Wall clock time and date at job start Tue Mar 31 2020 00:43:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31632 * 1 3 3 Si 1.86794 * 119.99979 * 2 1 4 4 H 1.48497 * 109.47112 * 180.02562 * 3 2 1 5 5 H 1.48498 * 109.47343 * 300.00340 * 3 2 1 6 6 H 1.48501 * 109.47054 * 60.00283 * 3 2 1 7 7 C 1.38803 * 119.99706 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99692 * 179.97438 * 7 2 1 9 9 S 1.76201 * 120.00039 * 0.02562 * 7 2 1 10 10 C 1.81000 * 99.99743 * 179.97438 * 9 7 2 11 11 C 1.50697 * 109.47294 * 180.02562 * 10 9 7 12 12 O 1.21280 * 119.99741 * 359.97438 * 11 10 9 13 13 N 1.34778 * 120.00510 * 180.02562 * 11 10 9 14 14 C 1.39401 * 120.00100 * 185.08395 * 13 11 10 15 15 C 1.39036 * 119.69405 * 174.92543 * 14 13 11 16 16 C 1.38369 * 119.10041 * 179.72564 * 15 14 13 17 17 C 1.50695 * 120.75218 * 180.28258 * 16 15 14 18 18 C 1.53001 * 117.49844 * 188.88099 * 17 16 15 19 19 C 1.52994 * 117.49992 * 120.25983 * 17 16 15 20 20 C 1.38838 * 118.49268 * 0.53479 * 16 15 14 21 21 C 1.38073 * 119.30766 * 359.72685 * 20 16 15 22 22 N 1.31927 * 120.85466 * 0.02562 * 21 20 16 23 23 H 0.97003 * 120.00097 * 359.97438 * 1 2 3 24 24 H 1.09000 * 109.46969 * 60.00310 * 10 9 7 25 25 H 1.08995 * 109.47248 * 300.00013 * 10 9 7 26 26 H 0.97001 * 119.99721 * 5.34934 * 13 11 10 27 27 H 1.08002 * 120.45118 * 359.97438 * 15 14 13 28 28 H 1.09006 * 115.55359 * 334.58661 * 17 16 15 29 29 H 1.09001 * 117.49773 * 359.97438 * 18 17 16 30 30 H 1.09000 * 117.50222 * 145.01654 * 18 17 16 31 31 H 1.09001 * 117.50022 * 214.97615 * 19 17 16 32 32 H 1.09006 * 117.49723 * 359.97438 * 19 17 16 33 33 H 1.07997 * 120.34517 * 179.74747 * 20 16 15 34 34 H 1.08007 * 119.57054 * 180.02562 * 21 20 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.7103 1.3463 -0.0006 5 1 1.8915 2.3965 -1.2124 6 1 1.8916 2.3964 1.2125 7 6 2.0103 -1.2021 -0.0005 8 1 3.0902 -1.2021 -0.0010 9 16 1.1292 -2.7280 -0.0019 10 6 2.5157 -3.8914 -0.0029 11 6 1.9873 -5.3027 -0.0048 12 8 0.7911 -5.5023 -0.0050 13 7 2.8440 -6.3432 -0.0054 14 6 2.3589 -7.6455 -0.1141 15 6 3.2513 -8.7063 -0.2206 16 6 2.7564 -9.9945 -0.3221 17 6 3.6901 -11.1721 -0.4329 18 6 3.0728 -12.5358 -0.7494 19 6 3.6063 -12.2449 0.6547 20 6 1.3801 -10.1769 -0.3249 21 6 0.5523 -9.0768 -0.2214 22 7 1.0529 -7.8603 -0.1209 23 1 -0.4850 0.8401 0.0004 24 1 3.1243 -3.7322 0.8872 25 1 3.1243 -3.7306 -0.8927 26 1 3.7980 -6.1860 0.0738 27 1 4.3165 -8.5277 -0.2200 28 1 4.6731 -10.9551 -0.8510 29 1 1.9912 -12.5812 -0.8771 30 1 3.6494 -13.2162 -1.3760 31 1 4.5340 -12.7340 0.9519 32 1 2.8760 -12.0987 1.4506 33 1 0.9614 -11.1691 -0.4069 34 1 -0.5191 -9.2138 -0.2228 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000291246769.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:43:11 Heat of formation + Delta-G solvation = 13.539988 kcal Electronic energy + Delta-G solvation = -17850.148516 eV Core-core repulsion = 14874.611178 eV Total energy + Delta-G solvation = -2975.537338 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 278.083 amu Computer time = 1.32 seconds Orbital eigenvalues (eV) -41.85036 -40.23698 -38.10616 -35.86372 -34.59130 -32.90409 -31.93840 -29.97906 -27.68346 -25.69784 -24.45237 -23.13906 -22.64991 -20.99164 -19.93809 -18.60081 -18.13445 -17.32213 -16.88924 -16.76360 -16.66189 -16.18531 -15.95916 -15.20864 -14.96689 -14.86199 -14.69625 -14.48981 -13.64026 -13.27531 -13.17050 -12.91945 -12.61621 -12.60560 -12.38342 -12.09033 -11.73463 -11.66490 -11.31701 -11.26167 -11.16375 -10.29441 -10.16994 -10.03944 -9.30308 -8.68528 -8.35407 -6.14036 0.11044 0.30434 1.21312 1.41739 1.43859 1.56622 1.62129 2.01474 2.26074 2.76546 2.99007 3.15659 3.21372 3.43246 3.57855 3.85676 3.97742 4.06329 4.10159 4.19210 4.23107 4.26591 4.45782 4.49262 4.76807 4.81401 4.86177 5.06013 5.12063 5.24794 5.30064 5.41807 5.45229 5.81687 6.16498 6.19817 6.97864 7.05864 7.35456 8.74179 Molecular weight = 278.08amu Principal moments of inertia in cm(-1) A = 0.059436 B = 0.002920 C = 0.002807 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 470.984750 B = 9586.365529 C = 9973.957144 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.912 5.912 2 C 0.011 3.989 3 Si 1.002 2.998 4 H -0.255 1.255 5 H -0.274 1.274 6 H -0.274 1.274 7 C -0.544 4.544 8 H 0.086 0.914 9 S -0.152 6.152 10 C -0.126 4.126 11 C 0.522 3.478 12 O -0.499 6.499 13 N -0.647 5.647 14 C 0.341 3.659 15 C -0.196 4.196 16 C 0.014 3.986 17 C -0.133 4.133 18 C -0.167 4.167 19 C -0.161 4.161 20 C -0.201 4.201 21 C 0.115 3.885 22 N -0.533 5.533 23 H 0.271 0.729 24 H 0.116 0.884 25 H 0.115 0.885 26 H 0.435 0.565 27 H 0.166 0.834 28 H 0.131 0.869 29 H 0.102 0.898 30 H 0.115 0.885 31 H 0.115 0.885 32 H 0.091 0.909 33 H 0.160 0.840 34 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.712 -24.875 -0.597 27.941 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.549 5.549 2 C -0.194 4.194 3 Si 0.823 3.177 4 H -0.179 1.179 5 H -0.200 1.200 6 H -0.200 1.200 7 C -0.692 4.692 8 H 0.104 0.896 9 S 0.076 5.924 10 C -0.277 4.277 11 C 0.307 3.693 12 O -0.370 6.370 13 N -0.297 5.297 14 C 0.111 3.889 15 C -0.219 4.219 16 C 0.006 3.994 17 C -0.151 4.151 18 C -0.204 4.204 19 C -0.198 4.198 20 C -0.222 4.222 21 C -0.042 4.042 22 N -0.249 5.249 23 H 0.080 0.920 24 H 0.135 0.865 25 H 0.134 0.866 26 H 0.276 0.724 27 H 0.183 0.817 28 H 0.149 0.851 29 H 0.120 0.880 30 H 0.133 0.867 31 H 0.133 0.867 32 H 0.110 0.890 33 H 0.178 0.822 34 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges 10.016 -24.282 -0.540 26.272 hybrid contribution 2.149 0.938 -0.003 2.345 sum 12.165 -23.344 -0.543 26.329 Atomic orbital electron populations 1.70200 1.08044 1.28576 1.48069 1.26170 0.95988 1.03445 0.93748 0.84866 0.78636 0.76161 0.78029 1.17859 1.19992 1.19965 1.23235 0.95419 0.91746 1.58765 0.89640 1.85680 1.10344 0.99350 1.97071 1.23367 1.03798 0.93201 1.07345 1.20445 0.86571 0.86524 0.75742 1.90798 1.16709 1.85205 1.44257 1.43436 1.11769 1.02537 1.71941 1.18791 0.89668 0.85469 0.94985 1.21480 1.01203 0.90976 1.08249 1.19598 0.93700 0.93452 0.92625 1.21082 0.99712 0.87401 1.06947 1.23200 1.01874 0.96379 0.98905 1.23106 1.04105 1.00250 0.92312 1.22163 0.93626 1.00996 1.05367 1.22951 1.01484 0.86317 0.93462 1.67582 1.13869 1.26616 1.16836 0.91997 0.86541 0.86649 0.72415 0.81660 0.85099 0.87980 0.86703 0.86672 0.89033 0.82222 0.81652 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -56.62 13.22 21.65 0.29 -56.33 16 2 C 0.01 0.63 5.49 84.86 0.47 1.10 16 3 Si 1.00 43.77 29.55 68.60 2.03 45.80 16 4 H -0.26 -10.34 7.11 99.48 0.71 -9.63 16 5 H -0.27 -11.66 7.11 99.48 0.71 -10.96 16 6 H -0.27 -11.65 7.11 99.48 0.71 -10.94 16 7 C -0.54 -31.14 9.50 67.96 0.65 -30.49 16 8 H 0.09 4.51 7.80 -2.91 -0.02 4.49 16 9 S -0.15 -8.54 20.57 -56.49 -1.16 -9.70 16 10 C -0.13 -5.03 6.16 71.23 0.44 -4.59 16 11 C 0.52 20.59 7.81 87.66 0.68 21.28 16 12 O -0.50 -24.87 14.13 -3.03 -0.04 -24.91 16 13 N -0.65 -18.52 5.39 -308.45 -1.66 -20.18 16 14 C 0.34 10.06 7.42 132.92 0.99 11.04 16 15 C -0.20 -3.99 9.67 22.49 0.22 -3.77 16 16 C 0.01 0.26 5.64 -19.69 -0.11 0.15 16 17 C -0.13 -1.52 6.08 -11.54 -0.07 -1.59 16 18 C -0.17 -1.42 9.88 30.59 0.30 -1.12 16 19 C -0.16 -1.46 10.18 30.59 0.31 -1.15 16 20 C -0.20 -3.86 9.38 22.37 0.21 -3.65 16 21 C 0.11 3.05 11.17 84.64 0.95 4.00 16 22 N -0.53 -18.82 7.89 -193.04 -1.52 -20.35 16 23 H 0.27 15.56 8.31 -92.71 -0.77 14.79 16 24 H 0.12 4.08 8.14 -2.40 -0.02 4.06 16 25 H 0.12 4.08 8.14 -2.40 -0.02 4.06 16 26 H 0.44 8.09 8.70 -92.71 -0.81 7.28 16 27 H 0.17 2.16 8.06 -2.91 -0.02 2.14 16 28 H 0.13 1.14 8.14 -2.38 -0.02 1.12 16 29 H 0.10 0.84 6.25 -2.39 -0.01 0.83 16 30 H 0.11 0.66 8.14 -2.39 -0.02 0.64 16 31 H 0.11 0.71 8.14 -2.39 -0.02 0.69 16 32 H 0.09 0.98 8.14 -2.38 -0.02 0.96 16 33 H 0.16 2.06 6.16 -2.91 -0.02 2.04 16 34 H 0.17 3.76 8.06 -2.91 -0.02 3.74 16 Total: -1.00 -82.44 312.64 3.27 -79.17 By element: Atomic # 1 Polarization: 14.98 SS G_CDS: 0.32 Total: 15.31 kcal Atomic # 6 Polarization: -13.83 SS G_CDS: 5.03 Total: -8.80 kcal Atomic # 7 Polarization: -93.96 SS G_CDS: -2.90 Total: -96.86 kcal Atomic # 8 Polarization: -24.87 SS G_CDS: -0.04 Total: -24.91 kcal Atomic # 14 Polarization: 43.77 SS G_CDS: 2.03 Total: 45.80 kcal Atomic # 16 Polarization: -8.54 SS G_CDS: -1.16 Total: -9.70 kcal Total: -82.44 3.27 -79.17 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000291246769.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.707 kcal (2) G-P(sol) polarization free energy of solvation -82.442 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.265 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.275 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.167 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.540 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.32 seconds