Wall clock time and date at job start Tue Mar 31 2020 00:32:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86795 * 119.99774 * 2 1 4 4 H 1.48500 * 109.47405 * 270.00238 * 3 2 1 5 5 H 1.48499 * 109.47242 * 30.00581 * 3 2 1 6 6 H 1.48506 * 109.47140 * 150.00343 * 3 2 1 7 7 C 1.37875 * 119.99750 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00378 * 0.02562 * 7 2 1 9 9 C 1.50707 * 119.99793 * 179.97438 * 7 2 1 10 10 C 1.52995 * 109.47118 * 180.02562 * 9 7 2 11 11 C 1.50698 * 109.47120 * 180.02562 * 10 9 7 12 12 N 1.30971 * 126.42865 * 90.31683 * 11 10 9 13 13 C 1.35254 * 105.57708 * 180.12159 * 12 11 10 14 14 C 1.48284 * 126.42140 * 179.84630 * 13 12 11 15 15 C 1.39428 * 120.07995 * 179.71565 * 14 13 12 16 16 C 1.37827 * 119.95722 * 179.97438 * 15 14 13 17 17 C 1.38915 * 120.12594 * 0.02562 * 16 15 14 18 18 O 1.35825 * 119.92195 * 179.97438 * 17 16 15 19 19 C 1.38775 * 120.15883 * 359.97438 * 17 16 15 20 20 C 1.38151 * 120.04090 * 359.97438 * 19 17 16 21 21 F 1.35093 * 120.06232 * 179.97438 * 20 19 17 22 22 N 1.30835 * 107.15693 * 359.58848 * 13 12 11 23 23 O 1.21283 * 110.07965 * 0.25598 * 22 13 12 24 24 H 0.96996 * 119.99813 * 359.97438 * 1 2 3 25 25 H 1.09000 * 109.46701 * 59.99793 * 9 7 2 26 26 H 1.09004 * 109.46774 * 300.00425 * 9 7 2 27 27 H 1.08994 * 109.47154 * 59.99765 * 10 9 7 28 28 H 1.09006 * 109.46681 * 299.99865 * 10 9 7 29 29 H 1.08002 * 120.01801 * 359.95550 * 15 14 13 30 30 H 1.08007 * 119.93442 * 179.97438 * 16 15 14 31 31 H 0.96703 * 114.00640 * 270.02007 * 18 17 16 32 32 H 1.08007 * 119.97683 * 179.72942 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4466 2.6526 0.7001 6 1 3.5468 1.4402 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 1.4646 -2.1294 -0.0014 9 6 3.5116 -1.1941 -0.0011 10 6 4.0216 -2.6365 -0.0023 11 6 5.5285 -2.6365 -0.0022 12 7 6.3062 -2.6432 1.0516 13 6 7.5702 -2.6374 0.5702 14 6 8.8176 -2.6382 1.3719 15 6 10.0578 -2.6376 0.7348 16 6 11.2157 -2.6378 1.4825 17 6 11.1496 -2.6391 2.8701 18 8 12.2932 -2.6398 3.6028 19 6 9.9179 -2.6397 3.5094 20 6 8.7531 -2.6384 2.7666 21 9 7.5538 -2.6395 3.3885 22 7 7.4860 -2.6366 -0.7354 23 8 6.3224 -2.6362 -1.0776 24 1 -0.4850 0.8400 0.0004 25 1 3.8752 -0.6804 0.8888 26 1 3.8745 -0.6799 -0.8911 27 1 3.6579 -3.1497 -0.8924 28 1 3.6585 -3.1509 0.8876 29 1 10.1111 -2.6374 -0.3439 30 1 12.1762 -2.6378 0.9886 31 1 12.6246 -3.5234 3.8140 32 1 9.8699 -2.6451 4.5884 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000291097765.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:32:37 Heat of formation + Delta-G solvation = -22.378776 kcal Electronic energy + Delta-G solvation = -20263.419357 eV Core-core repulsion = 16720.111288 eV Total energy + Delta-G solvation = -3543.308069 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 278.085 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -50.02689 -46.62376 -40.74941 -38.07339 -37.01295 -36.09561 -34.44858 -32.58611 -31.83212 -30.83335 -28.07172 -25.71270 -24.83566 -23.60801 -23.17901 -21.94731 -19.81939 -19.38484 -19.07096 -18.65941 -17.85578 -17.27820 -17.24213 -16.74926 -16.38175 -15.83352 -15.74395 -15.26001 -14.97979 -14.83554 -14.72675 -13.81227 -13.74860 -13.69991 -13.51876 -12.96447 -12.90732 -12.79163 -12.38205 -12.17601 -11.98216 -11.82338 -11.79997 -11.47158 -11.16367 -10.78217 -10.14060 -9.65430 -8.30790 -6.35082 -0.66761 -0.03316 0.17471 1.21704 1.34061 1.37122 1.46733 1.71931 2.32194 2.33335 2.33726 2.71826 2.85420 3.04797 3.25781 3.61509 3.83138 3.92848 4.09653 4.28814 4.36605 4.41793 4.52830 4.67372 4.81963 4.82961 4.91741 5.03800 5.10476 5.21855 5.33389 5.51388 5.56183 6.21999 6.72334 6.73732 6.97529 7.29474 8.84959 Molecular weight = 278.09amu Principal moments of inertia in cm(-1) A = 0.028647 B = 0.003752 C = 0.003609 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 977.183362 B = 7461.498052 C = 7755.906837 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.942 5.942 2 C 0.016 3.984 3 Si 0.937 3.063 4 H -0.263 1.263 5 H -0.282 1.282 6 H -0.260 1.260 7 C -0.527 4.527 8 H 0.054 0.946 9 C -0.004 4.004 10 C -0.009 4.009 11 C 0.214 3.786 12 N -0.500 5.500 13 C 0.199 3.801 14 C -0.094 4.094 15 C -0.036 4.036 16 C -0.146 4.146 17 C 0.172 3.828 18 O -0.495 6.495 19 C -0.186 4.186 20 C 0.139 3.861 21 F -0.131 7.131 22 N -0.389 5.389 23 O 0.074 5.926 24 H 0.268 0.732 25 H 0.016 0.984 26 H 0.026 0.974 27 H 0.120 0.880 28 H 0.111 0.889 29 H 0.153 0.847 30 H 0.177 0.823 31 H 0.423 0.577 32 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 26.530 -7.622 4.270 27.931 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.183 4.183 3 Si 0.761 3.239 4 H -0.188 1.188 5 H -0.208 1.208 6 H -0.184 1.184 7 C -0.565 4.565 8 H 0.072 0.928 9 C -0.043 4.043 10 C -0.048 4.048 11 C -0.006 4.006 12 N -0.233 5.233 13 C -0.070 4.070 14 C -0.096 4.096 15 C -0.056 4.056 16 C -0.164 4.164 17 C 0.126 3.874 18 O -0.310 6.310 19 C -0.206 4.206 20 C 0.118 3.882 21 F -0.109 7.109 22 N -0.099 5.099 23 O 0.016 5.984 24 H 0.077 0.923 25 H 0.035 0.965 26 H 0.044 0.956 27 H 0.138 0.862 28 H 0.129 0.871 29 H 0.170 0.830 30 H 0.194 0.806 31 H 0.286 0.714 32 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges 27.046 -6.945 4.154 28.231 hybrid contribution -0.844 0.358 0.151 0.929 sum 26.202 -6.587 4.306 27.359 Atomic orbital electron populations 1.70017 1.07908 1.28187 1.52126 1.25781 0.95456 1.02813 0.94202 0.85856 0.79226 0.79512 0.79278 1.18820 1.20777 1.18430 1.21240 0.90535 0.94006 1.50698 0.92759 1.19485 0.95191 0.92399 0.97185 1.20363 0.77075 1.00589 1.06752 1.29453 0.99269 0.92263 0.79610 1.72208 1.00087 1.21924 1.29117 1.24111 0.93376 1.01424 0.88118 1.17693 0.89586 1.11937 0.90429 1.21094 0.88939 0.94078 1.01506 1.21678 0.99745 1.02197 0.92760 1.18245 0.85188 0.94402 0.89561 1.84750 1.37438 1.36226 1.72572 1.21512 0.90018 1.06575 1.02450 1.17683 0.81574 0.99972 0.89021 1.91582 1.43806 1.93126 1.82370 1.74784 0.97921 1.22649 1.14516 1.85239 1.11234 1.65894 1.35995 0.92305 0.96518 0.95588 0.86196 0.87055 0.82963 0.80612 0.71435 0.81759 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.43 13.96 21.45 0.30 -57.13 16 2 C 0.02 0.89 5.47 84.65 0.46 1.35 16 3 Si 0.94 44.08 27.47 68.60 1.88 45.96 16 4 H -0.26 -11.83 7.11 99.48 0.71 -11.12 16 5 H -0.28 -13.04 7.11 99.48 0.71 -12.34 16 6 H -0.26 -11.89 6.54 99.48 0.65 -11.24 16 7 C -0.53 -28.77 9.66 25.60 0.25 -28.52 16 8 H 0.05 3.15 7.99 -2.91 -0.02 3.13 16 9 C 0.00 -0.18 4.02 29.85 0.12 -0.06 16 10 C -0.01 -0.33 5.78 29.85 0.17 -0.15 16 11 C 0.21 7.71 7.75 88.35 0.68 8.40 16 12 N -0.50 -19.03 10.24 -302.44 -3.10 -22.13 16 13 C 0.20 6.82 7.78 137.22 1.07 7.89 16 14 C -0.09 -2.57 5.88 -19.99 -0.12 -2.68 16 15 C -0.04 -0.71 9.68 22.46 0.22 -0.49 16 16 C -0.15 -1.94 9.97 22.33 0.22 -1.72 16 17 C 0.17 2.40 6.70 22.56 0.15 2.55 16 18 O -0.49 -4.60 13.49 -91.59 -1.24 -5.83 16 19 C -0.19 -3.41 9.95 22.38 0.22 -3.19 16 20 C 0.14 3.65 7.27 22.58 0.16 3.82 16 21 F -0.13 -4.22 15.79 44.97 0.71 -3.51 16 22 N -0.39 -13.16 11.86 -59.04 -0.70 -13.86 16 23 O 0.07 2.56 11.29 74.63 0.84 3.40 16 24 H 0.27 15.29 8.31 -92.71 -0.77 14.52 16 25 H 0.02 0.78 7.20 -2.39 -0.02 0.77 16 26 H 0.03 1.14 7.57 -2.38 -0.02 1.12 16 27 H 0.12 3.81 8.14 -2.39 -0.02 3.79 16 28 H 0.11 3.95 8.14 -2.38 -0.02 3.93 16 29 H 0.15 2.70 7.86 -2.91 -0.02 2.68 16 30 H 0.18 1.20 8.06 -2.91 -0.02 1.17 16 31 H 0.42 -0.59 9.06 -74.06 -0.67 -1.26 16 32 H 0.16 2.39 8.06 -2.91 -0.02 2.37 16 Total: -1.00 -71.16 295.18 2.78 -68.38 By element: Atomic # 1 Polarization: -2.94 SS G_CDS: 0.46 Total: -2.49 kcal Atomic # 6 Polarization: -16.42 SS G_CDS: 3.62 Total: -12.81 kcal Atomic # 7 Polarization: -89.61 SS G_CDS: -3.50 Total: -93.11 kcal Atomic # 8 Polarization: -2.04 SS G_CDS: -0.39 Total: -2.43 kcal Atomic # 9 Polarization: -4.22 SS G_CDS: 0.71 Total: -3.51 kcal Atomic # 14 Polarization: 44.08 SS G_CDS: 1.88 Total: 45.96 kcal Total: -71.16 2.78 -68.38 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000291097765.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.005 kcal (2) G-P(sol) polarization free energy of solvation -71.159 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.154 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.775 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.384 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.379 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds