Wall clock time and date at job start Tue Mar 31 2020 00:09:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53006 * 109.46641 * 2 1 4 4 H 1.08995 * 109.47255 * 54.27285 * 3 2 1 5 5 C 1.50702 * 109.46971 * 174.27236 * 3 2 1 6 6 H 1.07997 * 120.00670 * 120.00160 * 5 3 2 7 7 C 1.37879 * 119.99681 * 299.99649 * 5 3 2 8 8 N 1.31517 * 120.00084 * 180.02562 * 7 5 3 9 9 Si 1.86795 * 120.00067 * 0.02562 * 7 5 3 10 10 H 1.48504 * 109.47158 * 90.00297 * 9 7 5 11 11 H 1.48504 * 109.47188 * 209.99724 * 9 7 5 12 12 H 1.48497 * 109.47584 * 329.99893 * 9 7 5 13 13 N 1.46901 * 109.47265 * 294.26698 * 3 2 1 14 14 C 1.39518 * 111.00173 * 153.68805 * 13 3 2 15 15 C 1.39483 * 120.84572 * 277.51991 * 14 13 3 16 16 F 1.35101 * 120.44705 * 359.97344 * 15 14 13 17 17 C 1.38325 * 119.09808 * 179.72728 * 15 14 13 18 18 F 1.35102 * 119.59281 * 180.28973 * 17 15 14 19 19 N 1.32208 * 120.81873 * 0.55383 * 17 15 14 20 20 C 1.32214 * 121.85215 * 359.71706 * 19 17 15 21 21 F 1.35091 * 119.59099 * 180.02562 * 20 19 17 22 22 C 1.38324 * 120.81654 * 359.97438 * 20 19 17 23 23 F 1.35095 * 120.45198 * 180.02562 * 22 20 19 24 24 H 1.08998 * 109.47845 * 64.89462 * 1 2 3 25 25 H 1.09004 * 109.46486 * 184.89604 * 1 2 3 26 26 H 1.09005 * 109.47333 * 304.88917 * 1 2 3 27 27 H 1.08997 * 109.47183 * 240.00370 * 2 1 3 28 28 H 1.08998 * 109.47784 * 119.99685 * 2 1 3 29 29 H 0.96998 * 120.00099 * 180.02562 * 8 7 5 30 30 H 1.00906 * 110.99740 * 29.73429 * 13 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.5952 1.9851 0.8342 5 6 3.5402 1.4451 0.1418 6 1 4.1548 1.8864 -0.6288 7 6 4.1283 0.8839 1.2555 8 7 5.4376 0.8865 1.3796 9 14 3.0653 0.1201 2.5882 10 1 2.8483 -1.3174 2.2850 11 1 3.7469 0.2515 3.9010 12 1 1.7559 0.8186 2.6381 13 7 1.6664 2.0940 -1.2626 14 6 1.5607 3.4757 -1.1003 15 6 0.3965 4.0486 -0.5883 16 9 -0.6528 3.2721 -0.2401 17 6 0.3330 5.4221 -0.4372 18 9 -0.7875 5.9871 0.0632 19 7 1.3532 6.1893 -0.7813 20 6 2.4708 5.6840 -1.2750 21 9 3.4853 6.5105 -1.6110 22 6 2.6147 4.3196 -1.4506 23 9 3.7601 3.8112 -1.9552 24 1 -0.3635 0.4360 -0.9305 25 1 -0.3632 -1.0240 0.0877 26 1 -0.3634 0.5878 0.8430 27 1 1.8933 -0.5138 -0.8900 28 1 1.8934 -0.5138 0.8900 29 1 5.8513 0.4914 2.1629 30 1 0.8102 1.7065 -1.6299 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000273834476.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:09:09 Heat of formation + Delta-G solvation = -118.615052 kcal Electronic energy + Delta-G solvation = -22382.898841 eV Core-core repulsion = 18293.560914 eV Total energy + Delta-G solvation = -4089.337927 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 278.074 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -49.71964 -49.46497 -48.80104 -48.41699 -40.03763 -37.26402 -33.59744 -32.13148 -30.15338 -29.90535 -27.45093 -23.89529 -23.65842 -22.56111 -20.42939 -19.32679 -18.61337 -18.22954 -17.23547 -16.97480 -16.76009 -16.29057 -15.98016 -15.66069 -15.40394 -14.93299 -14.72564 -14.54005 -14.38125 -13.93236 -13.73590 -13.31550 -12.78202 -12.71209 -12.38094 -12.22663 -12.04446 -11.45280 -10.89767 -10.67141 -10.45964 -10.44243 -9.87764 -9.51436 -9.40855 -8.79574 -8.71467 -8.28636 -6.21814 -4.23327 0.30487 0.52774 2.56367 2.89906 3.11953 3.22048 3.26268 3.32359 3.56448 3.99276 4.21170 4.23489 4.56961 4.98807 5.03952 5.19302 5.53453 5.60923 5.63234 5.73233 6.19248 6.21387 6.32707 6.36733 6.49787 6.81142 6.85003 7.23867 7.35962 7.62600 8.39894 8.91067 9.36803 10.90323 Molecular weight = 278.07amu Principal moments of inertia in cm(-1) A = 0.017351 B = 0.008149 C = 0.006560 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1613.361448 B = 3435.218189 C = 4267.153458 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.137 4.137 3 C 0.196 3.804 4 H 0.014 0.986 5 C -0.518 4.518 6 H 0.093 0.907 7 C 0.076 3.924 8 N -0.887 5.887 9 Si 0.875 3.125 10 H -0.274 1.274 11 H -0.293 1.293 12 H -0.267 1.267 13 N -0.621 5.621 14 C 0.163 3.837 15 C 0.000 4.000 16 F -0.107 7.107 17 C 0.313 3.687 18 F -0.093 7.093 19 N -0.507 5.507 20 C 0.311 3.689 21 F -0.087 7.087 22 C 0.085 3.915 23 F -0.081 7.081 24 H 0.049 0.951 25 H 0.051 0.949 26 H 0.050 0.950 27 H 0.075 0.925 28 H 0.064 0.936 29 H 0.267 0.733 30 H 0.352 0.648 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.447 4.841 -4.534 12.375 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.175 4.175 3 C 0.091 3.909 4 H 0.031 0.969 5 C -0.556 4.556 6 H 0.111 0.889 7 C -0.128 4.128 8 N -0.524 5.524 9 Si 0.705 3.295 10 H -0.201 1.201 11 H -0.220 1.220 12 H -0.192 1.192 13 N -0.252 5.252 14 C 0.054 3.946 15 C -0.027 4.027 16 F -0.086 7.086 17 C 0.157 3.843 18 F -0.072 7.072 19 N -0.227 5.227 20 C 0.156 3.844 21 F -0.066 7.066 22 C 0.059 3.941 23 F -0.059 7.059 24 H 0.068 0.932 25 H 0.070 0.930 26 H 0.069 0.931 27 H 0.094 0.906 28 H 0.082 0.918 29 H 0.077 0.923 30 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges -9.690 5.611 -4.541 12.083 hybrid contribution -1.227 -1.158 1.237 2.092 sum -10.917 4.453 -3.304 12.245 Atomic orbital electron populations 1.21953 0.97603 1.01209 1.01024 1.22165 0.93395 0.99087 1.02816 1.19934 0.98288 0.89860 0.82780 0.96854 1.21031 0.88176 1.39411 1.06976 0.88876 1.24905 0.94813 0.95535 0.97515 1.69859 1.08896 1.44505 1.29164 0.87053 0.80848 0.80049 0.81593 1.20121 1.21998 1.19165 1.57967 1.38486 0.96657 1.32043 1.18905 0.89264 0.93522 0.92880 1.18960 0.89062 0.87766 1.06932 1.91563 1.53643 1.73703 1.89682 1.17162 0.83720 0.85508 0.97861 1.91690 1.45854 1.85719 1.83912 1.66241 0.99967 1.40354 1.16170 1.17213 0.84619 0.84130 0.98400 1.91708 1.54261 1.71736 1.88887 1.17862 0.85682 0.88644 1.01905 1.91664 1.44332 1.86771 1.83110 0.93194 0.92986 0.93109 0.90611 0.91826 0.92320 0.82380 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.46 9.67 37.16 0.36 -2.10 16 2 C -0.14 -2.63 5.00 -26.73 -0.13 -2.77 16 3 C 0.20 4.19 1.58 -68.86 -0.11 4.08 16 4 H 0.01 0.31 6.74 -51.93 -0.35 -0.04 16 5 C -0.52 -13.56 9.28 -34.44 -0.32 -13.88 16 6 H 0.09 2.69 6.80 -52.49 -0.36 2.33 16 7 C 0.08 2.06 5.45 -17.82 -0.10 1.97 16 8 N -0.89 -25.94 13.96 55.43 0.77 -25.17 16 9 Si 0.87 20.53 24.41 -169.99 -4.15 16.38 16 10 H -0.27 -6.21 6.83 56.52 0.39 -5.83 16 11 H -0.29 -6.99 7.11 56.52 0.40 -6.58 16 12 H -0.27 -5.98 6.53 56.52 0.37 -5.61 16 13 N -0.62 -11.39 6.10 -52.76 -0.32 -11.71 16 14 C 0.16 2.82 5.07 -83.43 -0.42 2.39 16 15 C 0.00 0.00 7.14 -39.09 -0.28 -0.28 16 16 F -0.11 -1.61 16.84 2.25 0.04 -1.57 16 17 C 0.31 4.77 8.41 -17.36 -0.15 4.62 16 18 F -0.09 -1.33 17.20 2.25 0.04 -1.29 16 19 N -0.51 -8.10 10.38 -13.96 -0.14 -8.25 16 20 C 0.31 5.04 8.41 -17.36 -0.15 4.90 16 21 F -0.09 -1.37 17.20 2.25 0.04 -1.33 16 22 C 0.08 1.49 7.36 -39.08 -0.29 1.20 16 23 F -0.08 -1.59 15.82 2.25 0.04 -1.55 16 24 H 0.05 0.66 6.63 -51.93 -0.34 0.32 16 25 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 26 H 0.05 0.80 8.14 -51.93 -0.42 0.37 16 27 H 0.08 1.42 8.14 -51.93 -0.42 1.00 16 28 H 0.06 1.33 3.21 -51.93 -0.17 1.17 16 29 H 0.27 7.33 8.31 -40.82 -0.34 6.99 16 30 H 0.35 5.46 6.32 -39.29 -0.25 5.21 16 LS Contribution 272.17 15.07 4.10 4.10 Total: -1.00 -27.56 272.17 -3.09 -30.65 By element: Atomic # 1 Polarization: 1.53 SS G_CDS: -1.92 Total: -0.39 kcal Atomic # 6 Polarization: 1.71 SS G_CDS: -1.58 Total: 0.12 kcal Atomic # 7 Polarization: -45.43 SS G_CDS: 0.31 Total: -45.12 kcal Atomic # 9 Polarization: -5.90 SS G_CDS: 0.15 Total: -5.75 kcal Atomic # 14 Polarization: 20.53 SS G_CDS: -4.15 Total: 16.38 kcal Total LS contribution 4.10 Total: 4.10 kcal Total: -27.56 -3.09 -30.65 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273834476.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -87.963 kcal (2) G-P(sol) polarization free energy of solvation -27.563 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.526 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.089 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -30.653 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.615 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds