Wall clock time and date at job start Tue Mar 31 2020 00:22:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86797 * 119.99879 * 2 1 4 4 H 1.48494 * 109.47402 * 270.00418 * 3 2 1 5 5 H 1.48503 * 109.47434 * 30.00658 * 3 2 1 6 6 H 1.48505 * 109.47148 * 150.00082 * 3 2 1 7 7 C 1.37874 * 120.00036 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00007 * 179.97438 * 7 2 1 9 9 C 1.50703 * 119.99725 * 359.97438 * 7 2 1 10 10 C 1.53001 * 109.46839 * 180.02562 * 9 7 2 11 11 C 1.50703 * 109.47216 * 179.97438 * 10 9 7 12 12 O 1.20835 * 119.99558 * 0.02562 * 11 10 9 13 13 O 1.34242 * 120.00094 * 179.97438 * 11 10 9 14 14 C 1.35983 * 116.99821 * 185.77655 * 13 11 10 15 15 C 1.38714 * 120.00097 * 248.72502 * 14 13 11 16 16 C 1.38155 * 120.05297 * 179.83732 * 15 14 13 17 17 C 1.38699 * 120.13973 * 0.51485 * 16 15 14 18 18 C 1.38981 * 119.91096 * 359.64768 * 17 16 15 19 19 C 1.38630 * 120.00408 * 68.99890 * 14 13 11 20 20 O 1.36115 * 120.78728 * 180.25564 * 18 17 16 21 21 C 1.43169 * 116.72411 * 342.80723 * 20 18 17 22 22 C 1.53467 * 108.24798 * 46.18559 * 21 20 18 23 23 O 1.36193 * 119.33405 * 179.55766 * 17 16 15 24 24 H 0.97005 * 119.99885 * 359.97438 * 1 2 3 25 25 H 1.08991 * 109.47091 * 60.00278 * 9 7 2 26 26 H 1.08998 * 109.47263 * 300.00043 * 9 7 2 27 27 H 1.08997 * 109.47789 * 59.99942 * 10 9 7 28 28 H 1.08998 * 109.46911 * 299.99870 * 10 9 7 29 29 H 1.08002 * 119.97523 * 0.05231 * 15 14 13 30 30 H 1.08000 * 119.92601 * 180.27271 * 16 15 14 31 31 H 1.08006 * 119.98338 * 359.94845 * 19 14 13 32 32 H 1.09003 * 109.70756 * 165.88023 * 21 20 18 33 33 H 1.08999 * 109.70488 * 286.49222 * 21 20 18 34 34 H 1.09000 * 109.70975 * 59.92805 * 22 21 20 35 35 H 1.09007 * 109.70962 * 180.55489 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4965 2.0465 -1.4000 5 1 1.4466 2.6527 0.7002 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2509 -2.4991 -0.0005 10 6 2.2452 -3.6620 -0.0005 11 6 1.4917 -4.9672 0.0001 12 8 0.2834 -4.9671 0.0000 13 8 2.1629 -6.1298 -0.0003 14 6 1.4275 -7.2671 -0.1216 15 6 1.3204 -8.1414 0.9499 16 6 0.5708 -9.2956 0.8289 17 6 -0.0679 -9.5890 -0.3668 18 6 0.0408 -8.7163 -1.4429 19 6 0.7895 -7.5558 -1.3181 20 8 -0.5827 -8.9841 -2.6228 21 6 -1.0157 -10.3328 -2.8307 22 6 -1.7251 -10.8114 -1.5567 23 8 -0.7952 -10.7358 -0.4708 24 1 -0.4850 0.8401 0.0004 25 1 0.6240 -2.5566 -0.8902 26 1 0.6246 -2.5570 0.8897 27 1 2.8719 -3.6044 0.8894 28 1 2.8718 -3.6043 -0.8905 29 1 1.8205 -7.9180 1.8807 30 1 0.4851 -9.9726 1.6660 31 1 0.8760 -6.8767 -2.1535 32 1 -1.7066 -10.3714 -3.6729 33 1 -0.1537 -10.9686 -3.0324 34 1 -2.5832 -10.1715 -1.3513 35 1 -2.0568 -11.8418 -1.6857 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000291073205.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:22:20 Heat of formation + Delta-G solvation = -150.409027 kcal Electronic energy + Delta-G solvation = -20749.105172 eV Core-core repulsion = 17291.412849 eV Total energy + Delta-G solvation = -3457.692323 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.103 amu Computer time = 1.55 seconds Orbital eigenvalues (eV) -42.63384 -41.93099 -39.07464 -38.35768 -37.43638 -35.67003 -33.21767 -32.14645 -31.57184 -29.50329 -28.04876 -25.88788 -24.94468 -23.81474 -22.29171 -21.42850 -19.96242 -19.24275 -18.84462 -18.57854 -17.87922 -17.46244 -16.97804 -16.48971 -16.48040 -16.02505 -15.51279 -15.41970 -15.17006 -15.02036 -14.47980 -14.33570 -14.09352 -13.79135 -13.41669 -13.29447 -12.83458 -12.52205 -12.37468 -12.12999 -12.01619 -11.96344 -11.78801 -11.64928 -11.47260 -11.29557 -10.57869 -9.83537 -9.18412 -8.19888 -6.33848 -0.16610 0.07470 1.09178 1.43984 1.46472 1.57055 1.63116 1.90214 2.20952 2.42852 2.56242 3.14151 3.15461 3.54789 3.72023 3.90463 3.92787 4.00023 4.11783 4.22776 4.36402 4.42704 4.48653 4.53692 4.60959 4.75198 4.90083 4.95766 5.07773 5.25067 5.44982 5.53414 5.55174 5.75884 5.80097 6.12237 6.24054 6.77110 6.85563 7.36561 8.92771 Molecular weight = 278.10amu Principal moments of inertia in cm(-1) A = 0.038185 B = 0.003179 C = 0.003062 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 733.089817 B = 8804.824302 C = 9142.072605 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C -0.005 4.005 3 Si 0.975 3.025 4 H -0.272 1.272 5 H -0.286 1.286 6 H -0.255 1.255 7 C -0.543 4.543 8 H 0.080 0.920 9 C 0.038 3.962 10 C -0.090 4.090 11 C 0.461 3.539 12 O -0.526 6.526 13 O -0.287 6.287 14 C 0.067 3.933 15 C -0.112 4.112 16 C -0.093 4.093 17 C 0.046 3.954 18 C 0.057 3.943 19 C -0.143 4.143 20 O -0.327 6.327 21 C 0.011 3.989 22 C 0.013 3.987 23 O -0.311 6.311 24 H 0.264 0.736 25 H -0.011 1.011 26 H -0.008 1.008 27 H 0.124 0.876 28 H 0.121 0.879 29 H 0.166 0.834 30 H 0.176 0.824 31 H 0.125 0.875 32 H 0.154 0.846 33 H 0.088 0.912 34 H 0.076 0.924 35 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.422 -24.579 -2.320 24.729 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.202 4.202 3 Si 0.799 3.201 4 H -0.198 1.198 5 H -0.212 1.212 6 H -0.178 1.178 7 C -0.581 4.581 8 H 0.098 0.902 9 C 0.000 4.000 10 C -0.127 4.127 11 C 0.307 3.693 12 O -0.412 6.412 13 O -0.203 6.203 14 C 0.025 3.975 15 C -0.130 4.130 16 C -0.112 4.112 17 C 0.001 3.999 18 C 0.012 3.988 19 C -0.162 4.162 20 O -0.242 6.242 21 C -0.063 4.063 22 C -0.061 4.061 23 O -0.225 6.225 24 H 0.072 0.928 25 H 0.007 0.993 26 H 0.010 0.990 27 H 0.142 0.858 28 H 0.139 0.861 29 H 0.183 0.817 30 H 0.193 0.807 31 H 0.143 0.857 32 H 0.172 0.828 33 H 0.106 0.894 34 H 0.094 0.906 35 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges 0.850 -24.536 -2.349 24.663 hybrid contribution -0.353 0.990 -0.408 1.127 sum 0.496 -23.547 -2.758 23.713 Atomic orbital electron populations 1.70165 1.08269 1.27939 1.51230 1.26108 0.95723 1.03909 0.94509 0.85300 0.78702 0.77633 0.78499 1.19786 1.21230 1.17825 1.21632 0.94196 0.91112 1.51143 0.90203 1.18823 0.93690 0.91908 0.95556 1.21594 0.99354 0.84874 1.06862 1.25145 0.87501 0.85933 0.70706 1.90669 1.17413 1.87511 1.45638 1.84718 1.39302 1.13052 1.83196 1.18483 0.97664 0.87331 0.94007 1.21182 0.99646 0.94083 0.98128 1.20626 0.97250 0.97423 0.95854 1.19063 0.98096 0.88835 0.93947 1.18571 0.97827 0.96167 0.86243 1.20557 0.98956 0.98023 0.98714 1.86312 1.72513 1.32021 1.33335 1.24076 1.01614 0.80338 1.00251 1.24018 0.90407 1.07058 0.84640 1.86312 1.52160 1.33146 1.50927 0.92766 0.99258 0.99006 0.85809 0.86108 0.81676 0.80681 0.85734 0.82824 0.89366 0.90577 0.81838 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -58.42 13.29 21.45 0.28 -58.14 16 2 C 0.00 -0.27 5.46 84.65 0.46 0.19 16 3 Si 0.97 43.69 29.54 68.60 2.03 45.72 16 4 H -0.27 -11.80 7.11 99.48 0.71 -11.10 16 5 H -0.29 -12.75 7.11 99.48 0.71 -12.05 16 6 H -0.25 -10.58 7.11 99.48 0.71 -9.87 16 7 C -0.54 -30.22 9.11 25.60 0.23 -29.98 16 8 H 0.08 4.03 7.74 -2.91 -0.02 4.00 16 9 C 0.04 2.03 4.26 29.85 0.13 2.16 16 10 C -0.09 -3.61 5.75 29.85 0.17 -3.44 16 11 C 0.46 18.83 7.73 71.24 0.55 19.38 16 12 O -0.53 -25.67 15.39 21.93 0.34 -25.33 16 13 O -0.29 -9.97 10.04 4.09 0.04 -9.93 16 14 C 0.07 2.18 5.27 22.48 0.12 2.30 16 15 C -0.11 -2.89 9.98 22.36 0.22 -2.67 16 16 C -0.09 -2.11 9.96 22.36 0.22 -1.89 16 17 C 0.05 1.16 6.49 22.56 0.15 1.31 16 18 C 0.06 1.68 6.49 22.55 0.15 1.83 16 19 C -0.14 -4.78 9.24 22.47 0.21 -4.57 16 20 O -0.33 -8.53 10.42 -82.64 -0.86 -9.39 16 21 C 0.01 0.16 7.26 72.14 0.52 0.69 16 22 C 0.01 0.17 7.26 72.14 0.52 0.70 16 23 O -0.31 -6.37 10.42 -83.53 -0.87 -7.24 16 24 H 0.26 15.42 8.31 -92.70 -0.77 14.65 16 25 H -0.01 -0.67 8.10 -2.39 -0.02 -0.69 16 26 H -0.01 -0.51 8.10 -2.39 -0.02 -0.53 16 27 H 0.12 4.31 8.14 -2.39 -0.02 4.29 16 28 H 0.12 4.27 8.14 -2.39 -0.02 4.25 16 29 H 0.17 3.38 8.06 -2.91 -0.02 3.36 16 30 H 0.18 2.74 8.06 -2.91 -0.02 2.72 16 31 H 0.12 4.35 8.06 -2.91 -0.02 4.33 16 32 H 0.15 1.14 8.14 -2.39 -0.02 1.12 16 33 H 0.09 1.08 8.14 -2.39 -0.02 1.06 16 34 H 0.08 1.07 8.14 -2.39 -0.02 1.05 16 35 H 0.16 0.74 8.14 -2.38 -0.02 0.72 16 Total: -1.00 -76.73 309.95 5.72 -71.01 By element: Atomic # 1 Polarization: 6.20 SS G_CDS: 1.10 Total: 7.31 kcal Atomic # 6 Polarization: -17.66 SS G_CDS: 3.66 Total: -14.00 kcal Atomic # 7 Polarization: -58.42 SS G_CDS: 0.28 Total: -58.14 kcal Atomic # 8 Polarization: -50.54 SS G_CDS: -1.35 Total: -51.90 kcal Atomic # 14 Polarization: 43.69 SS G_CDS: 2.03 Total: 45.72 kcal Total: -76.73 5.72 -71.01 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000291073205.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -79.395 kcal (2) G-P(sol) polarization free energy of solvation -76.732 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -156.127 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.718 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.014 kcal (6) G-S(sol) free energy of system = (1) + (5) -150.409 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.55 seconds