Wall clock time and date at job start Tue Mar 31 2020 01:11:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17393 * 1 3 3 C 1.47199 * 179.97438 * 2 1 4 4 N 1.46497 * 109.47451 * 296.86880 * 3 2 1 5 5 C 1.37099 * 119.99960 * 263.73422 * 4 3 2 6 6 H 1.08003 * 119.99958 * 142.46132 * 5 4 3 7 7 C 1.38949 * 119.99968 * 322.46387 * 5 4 3 8 8 N 1.31414 * 120.00131 * 157.51239 * 7 5 4 9 9 Si 1.86800 * 120.00171 * 337.51066 * 7 5 4 10 10 H 1.48501 * 109.47076 * 95.70602 * 9 7 5 11 11 H 1.48492 * 109.47204 * 215.70648 * 9 7 5 12 12 H 1.48502 * 109.47266 * 335.70896 * 9 7 5 13 13 C 1.34770 * 120.00037 * 83.73651 * 4 3 2 14 14 O 1.21300 * 120.00069 * 180.02562 * 13 4 3 15 15 C 1.50696 * 120.00091 * 359.97438 * 13 4 3 16 16 C 1.50703 * 109.47329 * 180.02562 * 15 13 4 17 17 C 1.33644 * 122.74799 * 124.73244 * 16 15 13 18 18 S 1.76202 * 107.92177 * 179.97438 * 17 16 15 19 19 C 1.70979 * 90.28415 * 0.27727 * 18 17 16 20 20 C 1.50698 * 124.91724 * 179.84245 * 19 18 17 21 21 C 1.53002 * 109.46678 * 269.99722 * 20 19 18 22 22 N 1.29025 * 110.16674 * 359.83695 * 19 18 17 23 23 H 4.40637 * 5.51481 * 179.97438 * 4 1 2 24 24 H 1.08999 * 109.47017 * 176.86574 * 3 2 1 25 25 H 1.09004 * 109.47077 * 56.86878 * 3 2 1 26 26 H 0.96996 * 120.00185 * 179.97438 * 8 7 5 27 27 H 1.09001 * 109.47191 * 60.00623 * 15 13 4 28 28 H 1.08998 * 109.47412 * 300.00437 * 15 13 4 29 29 H 1.07995 * 126.03949 * 0.04026 * 17 16 15 30 30 H 1.08997 * 109.47352 * 29.99846 * 20 19 18 31 31 H 1.09002 * 109.47100 * 150.00096 * 20 19 18 32 32 H 1.09005 * 109.46659 * 179.97438 * 21 20 19 33 33 H 1.08999 * 109.47223 * 299.99596 * 21 20 19 34 34 H 1.08993 * 109.47138 * 60.00524 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1739 0.0000 0.0000 3 6 2.6459 0.0007 0.0000 4 7 3.1346 -0.6233 1.2321 5 6 3.4850 0.1571 2.3034 6 1 3.2651 -0.1742 3.3076 7 6 4.1228 1.3742 2.0973 8 7 4.0695 2.3085 3.0199 9 14 5.0561 1.6824 0.5088 10 1 4.1781 2.4004 -0.4498 11 1 6.2577 2.5072 0.7927 12 1 5.4742 0.3846 -0.0795 13 6 3.2398 -1.9645 1.3123 14 8 3.6440 -2.4812 2.3326 15 6 2.8542 -2.8224 0.1349 16 6 3.0630 -4.2741 0.4812 17 6 2.0924 -5.1876 0.3834 18 16 2.7582 -6.7415 0.8800 19 6 4.2732 -6.0070 1.1776 20 6 5.4980 -6.7282 1.6782 21 6 5.5149 -6.7032 3.2079 22 7 4.2160 -4.7457 0.9115 23 1 -1.0499 0.0001 0.0003 24 1 3.0088 1.0269 -0.0562 25 1 3.0095 -0.5609 -0.8606 26 1 4.5151 3.1580 2.8762 27 1 3.4730 -2.5607 -0.7235 28 1 1.8052 -2.6546 -0.1089 29 1 1.0793 -5.0056 0.0566 30 1 5.4782 -7.7615 1.3318 31 1 6.3918 -6.2342 1.2969 32 1 6.4007 -7.2253 3.5700 33 1 5.5348 -5.6699 3.5542 34 1 4.6213 -7.1972 3.5892 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000281557066.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:11:06 Heat of formation + Delta-G solvation = 53.262286 kcal Electronic energy + Delta-G solvation = -18959.552376 eV Core-core repulsion = 15985.737526 eV Total energy + Delta-G solvation = -2973.814850 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 278.083 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.30146 -40.12776 -37.13484 -35.22043 -34.55990 -33.30630 -32.15091 -29.42951 -28.33857 -26.76834 -26.06870 -22.97823 -21.12873 -20.52632 -20.18457 -18.62009 -18.36110 -17.87741 -17.43325 -16.44098 -16.12867 -15.88604 -15.39107 -15.15152 -14.90927 -14.66350 -14.51688 -14.40370 -13.97533 -13.85769 -13.29429 -13.03152 -12.79635 -12.66437 -12.53854 -12.33371 -12.03615 -12.01461 -11.38353 -11.16764 -11.01605 -10.51257 -10.42652 -10.25055 -9.88106 -9.59016 -8.54288 -6.17642 -0.19978 0.49765 0.76951 1.15759 1.29479 1.42495 1.66900 1.86523 1.92105 1.95349 2.15693 2.89381 2.93863 3.15386 3.58673 3.78966 3.99387 4.12545 4.21801 4.25676 4.30564 4.32855 4.41805 4.49074 4.66033 4.78080 4.93429 5.06078 5.10849 5.16824 5.31903 5.49846 5.99235 6.50080 6.72991 6.90319 6.95869 7.22579 7.82358 8.63373 Molecular weight = 278.08amu Principal moments of inertia in cm(-1) A = 0.020873 B = 0.005448 C = 0.004729 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1341.097449 B = 5137.958195 C = 5919.384083 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.236 4.236 3 C 0.190 3.810 4 N -0.478 5.478 5 C -0.333 4.333 6 H 0.039 0.961 7 C 0.013 3.987 8 N -0.909 5.909 9 Si 0.938 3.062 10 H -0.235 1.235 11 H -0.283 1.283 12 H -0.252 1.252 13 C 0.472 3.528 14 O -0.592 6.592 15 C -0.057 4.057 16 C 0.066 3.934 17 C -0.260 4.260 18 S 0.157 5.843 19 C 0.033 3.967 20 C -0.045 4.045 21 C -0.143 4.143 22 N -0.490 5.490 23 H 0.256 0.744 24 H 0.085 0.915 25 H 0.125 0.875 26 H 0.281 0.719 27 H 0.120 0.880 28 H 0.126 0.874 29 H 0.204 0.796 30 H 0.119 0.881 31 H 0.087 0.913 32 H 0.092 0.908 33 H 0.026 0.974 34 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.931 -16.430 -12.146 20.806 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.237 4.237 3 C 0.068 3.932 4 N -0.200 5.200 5 C -0.461 4.461 6 H 0.057 0.943 7 C -0.190 4.190 8 N -0.547 5.547 9 Si 0.760 3.240 10 H -0.160 1.160 11 H -0.209 1.209 12 H -0.176 1.176 13 C 0.261 3.739 14 O -0.474 6.474 15 C -0.099 4.099 16 C -0.066 4.066 17 C -0.399 4.399 18 S 0.412 5.588 19 C -0.246 4.246 20 C -0.086 4.086 21 C -0.202 4.202 22 N -0.205 5.205 23 H 0.272 0.728 24 H 0.102 0.898 25 H 0.142 0.858 26 H 0.090 0.910 27 H 0.138 0.862 28 H 0.144 0.856 29 H 0.221 0.779 30 H 0.137 0.863 31 H 0.105 0.895 32 H 0.111 0.889 33 H 0.045 0.955 34 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -3.576 -17.212 -11.390 20.947 hybrid contribution 0.210 1.877 0.109 1.892 sum -3.365 -15.335 -11.280 19.332 Atomic orbital electron populations 1.25719 0.96484 0.98874 0.98081 1.23762 0.95234 1.02318 1.02412 1.18987 0.85435 1.00114 0.88617 1.43760 1.58160 1.04710 1.13384 1.18556 1.39616 1.01090 0.86829 0.94283 1.26156 0.96273 0.94321 1.02200 1.69876 1.41360 1.05162 1.38253 0.85981 0.79074 0.79653 0.79307 1.15996 1.20927 1.17581 1.20978 0.80171 0.82662 0.90046 1.90556 1.49410 1.73113 1.34320 1.20290 1.05017 0.87695 0.96896 1.19786 0.88626 0.96870 1.01310 1.27108 1.05513 0.95469 1.11799 1.83291 1.05069 1.10267 1.60162 1.27616 1.01759 0.92291 1.02910 1.20366 0.91517 1.00148 0.96555 1.21740 1.03543 1.01200 0.93727 1.65969 1.27740 1.12729 1.14025 0.72761 0.89758 0.85780 0.90958 0.86223 0.85624 0.77921 0.86306 0.89475 0.88905 0.95504 0.91979 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -5.08 19.25 74.32 1.43 -3.65 16 2 C -0.24 -8.52 12.90 31.13 0.40 -8.12 16 3 C 0.19 7.55 4.27 84.57 0.36 7.91 16 4 N -0.48 -24.22 2.15 -645.42 -1.39 -25.61 16 5 C -0.33 -20.43 9.36 84.04 0.79 -19.65 16 6 H 0.04 2.82 7.91 -2.91 -0.02 2.80 16 7 C 0.01 0.74 5.26 84.93 0.45 1.18 16 8 N -0.91 -55.56 13.96 21.66 0.30 -55.25 16 9 Si 0.94 42.17 25.05 68.60 1.72 43.89 16 10 H -0.24 -9.13 6.69 99.48 0.67 -8.47 16 11 H -0.28 -12.62 7.11 99.48 0.71 -11.92 16 12 H -0.25 -10.97 7.11 99.48 0.71 -10.27 16 13 C 0.47 23.35 7.53 87.66 0.66 24.01 16 14 O -0.59 -35.28 15.31 -3.09 -0.05 -35.33 16 15 C -0.06 -2.00 4.80 29.10 0.14 -1.86 16 16 C 0.07 2.33 5.64 41.52 0.23 2.56 16 17 C -0.26 -7.03 11.07 66.78 0.74 -6.29 16 18 S 0.16 3.63 23.18 -56.49 -1.31 2.32 16 19 C 0.03 0.97 6.64 88.52 0.59 1.56 16 20 C -0.05 -1.02 6.52 29.85 0.19 -0.82 16 21 C -0.14 -3.32 9.89 71.98 0.71 -2.61 16 22 N -0.49 -18.88 9.68 -179.39 -1.74 -20.62 16 23 H 0.26 4.75 7.80 -4.42 -0.03 4.72 16 24 H 0.08 3.50 3.62 -2.39 -0.01 3.50 16 25 H 0.12 3.82 6.70 -2.38 -0.02 3.80 16 26 H 0.28 15.63 8.31 -92.71 -0.77 14.86 16 27 H 0.12 3.64 7.42 -2.39 -0.02 3.62 16 28 H 0.13 3.63 7.36 -2.39 -0.02 3.61 16 29 H 0.20 4.02 8.06 -2.91 -0.02 3.99 16 30 H 0.12 1.73 8.14 -2.39 -0.02 1.71 16 31 H 0.09 2.05 8.14 -2.39 -0.02 2.03 16 32 H 0.09 1.59 8.14 -2.38 -0.02 1.57 16 33 H 0.03 0.83 8.14 -2.39 -0.02 0.81 16 34 H 0.06 1.32 8.14 -2.39 -0.02 1.30 16 Total: -1.00 -84.03 311.26 5.30 -78.73 By element: Atomic # 1 Polarization: 16.60 SS G_CDS: 1.07 Total: 17.67 kcal Atomic # 6 Polarization: -12.48 SS G_CDS: 6.69 Total: -5.79 kcal Atomic # 7 Polarization: -98.66 SS G_CDS: -2.82 Total: -101.49 kcal Atomic # 8 Polarization: -35.28 SS G_CDS: -0.05 Total: -35.33 kcal Atomic # 14 Polarization: 42.17 SS G_CDS: 1.72 Total: 43.89 kcal Atomic # 16 Polarization: 3.63 SS G_CDS: -1.31 Total: 2.32 kcal Total: -84.03 5.30 -78.73 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000281557066.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 131.992 kcal (2) G-P(sol) polarization free energy of solvation -84.032 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.960 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.302 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.729 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.262 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds