Wall clock time and date at job start Tue Mar 31 2020 00:32:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86795 * 119.99774 * 2 1 4 4 H 1.48500 * 109.47405 * 270.00238 * 3 2 1 5 5 H 1.48499 * 109.47242 * 30.00581 * 3 2 1 6 6 H 1.48506 * 109.47140 * 150.00343 * 3 2 1 7 7 C 1.37875 * 119.99750 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00378 * 0.02562 * 7 2 1 9 9 C 1.50707 * 119.99793 * 179.97438 * 7 2 1 10 10 C 1.52995 * 109.47118 * 180.02562 * 9 7 2 11 11 C 1.50698 * 109.47120 * 180.02562 * 10 9 7 12 12 N 1.30971 * 126.42865 * 90.31683 * 11 10 9 13 13 C 1.35254 * 105.57708 * 180.12159 * 12 11 10 14 14 C 1.48284 * 126.42140 * 179.84630 * 13 12 11 15 15 C 1.39428 * 120.07995 * 179.71565 * 14 13 12 16 16 C 1.37827 * 119.95722 * 179.97438 * 15 14 13 17 17 C 1.38915 * 120.12594 * 0.02562 * 16 15 14 18 18 O 1.35825 * 119.92195 * 179.97438 * 17 16 15 19 19 C 1.38775 * 120.15883 * 359.97438 * 17 16 15 20 20 C 1.38151 * 120.04090 * 359.97438 * 19 17 16 21 21 F 1.35093 * 120.06232 * 179.97438 * 20 19 17 22 22 N 1.30835 * 107.15693 * 359.58848 * 13 12 11 23 23 O 1.21283 * 110.07965 * 0.25598 * 22 13 12 24 24 H 0.96996 * 119.99813 * 359.97438 * 1 2 3 25 25 H 1.09000 * 109.46701 * 59.99793 * 9 7 2 26 26 H 1.09004 * 109.46774 * 300.00425 * 9 7 2 27 27 H 1.08994 * 109.47154 * 59.99765 * 10 9 7 28 28 H 1.09006 * 109.46681 * 299.99865 * 10 9 7 29 29 H 1.08002 * 120.01801 * 359.95550 * 15 14 13 30 30 H 1.08007 * 119.93442 * 179.97438 * 16 15 14 31 31 H 0.96703 * 114.00640 * 270.02007 * 18 17 16 32 32 H 1.08007 * 119.97683 * 179.72942 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4466 2.6526 0.7001 6 1 3.5468 1.4402 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 1.4646 -2.1294 -0.0014 9 6 3.5116 -1.1941 -0.0011 10 6 4.0216 -2.6365 -0.0023 11 6 5.5285 -2.6365 -0.0022 12 7 6.3062 -2.6432 1.0516 13 6 7.5702 -2.6374 0.5702 14 6 8.8176 -2.6382 1.3719 15 6 10.0578 -2.6376 0.7348 16 6 11.2157 -2.6378 1.4825 17 6 11.1496 -2.6391 2.8701 18 8 12.2932 -2.6398 3.6028 19 6 9.9179 -2.6397 3.5094 20 6 8.7531 -2.6384 2.7666 21 9 7.5538 -2.6395 3.3885 22 7 7.4860 -2.6366 -0.7354 23 8 6.3224 -2.6362 -1.0776 24 1 -0.4850 0.8400 0.0004 25 1 3.8752 -0.6804 0.8888 26 1 3.8745 -0.6799 -0.8911 27 1 3.6579 -3.1497 -0.8924 28 1 3.6585 -3.1509 0.8876 29 1 10.1111 -2.6374 -0.3439 30 1 12.1762 -2.6378 0.9886 31 1 12.6246 -3.5234 3.8140 32 1 9.8699 -2.6451 4.5884 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000291097765.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:32:38 Heat of formation + Delta-G solvation = 1.018844 kcal Electronic energy + Delta-G solvation = -20262.404760 eV Core-core repulsion = 16720.111288 eV Total energy + Delta-G solvation = -3542.293472 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 278.085 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -48.97180 -45.28670 -40.00807 -37.29300 -35.64068 -34.54385 -32.64419 -31.28303 -30.73734 -29.80268 -26.27599 -24.61712 -23.68783 -22.56287 -21.69489 -20.52104 -19.09969 -17.93353 -17.70889 -17.04683 -16.82307 -16.42672 -16.15025 -15.71563 -15.07111 -14.44782 -14.24168 -14.08293 -14.02961 -13.54354 -12.84625 -12.76109 -12.65787 -12.35537 -11.99031 -11.89314 -11.49531 -11.21503 -11.10228 -10.85117 -10.68445 -10.22772 -9.90395 -9.73924 -9.37912 -9.31560 -8.71281 -8.63146 -6.13929 -4.14600 0.27106 0.76248 1.48473 2.40175 3.11047 3.19789 3.27078 3.35206 3.39419 3.41845 3.58254 3.93679 4.12078 4.38065 4.44843 4.64129 4.88347 5.05042 5.20005 5.21673 5.54469 5.61136 5.72549 5.79721 5.86098 5.94997 6.01521 6.16621 6.30980 6.42515 7.00549 7.10852 7.14239 7.60673 8.32488 8.37749 8.88050 9.46754 10.98665 Molecular weight = 278.09amu Principal moments of inertia in cm(-1) A = 0.028647 B = 0.003752 C = 0.003609 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 977.183362 B = 7461.498052 C = 7755.906837 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.073 3.927 3 Si 0.876 3.124 4 H -0.275 1.275 5 H -0.285 1.285 6 H -0.266 1.266 7 C -0.525 4.525 8 H 0.079 0.921 9 C -0.008 4.008 10 C -0.020 4.020 11 C 0.215 3.785 12 N -0.478 5.478 13 C 0.199 3.801 14 C -0.059 4.059 15 C -0.040 4.040 16 C -0.160 4.160 17 C 0.151 3.849 18 O -0.493 6.493 19 C -0.189 4.189 20 C 0.163 3.837 21 F -0.107 7.107 22 N -0.384 5.384 23 O 0.077 5.923 24 H 0.266 0.734 25 H 0.027 0.973 26 H 0.019 0.981 27 H 0.099 0.901 28 H 0.108 0.892 29 H 0.146 0.854 30 H 0.143 0.857 31 H 0.397 0.603 32 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.051 -7.805 4.070 24.675 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.129 4.129 3 Si 0.703 3.297 4 H -0.201 1.201 5 H -0.211 1.211 6 H -0.190 1.190 7 C -0.563 4.563 8 H 0.097 0.903 9 C -0.047 4.047 10 C -0.059 4.059 11 C -0.004 4.004 12 N -0.210 5.210 13 C -0.071 4.071 14 C -0.061 4.061 15 C -0.060 4.060 16 C -0.178 4.178 17 C 0.105 3.895 18 O -0.304 6.304 19 C -0.208 4.208 20 C 0.141 3.859 21 F -0.085 7.085 22 N -0.093 5.093 23 O 0.018 5.982 24 H 0.075 0.925 25 H 0.045 0.955 26 H 0.038 0.962 27 H 0.117 0.883 28 H 0.126 0.874 29 H 0.164 0.836 30 H 0.161 0.839 31 H 0.254 0.746 32 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges 23.547 -7.096 3.963 24.910 hybrid contribution 0.063 0.508 0.131 0.529 sum 23.610 -6.588 4.094 24.852 Atomic orbital electron populations 1.69890 1.06229 1.27165 1.50188 1.24939 0.94719 0.99087 0.94182 0.86837 0.80461 0.83724 0.78705 1.20055 1.21091 1.19040 1.20917 0.88285 0.94976 1.52137 0.90319 1.19634 0.97974 0.89493 0.97558 1.20590 0.76735 1.03144 1.05408 1.29686 0.99515 0.91879 0.79345 1.72206 0.98959 1.21358 1.28496 1.23551 0.92833 1.02756 0.87956 1.17462 0.89688 1.08754 0.90228 1.20953 0.89437 0.94658 1.00978 1.21361 0.99287 1.04304 0.92898 1.18229 0.85121 0.96784 0.89328 1.84799 1.38676 1.33929 1.73008 1.21333 0.90507 1.07255 1.01732 1.17369 0.81436 0.98228 0.88878 1.91650 1.42206 1.92624 1.82006 1.74814 0.98282 1.21753 1.14425 1.85260 1.11059 1.65684 1.36245 0.92463 0.95504 0.96238 0.88283 0.87414 0.83643 0.83947 0.74554 0.83303 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.81 13.96 55.43 0.77 -26.04 16 2 C 0.07 2.07 5.47 -17.82 -0.10 1.97 16 3 Si 0.88 21.39 27.47 -169.99 -4.67 16.72 16 4 H -0.27 -6.58 7.11 56.52 0.40 -6.17 16 5 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 6 H -0.27 -6.39 6.54 56.52 0.37 -6.02 16 7 C -0.53 -14.17 9.66 -34.44 -0.33 -14.50 16 8 H 0.08 2.22 7.99 -52.49 -0.42 1.80 16 9 C -0.01 -0.18 4.02 -27.88 -0.11 -0.30 16 10 C -0.02 -0.36 5.78 -27.89 -0.16 -0.52 16 11 C 0.22 3.90 7.75 -12.98 -0.10 3.80 16 12 N -0.48 -9.04 10.24 -9.88 -0.10 -9.14 16 13 C 0.20 3.42 7.78 -156.09 -1.21 2.20 16 14 C -0.06 -0.83 5.88 -104.81 -0.62 -1.44 16 15 C -0.04 -0.44 9.68 -39.29 -0.38 -0.82 16 16 C -0.16 -1.37 9.97 -39.48 -0.39 -1.76 16 17 C 0.15 1.33 6.70 -39.13 -0.26 1.07 16 18 O -0.49 -3.41 13.49 -19.19 -0.26 -3.67 16 19 C -0.19 -1.93 9.95 -39.41 -0.39 -2.32 16 20 C 0.16 2.18 7.27 -39.10 -0.28 1.90 16 21 F -0.11 -1.70 15.79 2.25 0.04 -1.66 16 22 N -0.38 -6.60 11.86 30.98 0.37 -6.23 16 23 O 0.08 1.36 11.29 18.04 0.20 1.56 16 24 H 0.27 7.45 8.31 -40.82 -0.34 7.11 16 25 H 0.03 0.64 7.20 -51.93 -0.37 0.26 16 26 H 0.02 0.44 7.57 -51.93 -0.39 0.04 16 27 H 0.10 1.61 8.14 -51.93 -0.42 1.19 16 28 H 0.11 1.90 8.14 -51.93 -0.42 1.48 16 29 H 0.15 1.45 7.86 -52.49 -0.41 1.03 16 30 H 0.14 0.86 8.06 -52.48 -0.42 0.44 16 31 H 0.40 0.68 9.06 45.56 0.41 1.09 16 32 H 0.15 1.25 8.06 -52.48 -0.42 0.83 16 LS Contribution 295.18 15.07 4.45 4.45 Total: -1.00 -32.55 295.18 -5.59 -38.15 By element: Atomic # 1 Polarization: -1.37 SS G_CDS: -2.04 Total: -3.42 kcal Atomic # 6 Polarization: -6.37 SS G_CDS: -4.35 Total: -10.72 kcal Atomic # 7 Polarization: -42.45 SS G_CDS: 1.04 Total: -41.41 kcal Atomic # 8 Polarization: -2.05 SS G_CDS: -0.06 Total: -2.11 kcal Atomic # 9 Polarization: -1.70 SS G_CDS: 0.04 Total: -1.66 kcal Atomic # 14 Polarization: 21.39 SS G_CDS: -4.67 Total: 16.72 kcal Total LS contribution 4.45 Total: 4.45 kcal Total: -32.55 -5.59 -38.15 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000291097765.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.166 kcal (2) G-P(sol) polarization free energy of solvation -32.554 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.612 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.593 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.147 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.019 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds