Wall clock time and date at job start Tue Mar 31 2020 00:05:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17402 * 1 3 3 C 1.47194 * 179.97438 * 2 1 4 4 N 1.46502 * 109.47384 * 111.13073 * 3 2 1 5 5 C 1.33319 * 119.99925 * 263.22763 * 4 3 2 6 6 H 1.07997 * 120.00087 * 201.21406 * 5 4 3 7 7 C 1.46788 * 120.00354 * 21.20959 * 5 4 3 8 8 N 1.29320 * 119.99522 * 9.52886 * 7 5 4 9 9 Si 1.86795 * 120.00194 * 189.52712 * 7 5 4 10 10 H 1.48502 * 109.47274 * 60.00207 * 9 7 5 11 11 H 1.48500 * 109.46954 * 179.97438 * 9 7 5 12 12 H 1.48497 * 109.47061 * 300.00048 * 9 7 5 13 13 C 1.34776 * 120.00062 * 83.21704 * 4 3 2 14 14 O 1.21487 * 119.99904 * 184.42090 * 13 4 3 15 15 C 1.47551 * 119.99880 * 4.42882 * 13 4 3 16 16 N 1.31878 * 126.47075 * 354.31983 * 15 13 4 17 17 N 1.28477 * 110.09223 * 180.02562 * 16 15 13 18 18 H 0.97004 * 124.92791 * 180.02562 * 17 16 15 19 19 C 1.35604 * 110.13870 * 359.74987 * 17 16 15 20 20 C 1.50696 * 126.41423 * 180.30421 * 19 17 16 21 21 C 1.35337 * 107.16839 * 0.40081 * 19 17 16 22 22 N 1.48009 * 127.22976 * 179.88446 * 21 19 17 23 23 O 1.31706 * 119.99756 * 269.70543 * 22 21 19 24 24 O 1.31700 * 120.00270 * 89.42926 * 22 21 19 25 25 H 4.40644 * 5.51392 * 180.02562 * 4 1 2 26 26 H 1.09003 * 109.47639 * 351.12749 * 3 2 1 27 27 H 1.08999 * 109.47229 * 231.12912 * 3 2 1 28 28 H 0.96999 * 119.99854 * 180.02562 * 8 7 5 29 29 H 1.09002 * 109.47191 * 270.11326 * 20 19 17 30 30 H 1.08997 * 109.47509 * 30.11510 * 20 19 17 31 31 H 1.09003 * 109.47042 * 150.12011 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1341 0.4988 -1.2883 5 6 3.4851 -0.3603 -2.2455 6 1 4.1471 -0.0446 -3.0383 7 6 2.9719 -1.7353 -2.2219 8 7 2.0409 -2.0637 -1.3866 9 14 3.6636 -3.0107 -3.3984 10 1 5.1206 -3.1675 -3.1579 11 1 2.9827 -4.3113 -3.1746 12 1 3.4377 -2.5675 -4.7976 13 6 3.2282 1.8255 -1.5060 14 8 3.5561 2.2398 -2.6000 15 6 2.9333 2.7748 -0.4156 16 7 2.4689 2.4738 0.7815 17 7 2.3271 3.5420 1.4813 18 1 2.0000 3.5686 2.3941 19 6 2.7067 4.6261 0.7605 20 6 2.6960 6.0589 1.2271 21 6 3.0948 4.1805 -0.4570 22 7 3.5902 4.9918 -1.5914 23 8 2.7432 5.4644 -2.4824 24 8 4.8773 5.2458 -1.7069 25 1 -1.0501 0.0001 0.0002 26 1 3.0099 -1.0145 0.1585 27 1 3.0090 0.6457 0.8001 28 1 1.7020 -2.9724 -1.3707 29 1 1.7312 6.5097 0.9944 30 1 2.8620 6.0917 2.3039 31 1 3.4870 6.6119 0.7205 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000281983290.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:05:56 Heat of formation + Delta-G solvation = 154.869199 kcal Electronic energy + Delta-G solvation = -21620.552941 eV Core-core repulsion = 18104.850883 eV Total energy + Delta-G solvation = -3515.702058 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 278.085 amu Computer time = 1.23 seconds Orbital eigenvalues (eV) -42.93721 -38.62227 -38.22825 -35.29370 -33.86312 -33.23944 -32.45712 -31.94936 -31.51097 -28.18062 -26.53126 -25.87540 -25.29330 -22.85204 -21.00541 -19.43692 -18.29318 -18.02531 -17.77479 -16.96394 -16.75272 -16.16839 -15.81159 -15.09078 -15.00484 -14.21833 -14.12765 -13.44797 -13.33442 -13.12831 -12.75736 -12.53783 -12.39155 -11.78717 -11.19288 -10.98746 -10.98326 -10.75239 -10.55564 -10.43478 -10.18061 -9.66248 -9.58629 -9.44202 -9.26577 -8.89506 -8.71228 -8.24006 -6.73748 -3.91125 0.24361 1.36912 1.41817 1.77120 2.73639 3.05906 3.08815 3.12083 3.65625 3.90465 4.01712 4.07780 4.16278 4.43261 4.51269 4.83001 4.84202 5.03743 5.26005 5.35385 5.45215 5.49515 5.78857 6.24780 6.43210 6.66928 6.75770 6.98761 7.04838 7.14220 7.66895 7.80242 8.20140 8.77632 8.89276 9.08300 9.80921 10.22231 Molecular weight = 278.08amu Principal moments of inertia in cm(-1) A = 0.022585 B = 0.006346 C = 0.005312 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1239.440534 B = 4411.493605 C = 5270.138766 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.272 4.272 2 C -0.094 4.094 3 C 0.211 3.789 4 N -0.372 5.372 5 C -0.338 4.338 6 H 0.114 0.886 7 C 0.044 3.956 8 N -0.816 5.816 9 Si 0.937 3.063 10 H -0.265 1.265 11 H -0.280 1.280 12 H -0.265 1.265 13 C 0.460 3.540 14 O -0.579 6.579 15 C 0.093 3.907 16 N -0.250 5.250 17 N -0.379 5.379 18 H 0.453 0.547 19 C 0.083 3.917 20 C -0.097 4.097 21 C -0.081 4.081 22 N 0.020 4.980 23 O -0.137 6.137 24 O -0.145 6.145 25 H 0.198 0.802 26 H 0.114 0.886 27 H 0.090 0.910 28 H 0.283 0.717 29 H 0.093 0.907 30 H 0.088 0.912 31 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.548 7.091 11.355 13.476 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.291 4.291 2 C -0.095 4.095 3 C 0.088 3.912 4 N -0.084 5.084 5 C -0.468 4.468 6 H 0.132 0.868 7 C -0.171 4.171 8 N -0.448 5.448 9 Si 0.762 3.238 10 H -0.190 1.190 11 H -0.205 1.205 12 H -0.190 1.190 13 C 0.250 3.750 14 O -0.464 6.464 15 C -0.069 4.069 16 N -0.083 5.083 17 N -0.092 5.092 18 H 0.300 0.700 19 C -0.048 4.048 20 C -0.155 4.155 21 C -0.177 4.177 22 N 0.517 4.483 23 O -0.343 6.343 24 O -0.348 6.348 25 H 0.215 0.785 26 H 0.132 0.868 27 H 0.107 0.893 28 H 0.096 0.904 29 H 0.112 0.888 30 H 0.107 0.893 31 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -2.065 5.747 12.125 13.576 hybrid contribution -0.060 0.059 -0.725 0.730 sum -2.124 5.806 11.399 12.968 Atomic orbital electron populations 1.24209 0.95321 1.06374 1.03185 1.22878 0.93971 0.95311 0.97364 1.18840 0.84868 1.01769 0.85705 1.42473 1.50133 1.03623 1.12206 1.20700 1.28070 0.90000 1.08075 0.86812 1.27081 0.94086 0.98866 0.97078 1.69027 1.21494 1.20869 1.33422 0.85812 0.79497 0.77905 0.80582 1.19025 1.20550 1.18981 1.16416 0.91194 0.81656 0.85727 1.90674 1.56015 1.76409 1.23311 1.22618 1.00604 0.90375 0.93313 1.74313 1.20569 1.09587 1.03869 1.43397 1.48096 1.02413 1.15250 0.70020 1.20819 1.00908 0.92933 0.90168 1.20594 1.04882 0.87090 1.02967 1.19529 1.18635 0.91294 0.88243 1.48953 1.02060 0.96993 1.00302 1.96253 1.51028 1.52767 1.34246 1.96241 0.92943 1.62853 1.82801 0.78504 0.86802 0.89267 0.90430 0.88843 0.89340 0.89327 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 36. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.27 -5.69 19.25 29.55 0.57 -5.12 16 2 C -0.09 -2.12 10.67 -37.13 -0.40 -2.52 16 3 C 0.21 4.78 4.74 -6.83 -0.03 4.74 16 4 N -0.37 -9.72 2.51 -117.56 -0.30 -10.02 16 5 C -0.34 -9.20 9.51 -13.45 -0.13 -9.33 16 6 H 0.11 3.25 7.46 -52.49 -0.39 2.86 16 7 C 0.04 1.08 5.28 -15.15 -0.08 1.00 16 8 N -0.82 -19.96 9.12 56.00 0.51 -19.45 16 9 Si 0.94 19.30 29.65 -169.99 -5.04 14.26 16 10 H -0.27 -5.36 7.11 56.52 0.40 -4.96 16 11 H -0.28 -5.55 7.11 56.52 0.40 -5.15 16 12 H -0.27 -5.62 7.11 56.52 0.40 -5.21 16 13 C 0.46 12.33 7.52 -12.46 -0.09 12.24 16 14 O -0.58 -17.56 16.13 5.38 0.09 -17.47 16 15 C 0.09 2.05 6.79 -82.79 -0.56 1.49 16 16 N -0.25 -4.44 8.05 33.41 0.27 -4.17 16 17 N -0.38 -4.74 6.86 33.59 0.23 -4.51 16 18 H 0.45 3.28 8.96 -190.43 -1.71 1.57 16 19 C 0.08 1.13 7.25 -81.96 -0.59 0.54 16 20 C -0.10 -0.82 10.44 36.00 0.38 -0.45 16 21 C -0.08 -1.60 6.87 -79.72 -0.55 -2.15 16 22 N 0.02 0.44 4.47 34.07 0.15 0.59 16 23 O -0.14 -3.07 19.97 -31.57 -0.63 -3.70 16 24 O -0.14 -3.16 19.97 -31.57 -0.63 -3.79 16 25 H 0.20 3.37 7.80 -54.09 -0.42 2.95 16 26 H 0.11 2.63 6.25 -51.93 -0.32 2.31 16 27 H 0.09 1.81 5.33 -51.93 -0.28 1.54 16 28 H 0.28 6.46 8.26 -40.82 -0.34 6.12 16 29 H 0.09 0.68 8.14 -51.93 -0.42 0.25 16 30 H 0.09 0.44 8.14 -51.93 -0.42 0.01 16 31 H 0.09 0.83 8.14 -51.93 -0.42 0.41 16 LS Contribution 294.87 15.07 4.44 4.44 Total: -1.00 -34.77 294.87 -5.92 -40.69 By element: Atomic # 1 Polarization: 6.21 SS G_CDS: -3.52 Total: 2.69 kcal Atomic # 6 Polarization: 1.93 SS G_CDS: -1.49 Total: 0.44 kcal Atomic # 7 Polarization: -38.42 SS G_CDS: 0.87 Total: -37.55 kcal Atomic # 8 Polarization: -23.80 SS G_CDS: -1.17 Total: -24.97 kcal Atomic # 14 Polarization: 19.30 SS G_CDS: -5.04 Total: 14.26 kcal Total LS contribution 4.44 Total: 4.44 kcal Total: -34.77 -5.92 -40.69 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000281983290.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 195.556 kcal (2) G-P(sol) polarization free energy of solvation -34.771 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 160.785 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.916 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.686 kcal (6) G-S(sol) free energy of system = (1) + (5) 154.869 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.24 seconds