Wall clock time and date at job start Mon Mar 30 2020 23:56:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86792 * 120.00490 * 2 1 4 4 H 1.48500 * 109.47081 * 270.00416 * 3 2 1 5 5 H 1.48504 * 109.46951 * 30.00099 * 3 2 1 6 6 H 1.48496 * 109.47303 * 149.99783 * 3 2 1 7 7 C 1.37883 * 119.99446 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99749 * 0.02562 * 7 2 1 9 9 C 1.50698 * 119.99658 * 180.02562 * 7 2 1 10 10 C 1.53001 * 109.46752 * 180.02562 * 9 7 2 11 11 O 1.42898 * 109.46813 * 180.02562 * 10 9 7 12 12 C 1.35008 * 117.00103 * 179.97438 * 11 10 9 13 13 O 1.21735 * 119.99720 * 0.02562 * 12 11 10 14 14 C 1.41051 * 120.00148 * 179.97438 * 12 11 10 15 15 C 1.35227 * 120.00311 * 180.02562 * 14 12 11 16 16 S 1.76201 * 119.99405 * 359.72780 * 15 14 12 17 17 C 1.76204 * 99.99673 * 174.83717 * 16 15 14 18 18 C 1.38939 * 120.07588 * 272.76296 * 17 16 15 19 19 C 1.38094 * 119.91912 * 179.74601 * 18 17 16 20 20 C 1.38298 * 120.07483 * 0.53186 * 19 18 17 21 21 C 1.38299 * 120.15763 * 359.72063 * 20 19 18 22 22 C 1.38088 * 120.07356 * 0.02573 * 21 20 19 23 23 H 0.97004 * 119.99851 * 359.97438 * 1 2 3 24 24 H 1.09000 * 109.47081 * 60.00373 * 9 7 2 25 25 H 1.09000 * 109.47237 * 299.99764 * 9 7 2 26 26 H 1.08991 * 109.47477 * 59.99893 * 10 9 7 27 27 H 1.09000 * 109.46755 * 299.99690 * 10 9 7 28 28 H 1.08008 * 120.00128 * 0.02562 * 14 12 11 29 29 H 1.07997 * 120.00345 * 180.02562 * 15 14 12 30 30 H 1.07992 * 120.03917 * 359.97438 * 18 17 16 31 31 H 1.07998 * 119.96099 * 180.28051 * 19 18 17 32 32 H 1.08005 * 119.92460 * 179.70165 * 20 19 18 33 33 H 1.07993 * 119.96687 * 179.97438 * 21 20 19 34 34 H 1.08004 * 120.03833 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4467 2.6526 0.7001 6 1 3.5467 1.4400 0.7001 7 6 2.0044 -1.1942 0.0005 8 1 1.4643 -2.1294 0.0005 9 6 3.5114 -1.1942 0.0011 10 6 4.0213 -2.6368 0.0010 11 8 5.4503 -2.6369 0.0021 12 6 6.0631 -3.8398 0.0027 13 8 5.4001 -4.8607 0.0018 14 6 7.4717 -3.9137 0.0033 15 6 8.0856 -5.1186 0.0034 16 16 7.1258 -6.5962 0.0100 17 6 8.4080 -7.7945 -0.1487 18 6 8.8589 -8.1691 -1.4083 19 6 9.8675 -9.1046 -1.5287 20 6 10.4210 -9.6765 -0.3977 21 6 9.9709 -9.3098 0.8575 22 6 8.9663 -8.3711 0.9855 23 1 -0.4850 0.8401 0.0004 24 1 3.8744 -0.6803 0.8912 25 1 3.8751 -0.6806 -0.8889 26 1 3.6583 -3.1504 -0.8891 27 1 3.6576 -3.1507 0.8908 28 1 8.0600 -3.0079 0.0037 29 1 9.1641 -5.1752 0.0043 30 1 8.4237 -7.7264 -2.2920 31 1 10.2217 -9.3929 -2.5074 32 1 11.2064 -10.4115 -0.4949 33 1 10.4050 -9.7587 1.7386 34 1 8.6149 -8.0855 1.9660 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000255884712.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:56:54 Heat of formation + Delta-G solvation = -43.288355 kcal Electronic energy + Delta-G solvation = -17484.479193 eV Core-core repulsion = 14474.184842 eV Total energy + Delta-G solvation = -3010.294351 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 278.076 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.16058 -39.25500 -36.51933 -33.32750 -33.07333 -31.35902 -31.32882 -30.66772 -25.98863 -23.99764 -22.99758 -22.95944 -20.65242 -20.12322 -18.17019 -17.87269 -16.92243 -16.36037 -16.05489 -15.88882 -15.35972 -14.57373 -14.53208 -14.08873 -13.84366 -13.58737 -13.52184 -13.13111 -12.71686 -12.36736 -11.72485 -11.64727 -11.54642 -11.29423 -11.22707 -10.80295 -10.60732 -10.27041 -9.90601 -9.67649 -9.61740 -9.36341 -9.30976 -9.10160 -8.58935 -7.80324 -6.09547 -4.10179 0.55233 0.80977 0.98359 1.59085 2.31900 3.16874 3.30442 3.34515 3.37397 3.42428 3.44168 4.41754 4.48160 4.57017 4.67275 4.84601 5.03309 5.09284 5.24066 5.34338 5.36283 5.59413 5.68737 5.84312 5.94161 5.96074 6.04476 6.04737 6.05112 6.49298 6.52674 6.84445 7.24139 7.27243 7.66594 8.16936 8.43978 8.92770 9.50297 11.03107 Molecular weight = 278.08amu Principal moments of inertia in cm(-1) A = 0.058810 B = 0.002674 C = 0.002634 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 475.994315 B =10468.434036 C =10627.182404 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.071 3.929 3 Si 0.882 3.118 4 H -0.275 1.275 5 H -0.286 1.286 6 H -0.263 1.263 7 C -0.526 4.526 8 H 0.075 0.925 9 C -0.009 4.009 10 C 0.080 3.920 11 O -0.350 6.350 12 C 0.482 3.518 13 O -0.497 6.497 14 C -0.194 4.194 15 C -0.101 4.101 16 S 0.129 5.871 17 C -0.205 4.205 18 C -0.067 4.067 19 C -0.132 4.132 20 C -0.096 4.096 21 C -0.132 4.132 22 C -0.068 4.068 23 H 0.265 0.735 24 H 0.027 0.973 25 H 0.023 0.977 26 H 0.062 0.938 27 H 0.062 0.938 28 H 0.151 0.849 29 H 0.149 0.851 30 H 0.131 0.869 31 H 0.127 0.873 32 H 0.125 0.875 33 H 0.126 0.874 34 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 24.061 -16.876 -0.419 29.392 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.131 4.131 3 Si 0.708 3.292 4 H -0.201 1.201 5 H -0.212 1.212 6 H -0.188 1.188 7 C -0.564 4.564 8 H 0.094 0.906 9 C -0.047 4.047 10 C 0.007 3.993 11 O -0.266 6.266 12 C 0.329 3.671 13 O -0.392 6.392 14 C -0.228 4.228 15 C -0.235 4.235 16 S 0.380 5.620 17 C -0.314 4.314 18 C -0.087 4.087 19 C -0.151 4.151 20 C -0.114 4.114 21 C -0.152 4.152 22 C -0.088 4.088 23 H 0.075 0.925 24 H 0.046 0.954 25 H 0.041 0.959 26 H 0.081 0.919 27 H 0.081 0.919 28 H 0.168 0.832 29 H 0.166 0.834 30 H 0.149 0.851 31 H 0.145 0.855 32 H 0.143 0.857 33 H 0.144 0.856 34 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 22.468 -17.339 -0.328 28.382 hybrid contribution 1.771 1.009 -0.125 2.042 sum 24.239 -16.329 -0.453 29.230 Atomic orbital electron populations 1.69902 1.06273 1.27140 1.50295 1.24949 0.94776 0.99187 0.94208 0.86745 0.80432 0.83281 0.78707 1.20090 1.21220 1.18753 1.20867 0.88365 0.95009 1.52117 0.90644 1.19623 0.97001 0.90228 0.97801 1.22955 0.73243 1.01495 1.01653 1.86212 1.25890 1.31271 1.83213 1.19872 0.89871 0.82453 0.74864 1.90672 1.66471 1.35048 1.47021 1.20814 0.92346 0.98320 1.11345 1.26420 1.03562 0.97322 0.96193 1.86731 1.00405 0.90437 1.84395 1.23348 1.05457 1.06644 0.95947 1.21596 0.94809 0.95635 0.96637 1.21266 0.97301 0.97624 0.98958 1.21353 0.98870 0.98469 0.92692 1.21262 0.97787 0.98368 0.97770 1.21602 0.94264 0.94825 0.98109 0.92489 0.95432 0.95867 0.91948 0.91946 0.83161 0.83367 0.85114 0.85542 0.85744 0.85566 0.85126 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.67 13.96 55.43 0.77 -26.89 16 2 C 0.07 2.07 5.47 -17.82 -0.10 1.98 16 3 Si 0.88 21.67 27.47 -169.99 -4.67 17.00 16 4 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 5 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 6 H -0.26 -6.23 6.54 56.52 0.37 -5.86 16 7 C -0.53 -15.17 9.66 -34.44 -0.33 -15.50 16 8 H 0.08 2.33 7.99 -52.49 -0.42 1.91 16 9 C -0.01 -0.22 4.41 -27.88 -0.12 -0.35 16 10 C 0.08 1.75 5.32 37.16 0.20 1.95 16 11 O -0.35 -6.84 10.10 -41.34 -0.42 -7.26 16 12 C 0.48 8.32 7.66 31.80 0.24 8.56 16 13 O -0.50 -9.48 13.11 -19.45 -0.25 -9.74 16 14 C -0.19 -2.47 9.97 -39.59 -0.39 -2.86 16 15 C -0.10 -1.10 10.06 29.66 0.30 -0.80 16 16 S 0.13 1.62 18.58 -107.50 -2.00 -0.37 16 17 C -0.20 -2.08 5.45 -39.06 -0.21 -2.29 16 18 C -0.07 -0.60 9.79 -39.37 -0.39 -0.99 16 19 C -0.13 -0.98 10.04 -39.61 -0.40 -1.38 16 20 C -0.10 -0.65 10.04 -39.54 -0.40 -1.05 16 21 C -0.13 -0.97 10.04 -39.61 -0.40 -1.37 16 22 C -0.07 -0.60 9.79 -39.38 -0.39 -0.99 16 23 H 0.27 7.61 8.31 -40.82 -0.34 7.27 16 24 H 0.03 0.67 7.20 -51.93 -0.37 0.30 16 25 H 0.02 0.56 7.57 -51.93 -0.39 0.17 16 26 H 0.06 1.38 8.13 -51.93 -0.42 0.96 16 27 H 0.06 1.38 8.13 -51.93 -0.42 0.96 16 28 H 0.15 1.53 8.06 -52.48 -0.42 1.11 16 29 H 0.15 1.18 8.02 -52.49 -0.42 0.76 16 30 H 0.13 1.08 8.06 -52.49 -0.42 0.65 16 31 H 0.13 0.67 8.06 -52.49 -0.42 0.24 16 32 H 0.12 0.55 8.06 -52.48 -0.42 0.13 16 33 H 0.13 0.65 8.06 -52.49 -0.42 0.22 16 34 H 0.13 1.03 8.06 -52.48 -0.42 0.61 16 LS Contribution 315.35 15.07 4.75 4.75 Total: -1.00 -32.58 315.35 -8.35 -40.94 By element: Atomic # 1 Polarization: 0.83 SS G_CDS: -4.16 Total: -3.33 kcal Atomic # 6 Polarization: -12.71 SS G_CDS: -2.38 Total: -15.10 kcal Atomic # 7 Polarization: -27.67 SS G_CDS: 0.77 Total: -26.89 kcal Atomic # 8 Polarization: -16.32 SS G_CDS: -0.67 Total: -17.00 kcal Atomic # 14 Polarization: 21.67 SS G_CDS: -4.67 Total: 17.00 kcal Atomic # 16 Polarization: 1.62 SS G_CDS: -2.00 Total: -0.37 kcal Total LS contribution 4.75 Total: 4.75 kcal Total: -32.58 -8.35 -40.94 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000255884712.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.353 kcal (2) G-P(sol) polarization free energy of solvation -32.582 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.935 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.353 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.935 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.288 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds