Wall clock time and date at job start Tue Mar 31 2020 00:22:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86797 * 119.99879 * 2 1 4 4 H 1.48494 * 109.47402 * 270.00418 * 3 2 1 5 5 H 1.48503 * 109.47434 * 30.00658 * 3 2 1 6 6 H 1.48505 * 109.47148 * 150.00082 * 3 2 1 7 7 C 1.37874 * 120.00036 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00007 * 179.97438 * 7 2 1 9 9 C 1.50703 * 119.99725 * 359.97438 * 7 2 1 10 10 C 1.53001 * 109.46839 * 180.02562 * 9 7 2 11 11 C 1.50703 * 109.47216 * 179.97438 * 10 9 7 12 12 O 1.20835 * 119.99558 * 0.02562 * 11 10 9 13 13 O 1.34242 * 120.00094 * 179.97438 * 11 10 9 14 14 C 1.35983 * 116.99821 * 185.77655 * 13 11 10 15 15 C 1.38714 * 120.00097 * 248.72502 * 14 13 11 16 16 C 1.38155 * 120.05297 * 179.83732 * 15 14 13 17 17 C 1.38699 * 120.13973 * 0.51485 * 16 15 14 18 18 C 1.38981 * 119.91096 * 359.64768 * 17 16 15 19 19 C 1.38630 * 120.00408 * 68.99890 * 14 13 11 20 20 O 1.36115 * 120.78728 * 180.25564 * 18 17 16 21 21 C 1.43169 * 116.72411 * 342.80723 * 20 18 17 22 22 C 1.53467 * 108.24798 * 46.18559 * 21 20 18 23 23 O 1.36193 * 119.33405 * 179.55766 * 17 16 15 24 24 H 0.97005 * 119.99885 * 359.97438 * 1 2 3 25 25 H 1.08991 * 109.47091 * 60.00278 * 9 7 2 26 26 H 1.08998 * 109.47263 * 300.00043 * 9 7 2 27 27 H 1.08997 * 109.47789 * 59.99942 * 10 9 7 28 28 H 1.08998 * 109.46911 * 299.99870 * 10 9 7 29 29 H 1.08002 * 119.97523 * 0.05231 * 15 14 13 30 30 H 1.08000 * 119.92601 * 180.27271 * 16 15 14 31 31 H 1.08006 * 119.98338 * 359.94845 * 19 14 13 32 32 H 1.09003 * 109.70756 * 165.88023 * 21 20 18 33 33 H 1.08999 * 109.70488 * 286.49222 * 21 20 18 34 34 H 1.09000 * 109.70975 * 59.92805 * 22 21 20 35 35 H 1.09007 * 109.70962 * 180.55489 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4965 2.0465 -1.4000 5 1 1.4466 2.6527 0.7002 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2509 -2.4991 -0.0005 10 6 2.2452 -3.6620 -0.0005 11 6 1.4917 -4.9672 0.0001 12 8 0.2834 -4.9671 0.0000 13 8 2.1629 -6.1298 -0.0003 14 6 1.4275 -7.2671 -0.1216 15 6 1.3204 -8.1414 0.9499 16 6 0.5708 -9.2956 0.8289 17 6 -0.0679 -9.5890 -0.3668 18 6 0.0408 -8.7163 -1.4429 19 6 0.7895 -7.5558 -1.3181 20 8 -0.5827 -8.9841 -2.6228 21 6 -1.0157 -10.3328 -2.8307 22 6 -1.7251 -10.8114 -1.5567 23 8 -0.7952 -10.7358 -0.4708 24 1 -0.4850 0.8401 0.0004 25 1 0.6240 -2.5566 -0.8902 26 1 0.6246 -2.5570 0.8897 27 1 2.8719 -3.6044 0.8894 28 1 2.8718 -3.6043 -0.8905 29 1 1.8205 -7.9180 1.8807 30 1 0.4851 -9.9726 1.6660 31 1 0.8760 -6.8767 -2.1535 32 1 -1.7066 -10.3714 -3.6729 33 1 -0.1537 -10.9686 -3.0324 34 1 -2.5832 -10.1715 -1.3513 35 1 -2.0568 -11.8418 -1.6857 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000291073205.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:22:23 Heat of formation + Delta-G solvation = -129.324638 kcal Electronic energy + Delta-G solvation = -20748.190885 eV Core-core repulsion = 17291.412849 eV Total energy + Delta-G solvation = -3456.778035 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.103 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.54489 -40.65803 -37.77022 -37.44892 -36.12862 -33.62041 -31.39332 -31.17282 -30.48925 -28.45729 -26.19862 -24.90741 -23.54216 -22.41479 -21.02414 -20.00034 -18.89392 -18.02528 -17.64455 -17.12784 -16.50695 -15.81605 -15.73035 -15.41275 -15.17290 -14.61863 -14.49954 -14.24607 -14.01675 -13.82455 -13.05309 -12.92702 -12.77296 -12.26350 -12.19212 -11.41721 -11.37286 -11.15479 -10.98168 -10.87623 -10.67623 -10.62989 -10.09216 -10.02683 -9.64615 -9.20893 -8.76878 -8.39403 -8.12828 -6.02984 -4.08242 0.97698 1.13371 2.64516 2.75768 2.86172 3.14700 3.31207 3.37542 3.40337 3.70329 3.93740 4.40411 4.43303 4.50755 4.59217 4.89106 4.94713 5.05534 5.14651 5.21982 5.32544 5.35847 5.61939 5.84624 5.95951 6.05696 6.11331 6.20197 6.34818 6.64445 6.71333 6.90022 7.19620 7.64087 7.69645 7.95561 8.22122 8.37018 8.98674 9.56035 11.07957 Molecular weight = 278.10amu Principal moments of inertia in cm(-1) A = 0.038185 B = 0.003179 C = 0.003062 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 733.089817 B = 8804.824302 C = 9142.072605 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.059 3.941 3 Si 0.896 3.104 4 H -0.280 1.280 5 H -0.286 1.286 6 H -0.273 1.273 7 C -0.529 4.529 8 H 0.060 0.940 9 C 0.032 3.968 10 C -0.100 4.100 11 C 0.453 3.547 12 O -0.484 6.484 13 O -0.300 6.300 14 C 0.102 3.898 15 C -0.116 4.116 16 C -0.098 4.098 17 C 0.043 3.957 18 C 0.068 3.932 19 C -0.122 4.122 20 O -0.304 6.304 21 C 0.020 3.980 22 C 0.019 3.981 23 O -0.307 6.307 24 H 0.262 0.738 25 H 0.027 0.973 26 H 0.027 0.973 27 H 0.096 0.904 28 H 0.096 0.904 29 H 0.143 0.857 30 H 0.143 0.857 31 H 0.140 0.860 32 H 0.122 0.878 33 H 0.078 0.922 34 H 0.079 0.921 35 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.186 -23.049 -2.672 23.204 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.143 4.143 3 Si 0.724 3.276 4 H -0.206 1.206 5 H -0.212 1.212 6 H -0.198 1.198 7 C -0.567 4.567 8 H 0.078 0.922 9 C -0.005 4.005 10 C -0.137 4.137 11 C 0.296 3.704 12 O -0.367 6.367 13 O -0.217 6.217 14 C 0.061 3.939 15 C -0.134 4.134 16 C -0.117 4.117 17 C -0.002 4.002 18 C 0.022 3.978 19 C -0.141 4.141 20 O -0.218 6.218 21 C -0.055 4.055 22 C -0.056 4.056 23 O -0.222 6.222 24 H 0.072 0.928 25 H 0.045 0.955 26 H 0.045 0.955 27 H 0.114 0.886 28 H 0.114 0.886 29 H 0.160 0.840 30 H 0.160 0.840 31 H 0.158 0.842 32 H 0.140 0.860 33 H 0.096 0.904 34 H 0.097 0.903 35 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -0.418 -22.964 -2.691 23.125 hybrid contribution 0.141 0.729 -0.232 0.778 sum -0.277 -22.235 -2.924 22.428 Atomic orbital electron populations 1.69994 1.06109 1.26813 1.49795 1.25022 0.94861 0.99368 0.95071 0.86529 0.79761 0.83172 0.78141 1.20593 1.21184 1.19756 1.21132 0.93095 0.90533 1.51975 0.92218 1.19051 0.93220 0.89196 0.99033 1.21832 1.00751 0.86774 1.04379 1.25318 0.88265 0.84993 0.71774 1.90685 1.15658 1.86773 1.43542 1.84765 1.39836 1.13317 1.83789 1.18151 0.95761 0.87315 0.92722 1.20895 0.99958 0.94384 0.98210 1.20233 0.98616 0.97597 0.95219 1.18863 0.98430 0.88748 0.94162 1.18504 0.97860 0.96276 0.85120 1.20529 0.97571 0.97129 0.98836 1.86349 1.72670 1.28987 1.33818 1.23645 1.00481 0.82477 0.98917 1.23643 0.91442 1.04548 0.85987 1.86313 1.51966 1.34367 1.49513 0.92810 0.95506 0.95460 0.88558 0.88561 0.83955 0.83965 0.84196 0.85972 0.90415 0.90303 0.86014 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.92 13.29 55.43 0.74 -26.19 16 2 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 3 Si 0.90 21.35 29.54 -169.99 -5.02 16.33 16 4 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 5 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 6 H -0.27 -6.30 7.11 56.52 0.40 -5.89 16 7 C -0.53 -14.67 9.11 -34.44 -0.31 -14.98 16 8 H 0.06 1.55 7.74 -52.49 -0.41 1.15 16 9 C 0.03 0.84 4.26 -27.88 -0.12 0.72 16 10 C -0.10 -2.01 5.75 -27.88 -0.16 -2.17 16 11 C 0.45 9.02 7.73 36.01 0.28 9.30 16 12 O -0.48 -11.24 15.39 -18.76 -0.29 -11.53 16 13 O -0.30 -5.19 10.04 -23.74 -0.24 -5.43 16 14 C 0.10 1.66 5.27 -39.26 -0.21 1.45 16 15 C -0.12 -1.56 9.98 -39.44 -0.39 -1.96 16 16 C -0.10 -1.21 9.96 -39.44 -0.39 -1.60 16 17 C 0.04 0.57 6.49 -39.14 -0.25 0.31 16 18 C 0.07 0.98 6.49 -39.15 -0.25 0.73 16 19 C -0.12 -1.95 9.24 -39.28 -0.36 -2.31 16 20 O -0.30 -3.99 10.42 -32.89 -0.34 -4.33 16 21 C 0.02 0.17 7.26 37.40 0.27 0.44 16 22 C 0.02 0.15 7.26 37.40 0.27 0.42 16 23 O -0.31 -3.51 10.42 -33.14 -0.35 -3.85 16 24 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 25 H 0.03 0.76 8.10 -51.93 -0.42 0.34 16 26 H 0.03 0.77 8.10 -51.93 -0.42 0.35 16 27 H 0.10 1.75 8.14 -51.93 -0.42 1.33 16 28 H 0.10 1.75 8.14 -51.93 -0.42 1.33 16 29 H 0.14 1.60 8.06 -52.49 -0.42 1.18 16 30 H 0.14 1.36 8.06 -52.49 -0.42 0.93 16 31 H 0.14 2.25 8.06 -52.48 -0.42 1.82 16 32 H 0.12 0.62 8.14 -51.93 -0.42 0.19 16 33 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 34 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 35 H 0.12 0.52 8.14 -51.92 -0.42 0.10 16 LS Contribution 309.95 15.07 4.67 4.67 Total: -1.00 -33.88 309.95 -6.75 -40.63 By element: Atomic # 1 Polarization: 1.94 SS G_CDS: -4.19 Total: -2.24 kcal Atomic # 6 Polarization: -6.33 SS G_CDS: -1.73 Total: -8.06 kcal Atomic # 7 Polarization: -26.92 SS G_CDS: 0.74 Total: -26.19 kcal Atomic # 8 Polarization: -23.92 SS G_CDS: -1.21 Total: -25.14 kcal Atomic # 14 Polarization: 21.35 SS G_CDS: -5.02 Total: 16.33 kcal Total LS contribution 4.67 Total: 4.67 kcal Total: -33.88 -6.75 -40.63 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000291073205.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -88.696 kcal (2) G-P(sol) polarization free energy of solvation -33.879 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.576 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.749 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.628 kcal (6) G-S(sol) free energy of system = (1) + (5) -129.325 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds