Wall clock time and date at job start Tue Mar 31 2020 01:14:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17398 * 1 3 3 C 1.47204 * 179.97438 * 2 1 4 4 N 1.46504 * 109.46527 * 151.24240 * 3 2 1 5 5 C 1.36893 * 119.99778 * 96.57156 * 4 3 2 6 6 H 1.08003 * 119.99781 * 159.46995 * 5 4 3 7 7 C 1.39010 * 120.00150 * 339.47739 * 5 4 3 8 8 N 1.31395 * 119.99659 * 342.96106 * 7 5 4 9 9 Si 1.86791 * 120.00122 * 162.96301 * 7 5 4 10 10 H 1.48501 * 109.47334 * 0.02562 * 9 7 5 11 11 H 1.48502 * 109.47156 * 119.99616 * 9 7 5 12 12 H 1.48500 * 109.47470 * 239.99570 * 9 7 5 13 13 C 1.34772 * 120.00352 * 276.56808 * 4 3 2 14 14 O 1.21729 * 120.00201 * 186.28843 * 13 4 3 15 15 C 1.46570 * 119.99855 * 6.28647 * 13 4 3 16 16 C 1.36776 * 126.17792 * 182.21247 * 15 13 4 17 17 N 1.30940 * 113.92025 * 180.02562 * 16 15 13 18 18 C 1.29373 * 117.46997 * 359.97438 * 17 16 15 19 19 C 1.50692 * 124.70615 * 179.97438 * 18 17 16 20 20 C 1.53002 * 109.47368 * 90.02429 * 19 18 17 21 21 C 1.52997 * 109.47341 * 179.97438 * 20 19 18 22 22 S 1.70922 * 110.59305 * 0.02562 * 18 17 16 23 23 H 4.40639 * 5.51492 * 180.02562 * 4 1 2 24 24 H 1.08999 * 109.47043 * 31.24988 * 3 2 1 25 25 H 1.08996 * 109.46993 * 271.24011 * 3 2 1 26 26 H 0.97003 * 119.99806 * 180.02562 * 8 7 5 27 27 H 1.08007 * 123.04155 * 0.26903 * 16 15 13 28 28 H 1.08998 * 109.47394 * 210.02207 * 19 18 17 29 29 H 1.08998 * 109.47122 * 330.02590 * 19 18 17 30 30 H 1.08999 * 109.47203 * 300.00252 * 20 19 18 31 31 H 1.09006 * 109.46669 * 59.99758 * 20 19 18 32 32 H 1.09005 * 109.46987 * 179.97438 * 21 20 19 33 33 H 1.08998 * 109.47431 * 299.99784 * 21 20 19 34 34 H 1.08998 * 109.47112 * 60.00184 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1337 1.2118 -0.6646 5 6 3.4892 2.3047 0.0792 6 1 4.1421 3.0551 -0.3416 7 6 3.0100 2.4485 1.3762 8 7 1.9756 1.7439 1.7763 9 14 3.8366 3.6434 2.5501 10 1 4.9702 4.3104 1.8607 11 1 2.8536 4.6666 2.9885 12 1 4.3427 2.9039 3.7343 13 6 3.2324 1.2501 -2.0081 14 8 3.7436 2.2107 -2.5538 15 6 2.7242 0.1350 -2.8123 16 6 2.7965 0.0225 -4.1735 17 7 2.2637 -1.0770 -4.6444 18 6 1.7478 -1.9026 -3.7923 19 6 1.0939 -3.2113 -4.1536 20 6 2.1445 -4.3236 -4.1535 21 6 1.4805 -5.6524 -4.5197 22 16 1.9095 -1.3025 -2.2001 23 1 -1.0502 -0.0002 0.0003 24 1 3.0097 -0.8777 -0.5331 25 1 3.0093 -0.0214 1.0274 26 1 1.6410 1.8445 2.6812 27 1 3.2552 0.7710 -4.8027 28 1 0.3186 -3.4439 -3.4236 29 1 0.6477 -3.1331 -5.1450 30 1 2.9198 -4.0911 -4.8835 31 1 2.5907 -4.4018 -3.1620 32 1 2.2291 -6.4447 -4.5201 33 1 0.7054 -5.8848 -3.7893 34 1 1.0340 -5.5745 -5.5110 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000281511739.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:14:42 Heat of formation + Delta-G solvation = 70.696781 kcal Electronic energy + Delta-G solvation = -19045.191087 eV Core-core repulsion = 16072.132253 eV Total energy + Delta-G solvation = -2973.058834 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 278.083 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -39.32426 -38.47682 -35.37131 -34.99210 -32.46565 -31.43324 -30.22834 -27.81227 -26.71203 -25.05771 -23.72072 -21.67033 -21.02464 -18.32811 -18.03520 -17.94920 -16.80184 -15.88804 -15.25759 -14.97060 -14.59803 -14.51283 -14.00500 -13.86267 -13.79015 -13.03382 -12.92492 -12.53186 -12.44964 -11.95322 -11.76706 -11.64759 -11.28920 -11.17377 -10.91639 -10.78381 -10.68362 -10.46274 -9.77471 -9.54910 -9.27599 -9.02346 -8.74554 -8.48435 -8.23822 -7.95400 -6.55272 -4.05080 0.86102 1.82846 2.23367 3.00080 3.14996 3.16234 3.21969 3.58477 3.88640 4.03078 4.14055 4.43732 4.77436 4.89022 4.93138 4.98132 5.13693 5.23750 5.49160 5.61268 5.70171 5.71696 5.73064 5.93987 5.98110 6.03806 6.10957 6.20724 6.50989 6.70342 6.83730 7.34444 7.81840 8.18435 8.23638 8.64289 8.90193 9.07917 9.66721 10.44002 Molecular weight = 278.08amu Principal moments of inertia in cm(-1) A = 0.029686 B = 0.005267 C = 0.004762 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 942.968946 B = 5315.006015 C = 5878.010057 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C -0.120 4.120 3 C 0.221 3.779 4 N -0.423 5.423 5 C -0.304 4.304 6 H 0.111 0.889 7 C 0.031 3.969 8 N -0.854 5.854 9 Si 0.930 3.070 10 H -0.265 1.265 11 H -0.280 1.280 12 H -0.277 1.277 13 C 0.512 3.488 14 O -0.572 6.572 15 C -0.251 4.251 16 C 0.073 3.927 17 N -0.478 5.478 18 C -0.021 4.021 19 C -0.038 4.038 20 C -0.118 4.118 21 C -0.150 4.150 22 S 0.200 5.800 23 H 0.203 0.797 24 H 0.067 0.933 25 H 0.124 0.876 26 H 0.273 0.727 27 H 0.178 0.822 28 H 0.080 0.920 29 H 0.085 0.915 30 H 0.067 0.933 31 H 0.064 0.936 32 H 0.055 0.945 33 H 0.055 0.945 34 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.727 -12.191 -3.399 12.946 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.253 4.253 2 C -0.124 4.124 3 C 0.096 3.904 4 N -0.139 5.139 5 C -0.432 4.432 6 H 0.129 0.871 7 C -0.175 4.175 8 N -0.490 5.490 9 Si 0.756 3.244 10 H -0.189 1.189 11 H -0.205 1.205 12 H -0.203 1.203 13 C 0.301 3.699 14 O -0.457 6.457 15 C -0.375 4.375 16 C -0.085 4.085 17 N -0.192 5.192 18 C -0.294 4.294 19 C -0.078 4.078 20 C -0.158 4.158 21 C -0.208 4.208 22 S 0.460 5.540 23 H 0.220 0.780 24 H 0.084 0.916 25 H 0.142 0.858 26 H 0.084 0.916 27 H 0.195 0.805 28 H 0.098 0.902 29 H 0.104 0.896 30 H 0.086 0.914 31 H 0.083 0.917 32 H 0.074 0.926 33 H 0.074 0.926 34 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -2.884 -12.291 -3.070 12.992 hybrid contribution 0.269 1.301 0.180 1.341 sum -2.615 -10.990 -2.890 11.660 Atomic orbital electron populations 1.24272 0.95288 1.02239 1.03494 1.22642 0.94086 0.98240 0.97472 1.18540 0.85195 0.86099 1.00585 1.43629 1.54228 1.12366 1.03670 1.19855 1.27350 1.01104 0.94902 0.87104 1.25460 0.95011 0.98476 0.98538 1.70025 1.19622 1.40369 1.19005 0.85792 0.79459 0.79646 0.79505 1.18895 1.20547 1.20312 1.16628 0.85785 0.85758 0.81768 1.90670 1.49301 1.35002 1.70769 1.26483 1.11056 1.01149 0.98858 1.22151 0.99801 0.95176 0.91361 1.66063 1.11910 1.03207 1.38068 1.27662 1.03995 1.01115 0.96666 1.20178 0.97052 0.87629 1.02971 1.21528 0.98107 0.93718 1.02403 1.21763 1.00722 0.96736 1.01554 1.84727 1.50759 1.12069 1.06454 0.78009 0.91581 0.85843 0.91602 0.80483 0.90172 0.89633 0.91395 0.91710 0.92583 0.92583 0.92608 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.23 -4.55 19.04 29.55 0.56 -3.99 16 2 C -0.12 -2.56 8.44 -37.12 -0.31 -2.88 16 3 C 0.22 4.79 4.73 -6.82 -0.03 4.76 16 4 N -0.42 -10.64 2.60 -119.46 -0.31 -10.95 16 5 C -0.30 -8.09 9.32 -15.01 -0.14 -8.23 16 6 H 0.11 3.09 7.36 -52.48 -0.39 2.70 16 7 C 0.03 0.77 4.95 -17.45 -0.09 0.68 16 8 N -0.85 -21.11 9.35 55.50 0.52 -20.59 16 9 Si 0.93 19.45 29.59 -169.99 -5.03 14.42 16 10 H -0.26 -5.58 7.11 56.52 0.40 -5.18 16 11 H -0.28 -5.90 7.11 56.52 0.40 -5.50 16 12 H -0.28 -5.63 7.11 56.52 0.40 -5.23 16 13 C 0.51 13.00 7.52 -12.90 -0.10 12.90 16 14 O -0.57 -16.17 16.54 5.16 0.09 -16.08 16 15 C -0.25 -5.38 6.24 -36.75 -0.23 -5.61 16 16 C 0.07 1.46 11.17 -18.46 -0.21 1.25 16 17 N -0.48 -8.86 10.50 -11.25 -0.12 -8.97 16 18 C -0.02 -0.34 6.63 -13.32 -0.09 -0.43 16 19 C -0.04 -0.45 5.79 -27.89 -0.16 -0.62 16 20 C -0.12 -1.25 5.92 -26.73 -0.16 -1.41 16 21 C -0.15 -1.23 9.91 37.16 0.37 -0.87 16 22 S 0.20 3.48 15.98 -107.50 -1.72 1.76 16 23 H 0.20 3.17 7.80 -54.08 -0.42 2.75 16 24 H 0.07 1.28 5.01 -26.50 -0.13 1.14 16 25 H 0.12 2.75 6.47 -51.93 -0.34 2.42 16 26 H 0.27 6.40 8.31 -40.82 -0.34 6.06 16 27 H 0.18 3.41 8.06 -52.48 -0.42 2.99 16 28 H 0.08 0.84 8.14 -51.93 -0.42 0.41 16 29 H 0.09 0.99 8.14 -51.93 -0.42 0.57 16 30 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 31 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 32 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 33 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 34 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 LS Contribution 305.53 15.07 4.60 4.60 Total: -1.00 -30.15 305.53 -6.34 -36.49 By element: Atomic # 1 Polarization: 7.55 SS G_CDS: -3.79 Total: 3.76 kcal Atomic # 6 Polarization: -3.85 SS G_CDS: -0.58 Total: -4.43 kcal Atomic # 7 Polarization: -40.61 SS G_CDS: 0.09 Total: -40.52 kcal Atomic # 8 Polarization: -16.17 SS G_CDS: 0.09 Total: -16.08 kcal Atomic # 14 Polarization: 19.45 SS G_CDS: -5.03 Total: 14.42 kcal Atomic # 16 Polarization: 3.48 SS G_CDS: -1.72 Total: 1.76 kcal Total LS contribution 4.60 Total: 4.60 kcal Total: -30.15 -6.34 -36.49 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000281511739.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.188 kcal (2) G-P(sol) polarization free energy of solvation -30.150 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 77.038 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.341 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.492 kcal (6) G-S(sol) free energy of system = (1) + (5) 70.697 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds