Wall clock time and date at job start Tue Mar 31 2020 01:14:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17398 * 1 3 3 C 1.47204 * 179.97438 * 2 1 4 4 N 1.46504 * 109.46527 * 151.24240 * 3 2 1 5 5 C 1.36893 * 119.99778 * 96.57156 * 4 3 2 6 6 H 1.08003 * 119.99781 * 159.46995 * 5 4 3 7 7 C 1.39010 * 120.00150 * 339.47739 * 5 4 3 8 8 N 1.31395 * 119.99659 * 342.96106 * 7 5 4 9 9 Si 1.86791 * 120.00122 * 162.96301 * 7 5 4 10 10 H 1.48501 * 109.47334 * 0.02562 * 9 7 5 11 11 H 1.48502 * 109.47156 * 119.99616 * 9 7 5 12 12 H 1.48500 * 109.47470 * 239.99570 * 9 7 5 13 13 C 1.34772 * 120.00352 * 276.56808 * 4 3 2 14 14 O 1.21729 * 120.00201 * 186.28843 * 13 4 3 15 15 C 1.46570 * 119.99855 * 6.28647 * 13 4 3 16 16 C 1.36776 * 126.17792 * 182.21247 * 15 13 4 17 17 N 1.30940 * 113.92025 * 180.02562 * 16 15 13 18 18 C 1.29373 * 117.46997 * 359.97438 * 17 16 15 19 19 C 1.50692 * 124.70615 * 179.97438 * 18 17 16 20 20 C 1.53002 * 109.47368 * 90.02429 * 19 18 17 21 21 C 1.52997 * 109.47341 * 179.97438 * 20 19 18 22 22 S 1.70922 * 110.59305 * 0.02562 * 18 17 16 23 23 H 4.40639 * 5.51492 * 180.02562 * 4 1 2 24 24 H 1.08999 * 109.47043 * 31.24988 * 3 2 1 25 25 H 1.08996 * 109.46993 * 271.24011 * 3 2 1 26 26 H 0.97003 * 119.99806 * 180.02562 * 8 7 5 27 27 H 1.08007 * 123.04155 * 0.26903 * 16 15 13 28 28 H 1.08998 * 109.47394 * 210.02207 * 19 18 17 29 29 H 1.08998 * 109.47122 * 330.02590 * 19 18 17 30 30 H 1.08999 * 109.47203 * 300.00252 * 20 19 18 31 31 H 1.09006 * 109.46669 * 59.99758 * 20 19 18 32 32 H 1.09005 * 109.46987 * 179.97438 * 21 20 19 33 33 H 1.08998 * 109.47431 * 299.99784 * 21 20 19 34 34 H 1.08998 * 109.47112 * 60.00184 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1337 1.2118 -0.6646 5 6 3.4892 2.3047 0.0792 6 1 4.1421 3.0551 -0.3416 7 6 3.0100 2.4485 1.3762 8 7 1.9756 1.7439 1.7763 9 14 3.8366 3.6434 2.5501 10 1 4.9702 4.3104 1.8607 11 1 2.8536 4.6666 2.9885 12 1 4.3427 2.9039 3.7343 13 6 3.2324 1.2501 -2.0081 14 8 3.7436 2.2107 -2.5538 15 6 2.7242 0.1350 -2.8123 16 6 2.7965 0.0225 -4.1735 17 7 2.2637 -1.0770 -4.6444 18 6 1.7478 -1.9026 -3.7923 19 6 1.0939 -3.2113 -4.1536 20 6 2.1445 -4.3236 -4.1535 21 6 1.4805 -5.6524 -4.5197 22 16 1.9095 -1.3025 -2.2001 23 1 -1.0502 -0.0002 0.0003 24 1 3.0097 -0.8777 -0.5331 25 1 3.0093 -0.0214 1.0274 26 1 1.6410 1.8445 2.6812 27 1 3.2552 0.7710 -4.8027 28 1 0.3186 -3.4439 -3.4236 29 1 0.6477 -3.1331 -5.1450 30 1 2.9198 -4.0911 -4.8835 31 1 2.5907 -4.4018 -3.1620 32 1 2.2291 -6.4447 -4.5201 33 1 0.7054 -5.8848 -3.7893 34 1 1.0340 -5.5745 -5.5110 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000281511739.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:14:40 Heat of formation + Delta-G solvation = 52.546048 kcal Electronic energy + Delta-G solvation = -19045.978162 eV Core-core repulsion = 16072.132253 eV Total energy + Delta-G solvation = -2973.845908 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 278.083 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -40.97637 -40.17131 -37.23159 -35.99198 -34.25607 -33.19050 -31.58741 -29.13553 -28.40783 -26.76639 -25.11097 -22.93750 -22.34182 -19.94769 -19.75905 -19.48902 -18.52874 -17.52796 -16.97393 -16.33274 -16.22787 -15.83078 -15.49513 -15.35678 -15.03390 -14.77642 -14.40824 -14.03976 -13.78455 -13.57235 -12.92205 -12.85862 -12.67274 -12.57166 -12.40963 -12.13785 -12.08284 -11.60014 -11.43742 -11.22089 -11.00558 -10.76448 -10.38711 -10.09295 -10.02515 -9.53215 -8.42861 -6.04833 -0.64588 0.33154 0.75726 1.33688 1.42616 1.55581 1.57291 1.93201 2.23386 2.30509 2.38222 2.98153 2.99128 3.21233 3.65916 3.96950 3.99992 4.14113 4.16465 4.36320 4.42385 4.62304 4.73442 4.77807 4.83122 4.99489 5.13670 5.27808 5.32168 5.32934 5.36970 5.48013 5.90908 6.28996 6.72333 6.96843 7.06093 7.18626 7.75963 8.55105 Molecular weight = 278.08amu Principal moments of inertia in cm(-1) A = 0.029686 B = 0.005267 C = 0.004762 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 942.968946 B = 5315.006015 C = 5878.010057 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.162 4.162 3 C 0.224 3.776 4 N -0.433 5.433 5 C -0.350 4.350 6 H 0.081 0.919 7 C 0.008 3.992 8 N -0.862 5.862 9 Si 0.993 3.007 10 H -0.275 1.275 11 H -0.276 1.276 12 H -0.260 1.260 13 C 0.501 3.499 14 O -0.621 6.621 15 C -0.300 4.300 16 C 0.086 3.914 17 N -0.496 5.496 18 C 0.005 3.995 19 C -0.041 4.041 20 C -0.116 4.116 21 C -0.146 4.146 22 S 0.245 5.755 23 H 0.239 0.761 24 H 0.087 0.913 25 H 0.112 0.888 26 H 0.279 0.721 27 H 0.175 0.825 28 H 0.106 0.894 29 H 0.097 0.903 30 H 0.055 0.945 31 H 0.065 0.935 32 H 0.063 0.937 33 H 0.067 0.933 34 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.570 -14.610 -2.965 15.593 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C -0.166 4.166 3 C 0.100 3.900 4 N -0.148 5.148 5 C -0.478 4.478 6 H 0.099 0.901 7 C -0.197 4.197 8 N -0.497 5.497 9 Si 0.816 3.184 10 H -0.199 1.199 11 H -0.202 1.202 12 H -0.185 1.185 13 C 0.291 3.709 14 O -0.510 6.510 15 C -0.424 4.424 16 C -0.073 4.073 17 N -0.211 5.211 18 C -0.268 4.268 19 C -0.082 4.082 20 C -0.156 4.156 21 C -0.203 4.203 22 S 0.506 5.494 23 H 0.256 0.744 24 H 0.104 0.896 25 H 0.130 0.870 26 H 0.090 0.910 27 H 0.192 0.808 28 H 0.125 0.875 29 H 0.115 0.885 30 H 0.074 0.926 31 H 0.083 0.917 32 H 0.082 0.918 33 H 0.086 0.914 34 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -4.752 -14.753 -2.596 15.715 hybrid contribution 0.733 1.889 -0.071 2.027 sum -4.019 -12.864 -2.667 13.739 Atomic orbital electron populations 1.25155 0.96160 1.00146 1.01486 1.22732 0.94394 1.00125 0.99331 1.18537 0.86074 0.85499 0.99882 1.43756 1.54305 1.13035 1.03731 1.19730 1.29343 1.02290 0.96443 0.90089 1.26118 0.95064 0.99752 0.98774 1.70092 1.19576 1.40620 1.19458 0.84887 0.78146 0.77724 0.77636 1.19919 1.20167 1.18471 1.17154 0.85178 0.86388 0.82153 1.90599 1.51332 1.37252 1.71786 1.26118 1.14314 1.02800 0.99182 1.22267 0.98516 0.95472 0.91010 1.66199 1.13339 1.03237 1.38294 1.28565 1.00787 1.01476 0.95995 1.20511 0.97817 0.85467 1.04405 1.21525 0.97488 0.94371 1.02198 1.21732 1.01106 0.95282 1.02198 1.84403 1.49398 1.09217 1.06363 0.74430 0.89617 0.87044 0.91016 0.80788 0.87547 0.88466 0.92647 0.91659 0.91808 0.91400 0.92039 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -7.69 19.04 74.32 1.42 -6.27 16 2 C -0.16 -6.74 8.44 31.13 0.26 -6.48 16 3 C 0.22 9.84 4.73 84.57 0.40 10.24 16 4 N -0.43 -22.71 2.60 -650.05 -1.69 -24.40 16 5 C -0.35 -19.58 9.32 84.09 0.78 -18.79 16 6 H 0.08 4.87 7.36 -2.91 -0.02 4.85 16 7 C 0.01 0.41 4.95 84.94 0.42 0.83 16 8 N -0.86 -42.50 9.35 21.68 0.20 -42.30 16 9 Si 0.99 40.35 29.59 68.60 2.03 42.38 16 10 H -0.27 -11.49 7.11 99.48 0.71 -10.79 16 11 H -0.28 -11.03 7.11 99.48 0.71 -10.32 16 12 H -0.26 -9.80 7.11 99.48 0.71 -9.10 16 13 C 0.50 26.73 7.52 86.42 0.65 27.38 16 14 O -0.62 -37.45 16.54 -4.44 -0.07 -37.52 16 15 C -0.30 -13.09 6.24 24.10 0.15 -12.94 16 16 C 0.09 3.49 11.17 84.48 0.94 4.43 16 17 N -0.50 -17.73 10.50 -189.52 -1.99 -19.72 16 18 C 0.00 0.15 6.63 88.47 0.59 0.74 16 19 C -0.04 -0.84 5.79 29.85 0.17 -0.67 16 20 C -0.12 -2.08 5.92 30.59 0.18 -1.90 16 21 C -0.15 -1.84 9.91 71.98 0.71 -1.13 16 22 S 0.25 8.12 15.98 -56.49 -0.90 7.22 16 23 H 0.24 6.51 7.80 -4.41 -0.03 6.47 16 24 H 0.09 3.31 5.01 -18.56 -0.09 3.21 16 25 H 0.11 5.07 6.47 -2.39 -0.02 5.06 16 26 H 0.28 12.82 8.31 -92.71 -0.77 12.05 16 27 H 0.18 6.98 8.06 -2.91 -0.02 6.96 16 28 H 0.11 1.69 8.14 -2.39 -0.02 1.67 16 29 H 0.10 1.86 8.14 -2.39 -0.02 1.84 16 30 H 0.05 1.14 8.14 -2.39 -0.02 1.12 16 31 H 0.06 1.16 8.14 -2.38 -0.02 1.15 16 32 H 0.06 0.73 8.14 -2.38 -0.02 0.71 16 33 H 0.07 0.72 8.14 -2.39 -0.02 0.70 16 34 H 0.06 0.72 8.14 -2.39 -0.02 0.70 16 Total: -1.00 -67.89 305.53 5.29 -62.61 By element: Atomic # 1 Polarization: 15.26 SS G_CDS: 1.03 Total: 16.29 kcal Atomic # 6 Polarization: -11.24 SS G_CDS: 6.68 Total: -4.56 kcal Atomic # 7 Polarization: -82.94 SS G_CDS: -3.47 Total: -86.41 kcal Atomic # 8 Polarization: -37.45 SS G_CDS: -0.07 Total: -37.52 kcal Atomic # 14 Polarization: 40.35 SS G_CDS: 2.03 Total: 42.38 kcal Atomic # 16 Polarization: 8.12 SS G_CDS: -0.90 Total: 7.22 kcal Total: -67.89 5.29 -62.61 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000281511739.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.152 kcal (2) G-P(sol) polarization free energy of solvation -67.892 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.259 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.287 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.606 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.546 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds