Wall clock time and date at job start Tue Mar 31 2020 00:43:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31632 * 1 3 3 Si 1.86794 * 119.99979 * 2 1 4 4 H 1.48497 * 109.47112 * 180.02562 * 3 2 1 5 5 H 1.48498 * 109.47343 * 300.00340 * 3 2 1 6 6 H 1.48501 * 109.47054 * 60.00283 * 3 2 1 7 7 C 1.38803 * 119.99706 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99692 * 179.97438 * 7 2 1 9 9 S 1.76201 * 120.00039 * 0.02562 * 7 2 1 10 10 C 1.81000 * 99.99743 * 179.97438 * 9 7 2 11 11 C 1.50697 * 109.47294 * 180.02562 * 10 9 7 12 12 O 1.21280 * 119.99741 * 359.97438 * 11 10 9 13 13 N 1.34778 * 120.00510 * 180.02562 * 11 10 9 14 14 C 1.39401 * 120.00100 * 185.08395 * 13 11 10 15 15 C 1.39036 * 119.69405 * 174.92543 * 14 13 11 16 16 C 1.38369 * 119.10041 * 179.72564 * 15 14 13 17 17 C 1.50695 * 120.75218 * 180.28258 * 16 15 14 18 18 C 1.53001 * 117.49844 * 188.88099 * 17 16 15 19 19 C 1.52994 * 117.49992 * 120.25983 * 17 16 15 20 20 C 1.38838 * 118.49268 * 0.53479 * 16 15 14 21 21 C 1.38073 * 119.30766 * 359.72685 * 20 16 15 22 22 N 1.31927 * 120.85466 * 0.02562 * 21 20 16 23 23 H 0.97003 * 120.00097 * 359.97438 * 1 2 3 24 24 H 1.09000 * 109.46969 * 60.00310 * 10 9 7 25 25 H 1.08995 * 109.47248 * 300.00013 * 10 9 7 26 26 H 0.97001 * 119.99721 * 5.34934 * 13 11 10 27 27 H 1.08002 * 120.45118 * 359.97438 * 15 14 13 28 28 H 1.09006 * 115.55359 * 334.58661 * 17 16 15 29 29 H 1.09001 * 117.49773 * 359.97438 * 18 17 16 30 30 H 1.09000 * 117.50222 * 145.01654 * 18 17 16 31 31 H 1.09001 * 117.50022 * 214.97615 * 19 17 16 32 32 H 1.09006 * 117.49723 * 359.97438 * 19 17 16 33 33 H 1.07997 * 120.34517 * 179.74747 * 20 16 15 34 34 H 1.08007 * 119.57054 * 180.02562 * 21 20 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.7103 1.3463 -0.0006 5 1 1.8915 2.3965 -1.2124 6 1 1.8916 2.3964 1.2125 7 6 2.0103 -1.2021 -0.0005 8 1 3.0902 -1.2021 -0.0010 9 16 1.1292 -2.7280 -0.0019 10 6 2.5157 -3.8914 -0.0029 11 6 1.9873 -5.3027 -0.0048 12 8 0.7911 -5.5023 -0.0050 13 7 2.8440 -6.3432 -0.0054 14 6 2.3589 -7.6455 -0.1141 15 6 3.2513 -8.7063 -0.2206 16 6 2.7564 -9.9945 -0.3221 17 6 3.6901 -11.1721 -0.4329 18 6 3.0728 -12.5358 -0.7494 19 6 3.6063 -12.2449 0.6547 20 6 1.3801 -10.1769 -0.3249 21 6 0.5523 -9.0768 -0.2214 22 7 1.0529 -7.8603 -0.1209 23 1 -0.4850 0.8401 0.0004 24 1 3.1243 -3.7322 0.8872 25 1 3.1243 -3.7306 -0.8927 26 1 3.7980 -6.1860 0.0738 27 1 4.3165 -8.5277 -0.2200 28 1 4.6731 -10.9551 -0.8510 29 1 1.9912 -12.5812 -0.8771 30 1 3.6494 -13.2162 -1.3760 31 1 4.5340 -12.7340 0.9519 32 1 2.8760 -12.0987 1.4506 33 1 0.9614 -11.1691 -0.4069 34 1 -0.5191 -9.2138 -0.2228 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000291246769.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:43:14 Heat of formation + Delta-G solvation = 36.925724 kcal Electronic energy + Delta-G solvation = -17849.134434 eV Core-core repulsion = 14874.611178 eV Total energy + Delta-G solvation = -2974.523257 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 278.083 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.78367 -39.00913 -37.36098 -34.58419 -32.43860 -32.02586 -30.64324 -28.63996 -25.52045 -24.80791 -23.52574 -22.65339 -21.57932 -19.88973 -18.09023 -17.50825 -16.75760 -16.45515 -15.69677 -15.36689 -15.18619 -14.81438 -14.48959 -14.08203 -13.89006 -13.83100 -13.26963 -12.67959 -12.48063 -12.19106 -11.98651 -11.76651 -11.36483 -11.07632 -11.03160 -10.83372 -10.76946 -10.51375 -9.88990 -9.82543 -9.38080 -9.08274 -8.85411 -8.25364 -8.23501 -6.51716 -6.22679 -3.93613 1.10211 1.19706 2.81107 3.03288 3.21316 3.24822 3.30584 3.45695 3.55038 3.97985 4.13402 4.18756 4.45446 4.52620 4.58128 4.70302 4.94976 4.97813 5.12557 5.12659 5.22074 5.30713 5.43395 5.60279 5.61696 5.65761 5.71231 5.83128 5.86233 6.08267 6.16824 6.33850 6.81325 7.29998 7.59026 8.15214 8.34352 8.57668 9.22640 10.84790 Molecular weight = 278.08amu Principal moments of inertia in cm(-1) A = 0.059436 B = 0.002920 C = 0.002807 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 470.984750 B = 9586.365529 C = 9973.957144 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.867 5.867 2 C 0.073 3.927 3 Si 0.920 3.080 4 H -0.272 1.272 5 H -0.280 1.280 6 H -0.280 1.280 7 C -0.535 4.535 8 H 0.074 0.926 9 S -0.056 6.056 10 C -0.153 4.153 11 C 0.518 3.482 12 O -0.445 6.445 13 N -0.667 5.667 14 C 0.376 3.624 15 C -0.211 4.211 16 C 0.016 3.984 17 C -0.122 4.122 18 C -0.173 4.173 19 C -0.165 4.165 20 C -0.217 4.217 21 C 0.140 3.860 22 N -0.478 5.478 23 H 0.268 0.732 24 H 0.092 0.908 25 H 0.093 0.907 26 H 0.415 0.585 27 H 0.133 0.867 28 H 0.116 0.884 29 H 0.101 0.899 30 H 0.099 0.901 31 H 0.099 0.901 32 H 0.098 0.902 33 H 0.132 0.868 34 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.566 -23.202 -0.426 25.100 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.502 5.502 2 C -0.136 4.136 3 Si 0.746 3.254 4 H -0.196 1.196 5 H -0.206 1.206 6 H -0.206 1.206 7 C -0.684 4.684 8 H 0.092 0.908 9 S 0.170 5.830 10 C -0.303 4.303 11 C 0.303 3.697 12 O -0.311 6.311 13 N -0.314 5.314 14 C 0.144 3.856 15 C -0.234 4.234 16 C 0.008 3.992 17 C -0.140 4.140 18 C -0.210 4.210 19 C -0.202 4.202 20 C -0.239 4.239 21 C -0.019 4.019 22 N -0.193 5.193 23 H 0.078 0.922 24 H 0.110 0.890 25 H 0.111 0.889 26 H 0.251 0.749 27 H 0.151 0.849 28 H 0.134 0.866 29 H 0.119 0.881 30 H 0.117 0.883 31 H 0.118 0.882 32 H 0.116 0.884 33 H 0.149 0.851 34 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges 6.820 -22.550 -0.370 23.562 hybrid contribution 3.091 0.680 -0.052 3.165 sum 9.910 -21.871 -0.421 24.015 Atomic orbital electron populations 1.70029 1.05957 1.27397 1.46824 1.25005 0.95043 0.99075 0.94520 0.86098 0.79552 0.81819 0.77909 1.19616 1.20558 1.20552 1.22899 0.94952 0.91549 1.58973 0.90806 1.85461 1.04510 0.96296 1.96723 1.23559 1.06925 0.94674 1.05181 1.20619 0.86882 0.85931 0.76273 1.90814 1.14490 1.84492 1.41312 1.43870 1.11377 1.03263 1.72889 1.18538 0.89422 0.85069 0.92576 1.21193 1.00178 0.91716 1.10351 1.19185 0.93266 0.92691 0.94020 1.21013 0.99564 0.88032 1.05366 1.23077 1.01558 0.97444 0.98882 1.23032 1.03494 1.01234 0.92484 1.21867 0.93463 1.00634 1.07934 1.22679 1.00429 0.86427 0.92331 1.67756 1.12003 1.24316 1.15214 0.92196 0.88951 0.88912 0.74869 0.84875 0.86571 0.88084 0.88257 0.88250 0.88366 0.85068 0.82488 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -26.21 13.22 55.49 0.73 -25.47 16 2 C 0.07 2.08 5.49 -17.43 -0.10 1.99 16 3 Si 0.92 21.40 29.55 -169.99 -5.02 16.38 16 4 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 5 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 6 H -0.28 -6.41 7.11 56.52 0.40 -6.00 16 7 C -0.54 -15.22 9.50 30.94 0.29 -14.93 16 8 H 0.07 1.98 7.80 -52.49 -0.41 1.57 16 9 S -0.06 -1.54 20.57 -107.50 -2.21 -3.75 16 10 C -0.15 -3.07 6.16 36.00 0.22 -2.85 16 11 C 0.52 10.08 7.81 -10.99 -0.09 9.99 16 12 O -0.45 -10.57 14.13 5.56 0.08 -10.49 16 13 N -0.67 -9.78 5.39 -11.43 -0.06 -9.84 16 14 C 0.38 5.62 7.42 -154.71 -1.15 4.47 16 15 C -0.21 -2.38 9.67 -39.24 -0.38 -2.76 16 16 C 0.02 0.17 5.64 -104.35 -0.59 -0.42 16 17 C -0.12 -0.91 6.08 -91.78 -0.56 -1.47 16 18 C -0.17 -1.05 9.88 -26.73 -0.26 -1.32 16 19 C -0.17 -1.04 10.18 -26.74 -0.27 -1.31 16 20 C -0.22 -2.27 9.38 -39.42 -0.37 -2.64 16 21 C 0.14 1.84 11.17 -17.57 -0.20 1.64 16 22 N -0.48 -8.20 7.89 -12.37 -0.10 -8.30 16 23 H 0.27 7.51 8.31 -40.82 -0.34 7.17 16 24 H 0.09 1.68 8.14 -51.92 -0.42 1.25 16 25 H 0.09 1.70 8.14 -51.92 -0.42 1.28 16 26 H 0.41 4.28 8.70 -40.82 -0.36 3.92 16 27 H 0.13 1.12 8.06 -52.49 -0.42 0.70 16 28 H 0.12 0.75 8.14 -51.93 -0.42 0.33 16 29 H 0.10 0.59 6.25 -51.93 -0.32 0.27 16 30 H 0.10 0.49 8.14 -51.93 -0.42 0.06 16 31 H 0.10 0.50 8.14 -51.93 -0.42 0.07 16 32 H 0.10 0.66 8.14 -51.93 -0.42 0.24 16 33 H 0.13 1.02 6.16 -52.49 -0.32 0.70 16 34 H 0.16 1.70 8.06 -52.48 -0.42 1.28 16 LS Contribution 312.64 15.07 4.71 4.71 Total: -1.00 -36.01 312.64 -9.24 -45.25 By element: Atomic # 1 Polarization: 5.05 SS G_CDS: -3.93 Total: 1.12 kcal Atomic # 6 Polarization: -6.16 SS G_CDS: -3.44 Total: -9.60 kcal Atomic # 7 Polarization: -44.19 SS G_CDS: 0.57 Total: -43.62 kcal Atomic # 8 Polarization: -10.57 SS G_CDS: 0.08 Total: -10.49 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -5.02 Total: 16.38 kcal Atomic # 16 Polarization: -1.54 SS G_CDS: -2.21 Total: -3.75 kcal Total LS contribution 4.71 Total: 4.71 kcal Total: -36.01 -9.24 -45.25 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000291246769.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.174 kcal (2) G-P(sol) polarization free energy of solvation -36.007 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.168 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.242 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.249 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.926 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds