Wall clock time and date at job start Tue Mar 31 2020 00:09:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53006 * 109.46641 * 2 1 4 4 H 1.08995 * 109.47255 * 54.27285 * 3 2 1 5 5 C 1.50702 * 109.46971 * 174.27236 * 3 2 1 6 6 H 1.07997 * 120.00670 * 120.00160 * 5 3 2 7 7 C 1.37879 * 119.99681 * 299.99649 * 5 3 2 8 8 N 1.31517 * 120.00084 * 180.02562 * 7 5 3 9 9 Si 1.86795 * 120.00067 * 0.02562 * 7 5 3 10 10 H 1.48504 * 109.47158 * 90.00297 * 9 7 5 11 11 H 1.48504 * 109.47188 * 209.99724 * 9 7 5 12 12 H 1.48497 * 109.47584 * 329.99893 * 9 7 5 13 13 N 1.46901 * 109.47265 * 294.26698 * 3 2 1 14 14 C 1.39518 * 111.00173 * 153.68805 * 13 3 2 15 15 C 1.39483 * 120.84572 * 277.51991 * 14 13 3 16 16 F 1.35101 * 120.44705 * 359.97344 * 15 14 13 17 17 C 1.38325 * 119.09808 * 179.72728 * 15 14 13 18 18 F 1.35102 * 119.59281 * 180.28973 * 17 15 14 19 19 N 1.32208 * 120.81873 * 0.55383 * 17 15 14 20 20 C 1.32214 * 121.85215 * 359.71706 * 19 17 15 21 21 F 1.35091 * 119.59099 * 180.02562 * 20 19 17 22 22 C 1.38324 * 120.81654 * 359.97438 * 20 19 17 23 23 F 1.35095 * 120.45198 * 180.02562 * 22 20 19 24 24 H 1.08998 * 109.47845 * 64.89462 * 1 2 3 25 25 H 1.09004 * 109.46486 * 184.89604 * 1 2 3 26 26 H 1.09005 * 109.47333 * 304.88917 * 1 2 3 27 27 H 1.08997 * 109.47183 * 240.00370 * 2 1 3 28 28 H 1.08998 * 109.47784 * 119.99685 * 2 1 3 29 29 H 0.96998 * 120.00099 * 180.02562 * 8 7 5 30 30 H 1.00906 * 110.99740 * 29.73429 * 13 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.5952 1.9851 0.8342 5 6 3.5402 1.4451 0.1418 6 1 4.1548 1.8864 -0.6288 7 6 4.1283 0.8839 1.2555 8 7 5.4376 0.8865 1.3796 9 14 3.0653 0.1201 2.5882 10 1 2.8483 -1.3174 2.2850 11 1 3.7469 0.2515 3.9010 12 1 1.7559 0.8186 2.6381 13 7 1.6664 2.0940 -1.2626 14 6 1.5607 3.4757 -1.1003 15 6 0.3965 4.0486 -0.5883 16 9 -0.6528 3.2721 -0.2401 17 6 0.3330 5.4221 -0.4372 18 9 -0.7875 5.9871 0.0632 19 7 1.3532 6.1893 -0.7813 20 6 2.4708 5.6840 -1.2750 21 9 3.4853 6.5105 -1.6110 22 6 2.6147 4.3196 -1.4506 23 9 3.7601 3.8112 -1.9552 24 1 -0.3635 0.4360 -0.9305 25 1 -0.3632 -1.0240 0.0877 26 1 -0.3634 0.5878 0.8430 27 1 1.8933 -0.5138 -0.8900 28 1 1.8934 -0.5138 0.8900 29 1 5.8513 0.4914 2.1629 30 1 0.8102 1.7065 -1.6299 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000273834476.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:09:09 Heat of formation + Delta-G solvation = -137.199264 kcal Electronic energy + Delta-G solvation = -22383.704713 eV Core-core repulsion = 18293.560914 eV Total energy + Delta-G solvation = -4090.143799 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 278.074 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -50.95962 -50.81248 -50.03103 -49.84235 -41.38229 -38.78656 -35.18652 -33.96956 -31.47592 -31.27615 -29.19717 -25.32011 -25.06480 -24.07840 -22.05822 -20.66055 -19.94460 -19.56553 -18.86928 -18.54311 -18.06127 -17.71242 -17.27720 -17.13276 -16.84304 -16.39748 -16.22516 -16.00872 -15.78151 -15.34777 -15.07208 -14.87036 -14.38434 -14.10582 -13.75136 -13.66914 -13.60511 -13.06554 -12.59193 -12.30411 -11.98455 -11.83573 -11.44328 -11.39531 -10.93699 -10.70465 -10.10600 -9.83655 -8.29683 -6.34728 -0.99948 -0.82335 1.25291 1.27578 1.33462 1.41775 1.58195 2.00121 2.23837 2.27899 2.62051 2.90358 3.02629 3.22661 3.66184 3.81849 4.19086 4.24836 4.29775 4.31629 4.62906 4.85071 4.95272 5.08557 5.14549 5.33808 5.54222 5.54976 5.68885 6.10656 6.46280 6.78142 7.29237 8.86239 Molecular weight = 278.07amu Principal moments of inertia in cm(-1) A = 0.017351 B = 0.008149 C = 0.006560 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1613.361448 B = 3435.218189 C = 4267.153458 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.136 4.136 3 C 0.201 3.799 4 H 0.009 0.991 5 C -0.516 4.516 6 H 0.054 0.946 7 C 0.018 3.982 8 N -0.941 5.941 9 Si 0.935 3.065 10 H -0.260 1.260 11 H -0.302 1.302 12 H -0.246 1.246 13 N -0.626 5.626 14 C 0.153 3.847 15 C 0.015 3.985 16 F -0.098 7.098 17 C 0.327 3.673 18 F -0.082 7.082 19 N -0.508 5.508 20 C 0.321 3.679 21 F -0.084 7.084 22 C 0.067 3.933 23 F -0.100 7.100 24 H 0.070 0.930 25 H 0.074 0.926 26 H 0.049 0.951 27 H 0.075 0.925 28 H 0.048 0.952 29 H 0.266 0.734 30 H 0.370 0.630 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.333 4.663 -4.221 14.743 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.174 4.174 3 C 0.096 3.904 4 H 0.026 0.974 5 C -0.554 4.554 6 H 0.072 0.928 7 C -0.180 4.180 8 N -0.580 5.580 9 Si 0.762 3.238 10 H -0.185 1.185 11 H -0.230 1.230 12 H -0.170 1.170 13 N -0.258 5.258 14 C 0.045 3.955 15 C -0.012 4.012 16 F -0.077 7.077 17 C 0.171 3.829 18 F -0.061 7.061 19 N -0.228 5.228 20 C 0.166 3.834 21 F -0.063 7.063 22 C 0.042 3.958 23 F -0.078 7.078 24 H 0.089 0.911 25 H 0.093 0.907 26 H 0.068 0.932 27 H 0.094 0.906 28 H 0.066 0.934 29 H 0.075 0.925 30 H 0.196 0.804 Dipole moment (debyes) X Y Z Total from point charges -12.623 5.442 -4.258 14.391 hybrid contribution -0.337 -0.992 1.052 1.485 sum -12.961 4.450 -3.206 14.073 Atomic orbital electron populations 1.21904 0.94043 1.03015 1.02157 1.22055 0.96528 0.96732 1.02105 1.19689 0.95035 0.91749 0.83929 0.97353 1.21298 0.90831 1.37735 1.05555 0.92813 1.25713 0.95814 0.96411 1.00104 1.70023 1.11063 1.46747 1.30216 0.86072 0.79720 0.80110 0.77937 1.18538 1.22982 1.17014 1.57665 1.39967 0.97278 1.30925 1.18887 0.89872 0.93032 0.93712 1.18699 0.88505 0.87808 1.06152 1.91590 1.53078 1.73520 1.89465 1.17096 0.83624 0.85282 0.96906 1.91727 1.45219 1.85532 1.83581 1.66301 0.99971 1.40362 1.16200 1.17069 0.84710 0.83621 0.97955 1.91714 1.54261 1.71547 1.88805 1.18069 0.85409 0.89356 1.02954 1.91616 1.45453 1.87118 1.83620 0.91101 0.90708 0.93162 0.90595 0.93354 0.92501 0.80358 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.06 9.67 71.98 0.70 -3.37 16 2 C -0.14 -4.90 5.00 30.59 0.15 -4.75 16 3 C 0.20 8.35 1.58 44.17 0.07 8.42 16 4 H 0.01 0.38 6.74 -2.39 -0.02 0.36 16 5 C -0.52 -27.42 9.28 25.60 0.24 -27.18 16 6 H 0.05 3.23 6.80 -2.91 -0.02 3.21 16 7 C 0.02 0.99 5.45 84.65 0.46 1.45 16 8 N -0.94 -56.85 13.96 21.45 0.30 -56.55 16 9 Si 0.93 42.00 24.41 68.60 1.67 43.67 16 10 H -0.26 -10.95 6.83 99.48 0.68 -10.27 16 11 H -0.30 -13.89 7.11 99.48 0.71 -13.18 16 12 H -0.25 -10.13 6.53 99.48 0.65 -9.48 16 13 N -0.63 -22.08 6.10 -320.83 -1.96 -24.04 16 14 C 0.15 5.10 5.07 38.52 0.20 5.29 16 15 C 0.02 0.43 7.14 22.59 0.16 0.59 16 16 F -0.10 -2.59 16.84 44.97 0.76 -1.84 16 17 C 0.33 9.10 8.41 84.66 0.71 9.82 16 18 F -0.08 -2.09 17.20 44.97 0.77 -1.31 16 19 N -0.51 -15.29 10.38 -198.06 -2.06 -17.35 16 20 C 0.32 10.15 8.41 84.66 0.71 10.86 16 21 F -0.08 -2.61 17.20 44.97 0.77 -1.84 16 22 C 0.07 2.36 7.36 22.59 0.17 2.52 16 23 F -0.10 -4.05 15.82 44.97 0.71 -3.34 16 24 H 0.07 1.56 6.63 -2.39 -0.02 1.55 16 25 H 0.07 1.67 8.14 -2.39 -0.02 1.65 16 26 H 0.05 1.35 8.14 -2.38 -0.02 1.33 16 27 H 0.08 2.70 8.14 -2.39 -0.02 2.68 16 28 H 0.05 1.89 3.21 -2.39 -0.01 1.89 16 29 H 0.27 15.14 8.31 -92.71 -0.77 14.37 16 30 H 0.37 10.49 6.32 -89.69 -0.57 9.92 16 Total: -1.00 -60.03 272.17 5.12 -54.91 By element: Atomic # 1 Polarization: 3.45 SS G_CDS: 0.58 Total: 4.03 kcal Atomic # 6 Polarization: 0.09 SS G_CDS: 3.56 Total: 3.65 kcal Atomic # 7 Polarization: -94.22 SS G_CDS: -3.71 Total: -97.94 kcal Atomic # 9 Polarization: -11.34 SS G_CDS: 3.02 Total: -8.33 kcal Atomic # 14 Polarization: 42.00 SS G_CDS: 1.67 Total: 43.67 kcal Total: -60.03 5.12 -54.91 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273834476.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -82.289 kcal (2) G-P(sol) polarization free energy of solvation -60.031 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -142.320 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.121 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.910 kcal (6) G-S(sol) free energy of system = (1) + (5) -137.199 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds