Wall clock time and date at job start Mon Mar 30 2020 23:56:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86792 * 120.00490 * 2 1 4 4 H 1.48500 * 109.47081 * 270.00416 * 3 2 1 5 5 H 1.48504 * 109.46951 * 30.00099 * 3 2 1 6 6 H 1.48496 * 109.47303 * 149.99783 * 3 2 1 7 7 C 1.37883 * 119.99446 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99749 * 0.02562 * 7 2 1 9 9 C 1.50698 * 119.99658 * 180.02562 * 7 2 1 10 10 C 1.53001 * 109.46752 * 180.02562 * 9 7 2 11 11 O 1.42898 * 109.46813 * 180.02562 * 10 9 7 12 12 C 1.35008 * 117.00103 * 179.97438 * 11 10 9 13 13 O 1.21735 * 119.99720 * 0.02562 * 12 11 10 14 14 C 1.41051 * 120.00148 * 179.97438 * 12 11 10 15 15 C 1.35227 * 120.00311 * 180.02562 * 14 12 11 16 16 S 1.76201 * 119.99405 * 359.72780 * 15 14 12 17 17 C 1.76204 * 99.99673 * 174.83717 * 16 15 14 18 18 C 1.38939 * 120.07588 * 272.76296 * 17 16 15 19 19 C 1.38094 * 119.91912 * 179.74601 * 18 17 16 20 20 C 1.38298 * 120.07483 * 0.53186 * 19 18 17 21 21 C 1.38299 * 120.15763 * 359.72063 * 20 19 18 22 22 C 1.38088 * 120.07356 * 0.02573 * 21 20 19 23 23 H 0.97004 * 119.99851 * 359.97438 * 1 2 3 24 24 H 1.09000 * 109.47081 * 60.00373 * 9 7 2 25 25 H 1.09000 * 109.47237 * 299.99764 * 9 7 2 26 26 H 1.08991 * 109.47477 * 59.99893 * 10 9 7 27 27 H 1.09000 * 109.46755 * 299.99690 * 10 9 7 28 28 H 1.08008 * 120.00128 * 0.02562 * 14 12 11 29 29 H 1.07997 * 120.00345 * 180.02562 * 15 14 12 30 30 H 1.07992 * 120.03917 * 359.97438 * 18 17 16 31 31 H 1.07998 * 119.96099 * 180.28051 * 19 18 17 32 32 H 1.08005 * 119.92460 * 179.70165 * 20 19 18 33 33 H 1.07993 * 119.96687 * 179.97438 * 21 20 19 34 34 H 1.08004 * 120.03833 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4467 2.6526 0.7001 6 1 3.5467 1.4400 0.7001 7 6 2.0044 -1.1942 0.0005 8 1 1.4643 -2.1294 0.0005 9 6 3.5114 -1.1942 0.0011 10 6 4.0213 -2.6368 0.0010 11 8 5.4503 -2.6369 0.0021 12 6 6.0631 -3.8398 0.0027 13 8 5.4001 -4.8607 0.0018 14 6 7.4717 -3.9137 0.0033 15 6 8.0856 -5.1186 0.0034 16 16 7.1258 -6.5962 0.0100 17 6 8.4080 -7.7945 -0.1487 18 6 8.8589 -8.1691 -1.4083 19 6 9.8675 -9.1046 -1.5287 20 6 10.4210 -9.6765 -0.3977 21 6 9.9709 -9.3098 0.8575 22 6 8.9663 -8.3711 0.9855 23 1 -0.4850 0.8401 0.0004 24 1 3.8744 -0.6803 0.8912 25 1 3.8751 -0.6806 -0.8889 26 1 3.6583 -3.1504 -0.8891 27 1 3.6576 -3.1507 0.8908 28 1 8.0600 -3.0079 0.0037 29 1 9.1641 -5.1752 0.0043 30 1 8.4237 -7.7264 -2.2920 31 1 10.2217 -9.3929 -2.5074 32 1 11.2064 -10.4115 -0.4949 33 1 10.4050 -9.7587 1.7386 34 1 8.6149 -8.0855 1.9660 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000255884712.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:56:54 Heat of formation + Delta-G solvation = -61.299261 kcal Electronic energy + Delta-G solvation = -17485.260205 eV Core-core repulsion = 14474.184842 eV Total energy + Delta-G solvation = -3011.075363 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 278.076 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.56187 -39.85737 -38.01286 -35.37187 -34.22146 -32.68870 -31.94778 -31.94445 -27.70730 -25.43365 -23.73736 -23.55087 -22.59793 -21.30800 -19.54262 -18.80594 -18.57842 -17.69368 -17.59366 -16.71358 -16.35628 -15.99248 -15.53436 -15.23086 -15.19576 -14.86831 -14.46160 -14.40258 -13.94388 -13.52861 -13.38324 -13.09058 -12.64803 -12.50387 -12.37839 -12.17418 -12.04335 -11.80014 -11.72439 -11.52422 -11.37866 -10.80497 -10.70464 -9.96241 -9.84552 -8.82446 -8.33840 -6.41839 -0.24025 -0.12092 0.38682 0.74272 1.38496 1.40402 1.45484 1.53516 1.94050 2.04924 2.35242 2.74622 3.00774 3.84129 3.91395 4.04361 4.18360 4.20054 4.23572 4.36306 4.48774 4.50488 4.64397 4.71209 4.76343 4.84478 5.04056 5.11133 5.30190 5.33789 5.38431 5.48603 5.51786 5.61641 5.92941 6.16818 6.63974 6.76777 7.23020 8.82372 Molecular weight = 278.08amu Principal moments of inertia in cm(-1) A = 0.058810 B = 0.002674 C = 0.002634 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 475.994315 B =10468.434036 C =10627.182404 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.945 5.945 2 C 0.010 3.990 3 Si 0.956 3.044 4 H -0.263 1.263 5 H -0.280 1.280 6 H -0.244 1.244 7 C -0.542 4.542 8 H 0.034 0.966 9 C -0.003 4.003 10 C 0.094 3.906 11 O -0.354 6.354 12 C 0.474 3.526 13 O -0.526 6.526 14 C -0.212 4.212 15 C -0.066 4.066 16 S 0.073 5.927 17 C -0.211 4.211 18 C -0.081 4.081 19 C -0.133 4.133 20 C -0.093 4.093 21 C -0.133 4.133 22 C -0.081 4.081 23 H 0.271 0.729 24 H 0.035 0.965 25 H 0.034 0.966 26 H 0.052 0.948 27 H 0.051 0.949 28 H 0.181 0.819 29 H 0.185 0.815 30 H 0.131 0.869 31 H 0.149 0.851 32 H 0.154 0.846 33 H 0.150 0.850 34 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 27.933 -16.987 -0.514 32.697 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.584 5.584 2 C -0.188 4.188 3 Si 0.778 3.222 4 H -0.187 1.187 5 H -0.205 1.205 6 H -0.168 1.168 7 C -0.580 4.580 8 H 0.052 0.948 9 C -0.040 4.040 10 C 0.020 3.980 11 O -0.270 6.270 12 C 0.323 3.677 13 O -0.422 6.422 14 C -0.245 4.245 15 C -0.200 4.200 16 S 0.325 5.675 17 C -0.321 4.321 18 C -0.101 4.101 19 C -0.152 4.152 20 C -0.110 4.110 21 C -0.152 4.152 22 C -0.101 4.101 23 H 0.079 0.921 24 H 0.053 0.947 25 H 0.052 0.948 26 H 0.070 0.930 27 H 0.070 0.930 28 H 0.198 0.802 29 H 0.202 0.798 30 H 0.149 0.851 31 H 0.167 0.833 32 H 0.172 0.828 33 H 0.168 0.832 34 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 26.355 -17.472 -0.423 31.623 hybrid contribution 0.632 0.757 -0.102 0.991 sum 26.987 -16.715 -0.525 31.748 Atomic orbital electron populations 1.70050 1.08327 1.28612 1.51447 1.25986 0.95718 1.03661 0.93438 0.85575 0.79505 0.77549 0.79563 1.18735 1.20519 1.16759 1.21131 0.90792 0.93758 1.52326 0.94800 1.19465 0.94166 0.92016 0.98394 1.22467 0.75192 0.99656 1.00717 1.86180 1.23907 1.32966 1.83997 1.20669 0.91436 0.81256 0.74290 1.90697 1.67555 1.35583 1.48378 1.20884 0.89797 1.00174 1.13693 1.26728 1.04902 0.95621 0.92763 1.86969 1.03561 0.93108 1.83872 1.23089 1.05277 1.06696 0.97067 1.21707 0.95667 0.96571 0.96192 1.21564 0.96451 0.96752 1.00461 1.21757 0.98907 0.98249 0.92130 1.21573 0.96965 0.97557 0.99115 1.21731 0.94977 0.95532 0.97859 0.92059 0.94679 0.94778 0.92972 0.93018 0.80221 0.79757 0.85122 0.83303 0.82850 0.83218 0.84871 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -59.66 13.96 21.45 0.30 -59.36 16 2 C 0.01 0.58 5.47 84.66 0.46 1.04 16 3 Si 0.96 44.20 27.47 68.60 1.88 46.08 16 4 H -0.26 -11.57 7.11 99.48 0.71 -10.87 16 5 H -0.28 -12.56 7.11 99.48 0.71 -11.85 16 6 H -0.24 -10.49 6.54 99.48 0.65 -9.84 16 7 C -0.54 -32.24 9.66 25.60 0.25 -31.99 16 8 H 0.03 2.22 7.99 -2.91 -0.02 2.19 16 9 C 0.00 -0.15 4.41 29.85 0.13 -0.02 16 10 C 0.09 4.23 5.32 71.98 0.38 4.61 16 11 O -0.35 -13.79 10.10 -59.27 -0.60 -14.39 16 12 C 0.47 16.39 7.66 68.51 0.52 16.91 16 13 O -0.53 -20.70 13.11 19.06 0.25 -20.45 16 14 C -0.21 -5.07 9.97 22.27 0.22 -4.84 16 15 C -0.07 -1.32 10.06 67.13 0.68 -0.65 16 16 S 0.07 1.82 18.58 -56.49 -1.05 0.77 16 17 C -0.21 -4.08 5.45 22.61 0.12 -3.95 16 18 C -0.08 -1.35 9.79 22.40 0.22 -1.13 16 19 C -0.13 -1.60 10.04 22.25 0.22 -1.38 16 20 C -0.09 -0.94 10.04 22.30 0.22 -0.72 16 21 C -0.13 -1.56 10.04 22.25 0.22 -1.34 16 22 C -0.08 -1.31 9.79 22.40 0.22 -1.09 16 23 H 0.27 15.77 8.31 -92.71 -0.77 15.00 16 24 H 0.03 1.67 7.20 -2.39 -0.02 1.66 16 25 H 0.03 1.60 7.57 -2.39 -0.02 1.59 16 26 H 0.05 2.41 8.13 -2.39 -0.02 2.39 16 27 H 0.05 2.39 8.13 -2.39 -0.02 2.37 16 28 H 0.18 3.16 8.06 -2.91 -0.02 3.14 16 29 H 0.19 2.32 8.02 -2.91 -0.02 2.30 16 30 H 0.13 2.06 8.06 -2.91 -0.02 2.04 16 31 H 0.15 1.07 8.06 -2.91 -0.02 1.05 16 32 H 0.15 0.67 8.06 -2.91 -0.02 0.65 16 33 H 0.15 1.01 8.06 -2.91 -0.02 0.99 16 34 H 0.13 1.97 8.06 -2.91 -0.02 1.95 16 Total: -1.00 -72.85 315.35 5.70 -67.15 By element: Atomic # 1 Polarization: 3.71 SS G_CDS: 1.03 Total: 4.75 kcal Atomic # 6 Polarization: -28.42 SS G_CDS: 3.88 Total: -24.54 kcal Atomic # 7 Polarization: -59.66 SS G_CDS: 0.30 Total: -59.36 kcal Atomic # 8 Polarization: -34.49 SS G_CDS: -0.35 Total: -34.84 kcal Atomic # 14 Polarization: 44.20 SS G_CDS: 1.88 Total: 46.08 kcal Atomic # 16 Polarization: 1.82 SS G_CDS: -1.05 Total: 0.77 kcal Total: -72.85 5.70 -67.15 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000255884712.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.850 kcal (2) G-P(sol) polarization free energy of solvation -72.846 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.996 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.697 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.149 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.299 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds