Wall clock time and date at job start Tue Mar 31 2020 00:00:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86803 * 119.99846 * 2 1 4 4 H 1.48501 * 109.46987 * 359.97438 * 3 2 1 5 5 H 1.48502 * 109.47144 * 120.00137 * 3 2 1 6 6 H 1.48501 * 109.46899 * 239.99892 * 3 2 1 7 7 C 1.37868 * 120.00145 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00243 * 185.76101 * 7 2 1 9 9 C 1.50702 * 120.00285 * 5.76468 * 7 2 1 10 10 C 1.53001 * 115.54470 * 274.84026 * 9 7 2 11 11 O 1.42898 * 109.47632 * 300.19560 * 10 9 7 12 12 C 1.34997 * 117.00390 * 184.91490 * 11 10 9 13 13 O 1.21720 * 120.00197 * 359.97438 * 12 11 10 14 14 C 1.41222 * 119.99997 * 179.97438 * 12 11 10 15 15 C 1.35786 * 119.99842 * 173.26417 * 14 12 11 16 16 C 1.41500 * 119.99876 * 347.08725 * 15 14 12 17 17 C 1.37091 * 125.47372 * 130.85614 * 16 15 14 18 18 C 1.37399 * 113.21835 * 179.79440 * 17 16 15 19 19 C 1.33893 * 115.12994 * 0.49513 * 18 17 16 20 20 S 1.70606 * 111.01819 * 359.72345 * 19 18 17 21 21 C 1.52997 * 117.50270 * 129.17207 * 9 7 2 22 22 C 1.52993 * 117.50020 * 60.50483 * 9 7 2 23 23 H 0.96996 * 119.99638 * 175.13372 * 1 2 3 24 24 H 1.09000 * 109.47260 * 60.19840 * 10 9 7 25 25 H 1.08999 * 109.46927 * 180.19536 * 10 9 7 26 26 H 1.07997 * 119.99909 * 353.26774 * 14 12 11 27 27 H 1.08002 * 119.99395 * 167.08440 * 15 14 12 28 28 H 1.08003 * 123.39574 * 359.96103 * 17 16 15 29 29 H 1.08005 * 122.43721 * 180.21653 * 18 17 16 30 30 H 1.08004 * 124.48856 * 179.70397 * 19 18 17 31 31 H 1.08997 * 117.49739 * 359.97438 * 21 9 7 32 32 H 1.08995 * 117.50004 * 145.02572 * 21 9 7 33 33 H 1.08996 * 117.50447 * 214.98204 * 22 9 7 34 34 H 1.09002 * 117.50012 * 359.97438 * 22 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 1.2841 2.7465 -0.0006 5 1 3.1029 1.6965 1.2125 6 1 3.1029 1.6964 -1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0805 -1.1963 0.0944 9 6 1.2568 -2.4959 -0.1300 10 6 0.7092 -3.0760 1.1756 11 8 1.7892 -3.3170 2.0799 12 6 1.4877 -3.9260 3.2463 13 8 0.3376 -4.2430 3.4879 14 6 2.5066 -4.1954 4.1862 15 6 2.1872 -4.6817 5.4131 16 6 0.8426 -4.6633 5.8533 17 6 0.1688 -5.7264 6.3968 18 6 -1.1273 -5.4273 6.7414 19 6 -1.5090 -4.1704 6.4819 20 16 -0.2349 -3.2755 5.7844 21 6 1.7383 -3.4835 -1.1947 22 6 0.4319 -2.7125 -1.4001 23 1 -0.4849 -0.8370 -0.0713 24 1 0.0116 -2.3682 1.6233 25 1 0.1929 -4.0132 0.9684 26 1 3.5399 -4.0145 3.9292 27 1 2.9596 -5.0826 6.0528 28 1 0.6128 -6.7001 6.5422 29 1 -1.7913 -6.1545 7.1849 30 1 -2.4932 -3.7756 6.6867 31 1 2.5956 -3.1914 -1.8011 32 1 1.6645 -4.5465 -0.9653 33 1 -0.5007 -3.2687 -1.3058 34 1 0.4296 -1.9132 -2.1412 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000255580787.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:00:24 Heat of formation + Delta-G solvation = -19.329000 kcal Electronic energy + Delta-G solvation = -18919.744937 eV Core-core repulsion = 15910.489541 eV Total energy + Delta-G solvation = -3009.255396 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 278.076 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.59585 -39.25622 -38.59081 -37.15019 -34.92447 -33.98434 -30.31095 -28.65538 -26.98270 -25.90211 -23.98190 -23.14618 -21.51380 -21.09779 -20.48424 -18.97225 -18.85897 -17.92630 -17.36281 -16.79989 -16.19090 -15.69356 -15.57532 -15.43488 -14.71249 -14.60245 -14.12851 -13.98078 -13.87515 -13.61244 -13.28441 -13.08621 -12.78744 -12.64764 -12.29790 -11.94464 -11.86218 -11.69886 -11.59965 -11.34055 -10.79708 -10.51742 -10.47606 -10.37054 -9.40831 -9.01011 -8.56463 -6.29794 -0.74543 0.46493 0.87113 1.17080 1.54473 1.61798 1.76147 1.81173 2.02300 2.16368 2.58605 3.20062 3.22526 3.86365 3.95164 4.02288 4.17678 4.20880 4.28312 4.43762 4.46733 4.52494 4.61880 4.64149 4.76130 4.83742 4.95577 5.13570 5.17233 5.23060 5.37947 5.38797 5.59685 5.68816 6.13357 6.21734 6.66676 6.88112 7.51203 8.83620 Molecular weight = 278.08amu Principal moments of inertia in cm(-1) A = 0.022048 B = 0.004905 C = 0.004615 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1269.653217 B = 5707.170724 C = 6066.232976 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C -0.021 4.021 3 Si 1.110 2.890 4 H -0.286 1.286 5 H -0.274 1.274 6 H -0.269 1.269 7 C -0.572 4.572 8 H 0.045 0.955 9 C -0.022 4.022 10 C 0.129 3.871 11 O -0.343 6.343 12 C 0.465 3.535 13 O -0.529 6.529 14 C -0.221 4.221 15 C 0.054 3.946 16 C -0.215 4.215 17 C -0.100 4.100 18 C -0.153 4.153 19 C -0.258 4.258 20 S 0.172 5.828 21 C -0.165 4.165 22 C -0.166 4.166 23 H 0.263 0.737 24 H 0.028 0.972 25 H 0.045 0.955 26 H 0.170 0.830 27 H 0.201 0.799 28 H 0.172 0.828 29 H 0.162 0.838 30 H 0.175 0.825 31 H 0.087 0.913 32 H 0.092 0.908 33 H 0.085 0.915 34 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.020 -11.089 13.727 17.903 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.221 4.221 3 Si 0.932 3.068 4 H -0.211 1.211 5 H -0.200 1.200 6 H -0.194 1.194 7 C -0.609 4.609 8 H 0.064 0.936 9 C -0.022 4.022 10 C 0.055 3.945 11 O -0.259 6.259 12 C 0.314 3.686 13 O -0.423 6.423 14 C -0.243 4.243 15 C 0.034 3.966 16 C -0.333 4.333 17 C -0.131 4.131 18 C -0.184 4.184 19 C -0.395 4.395 20 S 0.443 5.557 21 C -0.202 4.202 22 C -0.204 4.204 23 H 0.073 0.927 24 H 0.046 0.954 25 H 0.063 0.937 26 H 0.187 0.813 27 H 0.218 0.782 28 H 0.189 0.811 29 H 0.180 0.820 30 H 0.192 0.808 31 H 0.106 0.894 32 H 0.111 0.889 33 H 0.103 0.897 34 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 2.555 -8.003 13.336 15.762 hybrid contribution -0.736 -2.910 0.006 3.001 sum 1.820 -10.913 13.343 17.333 Atomic orbital electron populations 1.70860 1.07675 1.30878 1.47496 1.27126 0.96606 1.05775 0.92551 0.83026 0.74221 0.71671 0.77859 1.21109 1.19963 1.19388 1.21445 0.93936 0.90797 1.54742 0.93646 1.19185 1.01087 0.96228 0.85722 1.21980 0.86636 0.96695 0.89232 1.86267 1.40726 1.70702 1.28236 1.20928 0.89575 0.75482 0.82568 1.90956 1.23399 1.50780 1.77160 1.21743 1.00080 1.08698 0.93783 1.21350 0.93859 0.88101 0.93278 1.22795 0.99860 0.99342 1.11301 1.21084 0.94361 0.99341 0.98347 1.20240 0.97146 0.96534 1.04512 1.25471 1.05190 1.00449 1.08396 1.83568 1.03365 1.13985 1.54816 1.22921 0.97224 0.96275 1.03829 1.22714 0.94523 1.02298 1.00837 0.92704 0.95362 0.93678 0.81284 0.78227 0.81051 0.82033 0.80793 0.89440 0.88921 0.89689 0.90887 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.60 13.57 21.44 0.29 -56.31 16 2 C -0.02 -1.21 5.39 84.65 0.46 -0.76 16 3 Si 1.11 50.46 29.91 68.60 2.05 52.51 16 4 H -0.29 -13.02 7.11 99.48 0.71 -12.31 16 5 H -0.27 -11.77 7.11 99.48 0.71 -11.06 16 6 H -0.27 -11.31 7.11 99.48 0.71 -10.60 16 7 C -0.57 -32.36 8.67 25.60 0.22 -32.14 16 8 H 0.05 2.59 7.82 -2.91 -0.02 2.57 16 9 C -0.02 -1.11 1.21 -52.93 -0.06 -1.17 16 10 C 0.13 6.38 5.22 71.98 0.38 6.76 16 11 O -0.34 -15.86 9.94 -59.15 -0.59 -16.44 16 12 C 0.47 18.22 7.23 68.55 0.50 18.72 16 13 O -0.53 -22.24 11.93 19.11 0.23 -22.01 16 14 C -0.22 -6.15 9.95 22.43 0.22 -5.93 16 15 C 0.05 1.15 9.87 22.51 0.22 1.37 16 16 C -0.22 -5.62 4.34 22.80 0.10 -5.52 16 17 C -0.10 -2.20 10.25 21.80 0.22 -1.98 16 18 C -0.15 -3.40 10.14 21.08 0.21 -3.18 16 19 C -0.26 -6.59 10.92 66.83 0.73 -5.86 16 20 S 0.17 5.28 20.08 -56.49 -1.13 4.14 16 21 C -0.17 -7.15 9.95 30.62 0.30 -6.84 16 22 C -0.17 -7.72 8.63 30.62 0.26 -7.45 16 23 H 0.26 16.00 6.22 -92.71 -0.58 15.42 16 24 H 0.03 1.55 7.93 -2.39 -0.02 1.53 16 25 H 0.05 2.09 7.98 -2.39 -0.02 2.07 16 26 H 0.17 3.82 8.06 -2.91 -0.02 3.80 16 27 H 0.20 2.12 8.06 -2.91 -0.02 2.10 16 28 H 0.17 2.59 8.06 -2.91 -0.02 2.57 16 29 H 0.16 2.61 8.06 -2.91 -0.02 2.58 16 30 H 0.17 3.71 8.06 -2.91 -0.02 3.68 16 31 H 0.09 3.69 8.14 -2.39 -0.02 3.67 16 32 H 0.09 3.53 8.14 -2.39 -0.02 3.51 16 33 H 0.08 3.61 8.14 -2.39 -0.02 3.59 16 34 H 0.07 3.60 8.14 -2.39 -0.02 3.59 16 Total: -1.00 -71.28 311.31 5.90 -65.37 By element: Atomic # 1 Polarization: 15.42 SS G_CDS: 1.29 Total: 16.71 kcal Atomic # 6 Polarization: -47.74 SS G_CDS: 3.77 Total: -43.98 kcal Atomic # 7 Polarization: -56.60 SS G_CDS: 0.29 Total: -56.31 kcal Atomic # 8 Polarization: -38.09 SS G_CDS: -0.36 Total: -38.45 kcal Atomic # 14 Polarization: 50.46 SS G_CDS: 2.05 Total: 52.51 kcal Atomic # 16 Polarization: 5.28 SS G_CDS: -1.13 Total: 4.14 kcal Total: -71.28 5.90 -65.37 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000255580787.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.044 kcal (2) G-P(sol) polarization free energy of solvation -71.276 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.232 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.903 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.373 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.329 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds