Wall clock time and date at job start Tue Mar 31 2020 00:05:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17402 * 1 3 3 C 1.47194 * 179.97438 * 2 1 4 4 N 1.46502 * 109.47384 * 111.13073 * 3 2 1 5 5 C 1.33319 * 119.99925 * 263.22763 * 4 3 2 6 6 H 1.07997 * 120.00087 * 201.21406 * 5 4 3 7 7 C 1.46788 * 120.00354 * 21.20959 * 5 4 3 8 8 N 1.29320 * 119.99522 * 9.52886 * 7 5 4 9 9 Si 1.86795 * 120.00194 * 189.52712 * 7 5 4 10 10 H 1.48502 * 109.47274 * 60.00207 * 9 7 5 11 11 H 1.48500 * 109.46954 * 179.97438 * 9 7 5 12 12 H 1.48497 * 109.47061 * 300.00048 * 9 7 5 13 13 C 1.34776 * 120.00062 * 83.21704 * 4 3 2 14 14 O 1.21487 * 119.99904 * 184.42090 * 13 4 3 15 15 C 1.47551 * 119.99880 * 4.42882 * 13 4 3 16 16 N 1.31878 * 126.47075 * 354.31983 * 15 13 4 17 17 N 1.28477 * 110.09223 * 180.02562 * 16 15 13 18 18 H 0.97004 * 124.92791 * 180.02562 * 17 16 15 19 19 C 1.35604 * 110.13870 * 359.74987 * 17 16 15 20 20 C 1.50696 * 126.41423 * 180.30421 * 19 17 16 21 21 C 1.35337 * 107.16839 * 0.40081 * 19 17 16 22 22 N 1.48009 * 127.22976 * 179.88446 * 21 19 17 23 23 O 1.31706 * 119.99756 * 269.70543 * 22 21 19 24 24 O 1.31700 * 120.00270 * 89.42926 * 22 21 19 25 25 H 4.40644 * 5.51392 * 180.02562 * 4 1 2 26 26 H 1.09003 * 109.47639 * 351.12749 * 3 2 1 27 27 H 1.08999 * 109.47229 * 231.12912 * 3 2 1 28 28 H 0.96999 * 119.99854 * 180.02562 * 8 7 5 29 29 H 1.09002 * 109.47191 * 270.11326 * 20 19 17 30 30 H 1.08997 * 109.47509 * 30.11510 * 20 19 17 31 31 H 1.09003 * 109.47042 * 150.12011 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1341 0.4988 -1.2883 5 6 3.4851 -0.3603 -2.2455 6 1 4.1471 -0.0446 -3.0383 7 6 2.9719 -1.7353 -2.2219 8 7 2.0409 -2.0637 -1.3866 9 14 3.6636 -3.0107 -3.3984 10 1 5.1206 -3.1675 -3.1579 11 1 2.9827 -4.3113 -3.1746 12 1 3.4377 -2.5675 -4.7976 13 6 3.2282 1.8255 -1.5060 14 8 3.5561 2.2398 -2.6000 15 6 2.9333 2.7748 -0.4156 16 7 2.4689 2.4738 0.7815 17 7 2.3271 3.5420 1.4813 18 1 2.0000 3.5686 2.3941 19 6 2.7067 4.6261 0.7605 20 6 2.6960 6.0589 1.2271 21 6 3.0948 4.1805 -0.4570 22 7 3.5902 4.9918 -1.5914 23 8 2.7432 5.4644 -2.4824 24 8 4.8773 5.2458 -1.7069 25 1 -1.0501 0.0001 0.0002 26 1 3.0099 -1.0145 0.1585 27 1 3.0090 0.6457 0.8001 28 1 1.7020 -2.9724 -1.3707 29 1 1.7312 6.5097 0.9944 30 1 2.8620 6.0917 2.3039 31 1 3.4870 6.6119 0.7205 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000281983290.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:05:55 Heat of formation + Delta-G solvation = 130.036861 kcal Electronic energy + Delta-G solvation = -21621.629752 eV Core-core repulsion = 18104.850883 eV Total energy + Delta-G solvation = -3516.778869 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 278.085 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -44.32136 -40.53458 -39.88593 -37.27269 -35.56687 -34.65208 -34.04791 -33.48379 -33.29697 -29.44857 -28.30597 -27.35178 -27.05072 -24.54276 -22.44551 -21.14456 -19.95878 -19.62898 -19.44220 -18.65190 -18.21553 -17.89615 -17.19556 -16.89338 -16.60421 -16.02704 -15.87295 -14.89869 -14.52403 -14.42447 -14.32747 -14.03473 -13.75172 -13.45110 -12.89375 -12.71827 -12.70312 -12.51695 -12.15699 -12.08048 -11.91931 -11.41552 -11.23951 -11.07620 -10.82646 -10.73196 -10.48565 -10.15095 -8.63099 -5.95818 -1.46722 -0.08989 0.09564 0.18245 1.38338 1.38569 1.46313 1.58315 1.92288 2.12875 2.25647 2.39188 2.66962 2.89184 3.14173 3.28181 3.42126 3.80962 3.86432 4.07131 4.44923 4.52549 4.59590 4.76080 4.86886 4.90554 5.10237 5.35870 5.41760 5.61859 5.79562 6.21864 6.36491 6.92290 7.08415 7.14102 7.85063 8.31229 Molecular weight = 278.08amu Principal moments of inertia in cm(-1) A = 0.022585 B = 0.006346 C = 0.005312 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1239.440534 B = 4411.493605 C = 5270.138766 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.253 4.253 2 C -0.134 4.134 3 C 0.218 3.782 4 N -0.378 5.378 5 C -0.393 4.393 6 H 0.081 0.919 7 C 0.022 3.978 8 N -0.821 5.821 9 Si 1.001 2.999 10 H -0.259 1.259 11 H -0.257 1.257 12 H -0.277 1.277 13 C 0.440 3.560 14 O -0.636 6.636 15 C 0.060 3.940 16 N -0.240 5.240 17 N -0.343 5.343 18 H 0.481 0.519 19 C 0.131 3.869 20 C -0.098 4.098 21 C -0.129 4.129 22 N 0.024 4.976 23 O -0.164 6.164 24 O -0.153 6.153 25 H 0.233 0.767 26 H 0.103 0.897 27 H 0.110 0.890 28 H 0.294 0.706 29 H 0.117 0.883 30 H 0.139 0.861 31 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.044 7.309 14.363 16.401 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.272 4.272 2 C -0.136 4.136 3 C 0.096 3.904 4 N -0.089 5.089 5 C -0.522 4.522 6 H 0.098 0.902 7 C -0.192 4.192 8 N -0.451 5.451 9 Si 0.822 3.178 10 H -0.184 1.184 11 H -0.180 1.180 12 H -0.203 1.203 13 C 0.231 3.769 14 O -0.526 6.526 15 C -0.102 4.102 16 N -0.074 5.074 17 N -0.061 5.061 18 H 0.335 0.665 19 C -0.001 4.001 20 C -0.156 4.156 21 C -0.224 4.224 22 N 0.519 4.481 23 O -0.366 6.366 24 O -0.358 6.358 25 H 0.250 0.750 26 H 0.121 0.879 27 H 0.127 0.873 28 H 0.106 0.894 29 H 0.135 0.865 30 H 0.157 0.843 31 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -3.621 5.939 15.207 16.723 hybrid contribution 0.320 0.058 -1.483 1.519 sum -3.302 5.997 13.724 15.337 Atomic orbital electron populations 1.25080 0.96248 1.04559 1.01268 1.23044 0.94419 0.97003 0.99105 1.18833 0.85485 1.01385 0.84719 1.42648 1.49685 1.03537 1.13043 1.20599 1.30463 0.91935 1.09236 0.90151 1.27791 0.93895 0.99231 0.98331 1.69059 1.20966 1.21764 1.33330 0.84917 0.79326 0.76016 0.77567 1.18384 1.18035 1.20254 1.17049 0.90837 0.82477 0.86518 1.90594 1.58372 1.77650 1.26006 1.21908 1.03844 0.90537 0.93903 1.74121 1.19256 1.11461 1.02586 1.43494 1.45771 1.00946 1.15859 0.66509 1.21511 0.96198 0.95086 0.87330 1.20965 1.05934 0.82745 1.05948 1.19898 1.22206 0.90629 0.89642 1.49174 1.01744 0.96624 1.00591 1.96232 1.50957 1.54086 1.35312 1.96212 0.93482 1.63171 1.82982 0.75008 0.87903 0.87303 0.89385 0.86460 0.84287 0.89986 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.25 -10.06 19.25 74.32 1.43 -8.63 16 2 C -0.13 -5.98 10.67 31.12 0.33 -5.65 16 3 C 0.22 10.00 4.74 84.57 0.40 10.40 16 4 N -0.38 -20.73 2.51 -644.15 -1.62 -22.35 16 5 C -0.39 -22.67 9.51 86.70 0.82 -21.84 16 6 H 0.08 5.03 7.46 -2.91 -0.02 5.01 16 7 C 0.02 1.12 5.28 87.30 0.46 1.58 16 8 N -0.82 -40.01 9.12 23.26 0.21 -39.80 16 9 Si 1.00 39.96 29.65 68.60 2.03 42.00 16 10 H -0.26 -10.07 7.11 99.48 0.71 -9.37 16 11 H -0.26 -9.22 7.11 99.48 0.71 -8.51 16 12 H -0.28 -11.58 7.11 99.48 0.71 -10.87 16 13 C 0.44 24.88 7.52 86.70 0.65 25.54 16 14 O -0.64 -41.54 16.13 -3.68 -0.06 -41.60 16 15 C 0.06 2.67 6.79 42.41 0.29 2.96 16 16 N -0.24 -8.12 8.05 -48.22 -0.39 -8.51 16 17 N -0.34 -7.24 6.86 -47.64 -0.33 -7.57 16 18 H 0.48 4.29 8.96 -219.98 -1.97 2.32 16 19 C 0.13 3.15 7.25 41.30 0.30 3.45 16 20 C -0.10 -1.17 10.44 71.23 0.74 -0.43 16 21 C -0.13 -5.02 6.87 36.53 0.25 -4.77 16 22 N 0.02 1.05 4.47 -46.12 -0.21 0.85 16 23 O -0.16 -7.59 19.97 3.50 0.07 -7.52 16 24 O -0.15 -6.89 19.97 3.51 0.07 -6.82 16 25 H 0.23 7.11 7.80 -4.41 -0.03 7.08 16 26 H 0.10 4.85 6.25 -2.39 -0.01 4.84 16 27 H 0.11 4.42 5.33 -2.39 -0.01 4.41 16 28 H 0.29 13.01 8.26 -92.71 -0.77 12.25 16 29 H 0.12 1.04 8.14 -2.39 -0.02 1.02 16 30 H 0.14 0.37 8.14 -2.39 -0.02 0.35 16 31 H 0.08 1.23 8.14 -2.39 -0.02 1.21 16 Total: -1.00 -83.69 294.87 4.71 -78.98 By element: Atomic # 1 Polarization: 10.50 SS G_CDS: -0.76 Total: 9.74 kcal Atomic # 6 Polarization: -3.08 SS G_CDS: 5.68 Total: 2.61 kcal Atomic # 7 Polarization: -75.05 SS G_CDS: -2.33 Total: -77.38 kcal Atomic # 8 Polarization: -56.03 SS G_CDS: 0.08 Total: -55.95 kcal Atomic # 14 Polarization: 39.96 SS G_CDS: 2.03 Total: 42.00 kcal Total: -83.69 4.71 -78.98 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000281983290.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 209.018 kcal (2) G-P(sol) polarization free energy of solvation -83.693 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 125.324 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.713 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.981 kcal (6) G-S(sol) free energy of system = (1) + (5) 130.037 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds