -8.65 -40.50 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000255580787.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.976 kcal (2) G-P(sol) polarization free energy of solvation -31.849 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.127 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.648 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.496 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.521 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds