Wall clock time and date at job start Tue Mar 31 2020 01:11:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17393 * 1 3 3 C 1.47199 * 179.97438 * 2 1 4 4 N 1.46497 * 109.47451 * 296.86880 * 3 2 1 5 5 C 1.37099 * 119.99960 * 263.73422 * 4 3 2 6 6 H 1.08003 * 119.99958 * 142.46132 * 5 4 3 7 7 C 1.38949 * 119.99968 * 322.46387 * 5 4 3 8 8 N 1.31414 * 120.00131 * 157.51239 * 7 5 4 9 9 Si 1.86800 * 120.00171 * 337.51066 * 7 5 4 10 10 H 1.48501 * 109.47076 * 95.70602 * 9 7 5 11 11 H 1.48492 * 109.47204 * 215.70648 * 9 7 5 12 12 H 1.48502 * 109.47266 * 335.70896 * 9 7 5 13 13 C 1.34770 * 120.00037 * 83.73651 * 4 3 2 14 14 O 1.21300 * 120.00069 * 180.02562 * 13 4 3 15 15 C 1.50696 * 120.00091 * 359.97438 * 13 4 3 16 16 C 1.50703 * 109.47329 * 180.02562 * 15 13 4 17 17 C 1.33644 * 122.74799 * 124.73244 * 16 15 13 18 18 S 1.76202 * 107.92177 * 179.97438 * 17 16 15 19 19 C 1.70979 * 90.28415 * 0.27727 * 18 17 16 20 20 C 1.50698 * 124.91724 * 179.84245 * 19 18 17 21 21 C 1.53002 * 109.46678 * 269.99722 * 20 19 18 22 22 N 1.29025 * 110.16674 * 359.83695 * 19 18 17 23 23 H 4.40637 * 5.51481 * 179.97438 * 4 1 2 24 24 H 1.08999 * 109.47017 * 176.86574 * 3 2 1 25 25 H 1.09004 * 109.47077 * 56.86878 * 3 2 1 26 26 H 0.96996 * 120.00185 * 179.97438 * 8 7 5 27 27 H 1.09001 * 109.47191 * 60.00623 * 15 13 4 28 28 H 1.08998 * 109.47412 * 300.00437 * 15 13 4 29 29 H 1.07995 * 126.03949 * 0.04026 * 17 16 15 30 30 H 1.08997 * 109.47352 * 29.99846 * 20 19 18 31 31 H 1.09002 * 109.47100 * 150.00096 * 20 19 18 32 32 H 1.09005 * 109.46659 * 179.97438 * 21 20 19 33 33 H 1.08999 * 109.47223 * 299.99596 * 21 20 19 34 34 H 1.08993 * 109.47138 * 60.00524 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1739 0.0000 0.0000 3 6 2.6459 0.0007 0.0000 4 7 3.1346 -0.6233 1.2321 5 6 3.4850 0.1571 2.3034 6 1 3.2651 -0.1742 3.3076 7 6 4.1228 1.3742 2.0973 8 7 4.0695 2.3085 3.0199 9 14 5.0561 1.6824 0.5088 10 1 4.1781 2.4004 -0.4498 11 1 6.2577 2.5072 0.7927 12 1 5.4742 0.3846 -0.0795 13 6 3.2398 -1.9645 1.3123 14 8 3.6440 -2.4812 2.3326 15 6 2.8542 -2.8224 0.1349 16 6 3.0630 -4.2741 0.4812 17 6 2.0924 -5.1876 0.3834 18 16 2.7582 -6.7415 0.8800 19 6 4.2732 -6.0070 1.1776 20 6 5.4980 -6.7282 1.6782 21 6 5.5149 -6.7032 3.2079 22 7 4.2160 -4.7457 0.9115 23 1 -1.0499 0.0001 0.0003 24 1 3.0088 1.0269 -0.0562 25 1 3.0095 -0.5609 -0.8606 26 1 4.5151 3.1580 2.8762 27 1 3.4730 -2.5607 -0.7235 28 1 1.8052 -2.6546 -0.1089 29 1 1.0793 -5.0056 0.0566 30 1 5.4782 -7.7615 1.3318 31 1 6.3918 -6.2342 1.2969 32 1 6.4007 -7.2253 3.5700 33 1 5.5348 -5.6699 3.5542 34 1 4.6213 -7.1972 3.5892 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000281557066.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:11:06 Heat of formation + Delta-G solvation = 77.558736 kcal Electronic energy + Delta-G solvation = -18958.498803 eV Core-core repulsion = 15985.737526 eV Total energy + Delta-G solvation = -2972.761277 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 278.083 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -39.92357 -38.48399 -35.30104 -34.13415 -32.70028 -31.60720 -30.81342 -28.05875 -26.71862 -25.35593 -24.49020 -21.80391 -19.67382 -19.11552 -18.53741 -17.19550 -16.72536 -16.19337 -15.65649 -15.23412 -14.54480 -14.46198 -14.34906 -13.61412 -13.41411 -13.15860 -12.94432 -12.79257 -12.60901 -12.23475 -11.93016 -11.69340 -11.50605 -11.20520 -11.06758 -10.90643 -10.76595 -10.25483 -9.78026 -9.58205 -9.31261 -9.17219 -9.11259 -8.67505 -8.34348 -7.85221 -6.39230 -3.96632 0.92384 1.55585 1.89886 2.99877 3.05390 3.16918 3.18966 3.25525 3.32963 3.74138 4.14440 4.21600 4.56720 4.80233 4.93663 5.07142 5.14959 5.25339 5.28623 5.45063 5.56127 5.65917 5.70528 5.78657 5.83219 5.93587 6.00004 6.10872 6.26354 6.37593 6.40012 7.52845 8.06176 8.08548 8.27648 8.49383 8.96263 9.29583 9.74979 10.73040 Molecular weight = 278.08amu Principal moments of inertia in cm(-1) A = 0.020873 B = 0.005448 C = 0.004729 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1341.097449 B = 5137.958195 C = 5919.384083 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.175 4.175 3 C 0.191 3.809 4 N -0.467 5.467 5 C -0.313 4.313 6 H 0.105 0.895 7 C 0.061 3.939 8 N -0.861 5.861 9 Si 0.864 3.136 10 H -0.273 1.273 11 H -0.283 1.283 12 H -0.259 1.259 13 C 0.481 3.519 14 O -0.537 6.537 15 C -0.072 4.072 16 C 0.106 3.894 17 C -0.262 4.262 18 S 0.082 5.918 19 C 0.056 3.944 20 C -0.044 4.044 21 C -0.148 4.148 22 N -0.436 5.436 23 H 0.213 0.787 24 H 0.098 0.902 25 H 0.086 0.914 26 H 0.274 0.726 27 H 0.099 0.901 28 H 0.098 0.902 29 H 0.174 0.826 30 H 0.081 0.919 31 H 0.093 0.907 32 H 0.064 0.936 33 H 0.069 0.931 34 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.632 -14.760 -8.901 17.436 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C -0.177 4.177 3 C 0.068 3.932 4 N -0.190 5.190 5 C -0.440 4.440 6 H 0.123 0.877 7 C -0.145 4.145 8 N -0.497 5.497 9 Si 0.691 3.309 10 H -0.200 1.200 11 H -0.209 1.209 12 H -0.183 1.183 13 C 0.268 3.732 14 O -0.415 6.415 15 C -0.115 4.115 16 C -0.026 4.026 17 C -0.401 4.401 18 S 0.337 5.663 19 C -0.223 4.223 20 C -0.085 4.085 21 C -0.206 4.206 22 N -0.149 5.149 23 H 0.230 0.770 24 H 0.115 0.885 25 H 0.103 0.897 26 H 0.084 0.916 27 H 0.117 0.883 28 H 0.116 0.884 29 H 0.192 0.808 30 H 0.099 0.901 31 H 0.111 0.889 32 H 0.083 0.917 33 H 0.088 0.912 34 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -2.247 -15.540 -8.114 17.674 hybrid contribution -0.050 1.471 -1.023 1.793 sum -2.297 -14.069 -9.137 16.932 Atomic orbital electron populations 1.24729 0.95661 1.02024 1.01321 1.23830 0.94926 0.99414 0.99517 1.18930 0.83928 1.00603 0.89729 1.43654 1.57778 1.04469 1.13102 1.18995 1.37608 0.99860 0.87551 0.87747 1.25344 0.96255 0.95313 0.97582 1.69761 1.40312 1.04352 1.35317 0.87133 0.80713 0.79231 0.83837 1.20043 1.20907 1.18293 1.19901 0.81707 0.82529 0.89056 1.90598 1.47235 1.72008 1.31674 1.20376 1.03216 0.88341 0.99534 1.19712 0.87636 0.96546 0.98684 1.26674 1.04860 0.94798 1.13751 1.83641 1.07797 1.12657 1.62254 1.27065 0.99391 0.92576 1.03307 1.20183 0.92842 0.98527 0.96922 1.21770 1.01845 1.03574 0.93440 1.65993 1.26152 1.10611 1.12147 0.76990 0.88478 0.89660 0.91566 0.88261 0.88419 0.80840 0.90084 0.88872 0.91691 0.91234 0.92603 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.22 -3.59 19.25 29.55 0.57 -3.02 16 2 C -0.18 -3.35 12.90 -37.12 -0.48 -3.83 16 3 C 0.19 3.92 4.27 -6.83 -0.03 3.89 16 4 N -0.47 -11.57 2.15 -117.94 -0.25 -11.82 16 5 C -0.31 -9.04 9.36 -14.93 -0.14 -9.18 16 6 H 0.10 3.41 7.91 -52.48 -0.42 2.99 16 7 C 0.06 1.70 5.26 -17.47 -0.09 1.61 16 8 N -0.86 -25.18 13.96 55.50 0.77 -24.41 16 9 Si 0.86 20.26 25.05 -169.99 -4.26 16.00 16 10 H -0.27 -5.91 6.69 56.52 0.38 -5.53 16 11 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 12 H -0.26 -5.96 7.11 56.52 0.40 -5.56 16 13 C 0.48 11.57 7.53 -10.99 -0.08 11.49 16 14 O -0.54 -15.05 15.31 5.54 0.08 -14.97 16 15 C -0.07 -1.31 4.80 -29.04 -0.14 -1.45 16 16 C 0.11 1.92 5.64 -84.22 -0.47 1.44 16 17 C -0.26 -3.87 11.07 29.12 0.32 -3.55 16 18 S 0.08 1.06 23.18 -107.50 -2.49 -1.43 16 19 C 0.06 0.86 6.64 -13.46 -0.09 0.77 16 20 C -0.04 -0.52 6.52 -27.88 -0.18 -0.70 16 21 C -0.15 -1.73 9.89 37.16 0.37 -1.36 16 22 N -0.44 -8.34 9.68 -8.05 -0.08 -8.42 16 23 H 0.21 2.54 7.80 -54.09 -0.42 2.11 16 24 H 0.10 2.10 3.62 -51.93 -0.19 1.91 16 25 H 0.09 1.43 6.70 -51.93 -0.35 1.08 16 26 H 0.27 7.38 8.31 -40.82 -0.34 7.05 16 27 H 0.10 1.61 7.42 -51.93 -0.39 1.22 16 28 H 0.10 1.53 7.36 -51.93 -0.38 1.15 16 29 H 0.17 2.05 8.06 -52.49 -0.42 1.63 16 30 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 31 H 0.09 1.10 8.14 -51.93 -0.42 0.68 16 32 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 33 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 34 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 LS Contribution 311.26 15.07 4.69 4.69 Total: -1.00 -34.65 311.26 -5.82 -40.47 By element: Atomic # 1 Polarization: 7.60 SS G_CDS: -3.84 Total: 3.76 kcal Atomic # 6 Polarization: -3.43 SS G_CDS: -0.45 Total: -3.88 kcal Atomic # 7 Polarization: -45.09 SS G_CDS: 0.44 Total: -44.64 kcal Atomic # 8 Polarization: -15.05 SS G_CDS: 0.08 Total: -14.97 kcal Atomic # 14 Polarization: 20.26 SS G_CDS: -4.26 Total: 16.00 kcal Atomic # 16 Polarization: 1.06 SS G_CDS: -2.49 Total: -1.43 kcal Total LS contribution 4.69 Total: 4.69 kcal Total: -34.65 -5.82 -40.47 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000281557066.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.029 kcal (2) G-P(sol) polarization free energy of solvation -34.653 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 83.376 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.817 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.470 kcal (6) G-S(sol) free energy of system = (1) + (5) 77.559 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds