Wall clock time and date at job start Tue Mar 31 2020 00:22:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86802 * 119.99681 * 2 1 4 4 H 1.48507 * 109.47047 * 240.00215 * 3 2 1 5 5 H 1.48497 * 109.47457 * 359.97438 * 3 2 1 6 6 H 1.48499 * 109.47213 * 120.00223 * 3 2 1 7 7 C 1.37872 * 120.00581 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00622 * 179.97438 * 7 2 1 9 9 C 1.50701 * 119.99790 * 359.97438 * 7 2 1 10 10 C 1.52999 * 109.47382 * 179.97438 * 9 7 2 11 11 C 1.50697 * 109.47305 * 179.97438 * 10 9 7 12 12 O 1.21297 * 120.00253 * 5.47571 * 11 10 9 13 13 N 1.34771 * 120.00218 * 185.46493 * 11 10 9 14 14 C 1.46042 * 118.63313 * 353.55297 * 13 11 10 15 15 C 1.53576 * 108.62238 * 233.46785 * 14 13 11 16 16 S 1.81704 * 107.87258 * 294.14198 * 15 14 13 17 17 C 1.76496 * 102.57131 * 47.25773 * 16 15 14 18 18 N 1.32797 * 118.73689 * 163.96604 * 17 16 15 19 19 C 1.31810 * 122.10336 * 179.30529 * 18 17 16 20 20 C 1.38049 * 120.78596 * 0.03428 * 19 18 17 21 21 C 1.38639 * 119.26802 * 0.39570 * 20 19 18 22 22 C 1.39306 * 120.94467 * 343.61171 * 17 16 15 23 23 H 0.96997 * 120.00033 * 359.97438 * 1 2 3 24 24 H 1.09002 * 109.47142 * 60.00050 * 9 7 2 25 25 H 1.09000 * 109.47193 * 300.00015 * 9 7 2 26 26 H 1.09002 * 109.46756 * 60.00040 * 10 9 7 27 27 H 1.09000 * 109.47154 * 300.00266 * 10 9 7 28 28 H 1.09000 * 109.61597 * 353.21229 * 14 13 11 29 29 H 1.09007 * 109.61051 * 113.73263 * 14 13 11 30 30 H 1.08995 * 109.77431 * 53.72490 * 15 14 13 31 31 H 1.08999 * 109.78156 * 174.48424 * 15 14 13 32 32 H 1.07993 * 119.60906 * 180.02562 * 19 18 17 33 33 H 1.08001 * 120.37143 * 180.11713 * 20 19 18 34 34 H 1.07994 * 120.59429 * 179.74442 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6965 -1.2126 5 1 1.2841 2.7465 -0.0006 6 1 3.1029 1.6965 1.2125 7 6 2.0046 -1.1939 0.0005 8 1 3.0847 -1.1939 0.0001 9 6 1.2512 -2.4991 0.0017 10 6 2.2455 -3.6620 0.0015 11 6 1.4920 -4.9671 0.0033 12 8 0.2831 -4.9697 -0.0956 13 7 2.1614 -6.1315 0.1145 14 6 3.6214 -6.1048 0.0880 15 6 4.1101 -7.0792 -0.9937 16 16 3.6580 -8.7609 -0.4748 17 6 1.9703 -8.5737 0.0064 18 7 1.2200 -9.6613 0.1396 19 6 -0.0439 -9.5995 0.5086 20 6 -0.6440 -8.3848 0.7737 21 6 0.0957 -7.2199 0.6401 22 6 1.4307 -7.3129 0.2508 23 1 -0.4850 0.8400 0.0004 24 1 0.6242 -2.5575 -0.8880 25 1 0.6249 -2.5563 0.8920 26 1 2.8728 -3.6038 0.8910 27 1 2.8715 -3.6046 -0.8890 28 1 3.9647 -5.0969 -0.1454 29 1 4.0106 -6.4109 1.0591 30 1 3.6311 -6.8454 -1.9444 31 1 5.1925 -7.0026 -1.0974 32 1 -0.6168 -10.5099 0.6047 33 1 -1.6795 -8.3421 1.0775 34 1 -0.3535 -6.2579 0.8379 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000291417982.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:22:59 Heat of formation + Delta-G solvation = 14.984537 kcal Electronic energy + Delta-G solvation = -19000.466951 eV Core-core repulsion = 16024.992253 eV Total energy + Delta-G solvation = -2975.474698 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 278.083 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -41.14741 -39.11946 -36.49039 -33.83146 -32.48849 -31.54319 -31.14453 -29.84201 -26.08291 -24.28037 -24.03157 -23.05689 -21.52305 -19.24189 -18.08131 -17.54470 -17.40445 -16.28860 -16.17164 -15.37732 -15.34534 -14.56214 -14.42017 -14.20702 -13.89448 -13.61130 -13.38516 -13.12042 -12.72786 -12.33681 -12.27231 -11.85381 -11.30583 -11.02287 -10.76208 -10.74395 -10.58191 -10.15820 -10.09387 -9.87781 -9.70069 -9.28652 -9.07666 -8.49673 -8.42993 -7.54827 -6.07663 -4.13251 0.85787 1.16931 1.26434 2.10719 2.64159 2.72419 3.27147 3.32793 3.33683 3.71687 4.28918 4.34507 4.46430 4.56392 4.74294 4.78590 5.01682 5.12783 5.16665 5.21558 5.27805 5.42915 5.47189 5.77308 5.90644 5.96620 6.21920 6.27327 6.59423 6.78074 7.15248 7.58276 7.65976 7.74494 7.90891 8.13574 8.29584 8.93577 9.51351 11.03122 Molecular weight = 278.08amu Principal moments of inertia in cm(-1) A = 0.029098 B = 0.004268 C = 0.003763 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 962.028202 B = 6559.445284 C = 7438.625870 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.888 5.888 2 C 0.061 3.939 3 Si 0.894 3.106 4 H -0.276 1.276 5 H -0.287 1.287 6 H -0.276 1.276 7 C -0.531 4.531 8 H 0.056 0.944 9 C 0.037 3.963 10 C -0.129 4.129 11 C 0.509 3.491 12 O -0.501 6.501 13 N -0.564 5.564 14 C 0.097 3.903 15 C -0.131 4.131 16 S -0.067 6.067 17 C 0.081 3.919 18 N -0.450 5.450 19 C 0.083 3.917 20 C -0.152 4.152 21 C -0.095 4.095 22 C 0.115 3.885 23 H 0.263 0.737 24 H 0.027 0.973 25 H 0.024 0.976 26 H 0.087 0.913 27 H 0.088 0.912 28 H 0.121 0.879 29 H 0.091 0.909 30 H 0.099 0.901 31 H 0.133 0.867 32 H 0.160 0.840 33 H 0.140 0.860 34 H 0.182 0.818 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.562 -16.103 0.631 17.401 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.526 5.526 2 C -0.142 4.142 3 Si 0.722 3.278 4 H -0.202 1.202 5 H -0.212 1.212 6 H -0.202 1.202 7 C -0.570 4.570 8 H 0.075 0.925 9 C -0.001 4.001 10 C -0.168 4.168 11 C 0.302 3.698 12 O -0.374 6.374 13 N -0.289 5.289 14 C -0.027 4.027 15 C -0.281 4.281 16 S 0.171 5.829 17 C -0.169 4.169 18 N -0.161 5.161 19 C -0.079 4.079 20 C -0.175 4.175 21 C -0.124 4.124 22 C 0.011 3.989 23 H 0.073 0.927 24 H 0.045 0.955 25 H 0.042 0.958 26 H 0.105 0.895 27 H 0.106 0.894 28 H 0.139 0.861 29 H 0.109 0.891 30 H 0.118 0.882 31 H 0.151 0.849 32 H 0.177 0.823 33 H 0.158 0.842 34 H 0.199 0.801 Dipole moment (debyes) X Y Z Total from point charges 6.972 -17.661 0.350 18.990 hybrid contribution -0.773 2.661 0.128 2.774 sum 6.199 -15.000 0.477 16.237 Atomic orbital electron populations 1.69971 1.06098 1.26932 1.49644 1.25008 0.94831 0.99300 0.95047 0.86631 0.79562 0.83023 0.78610 1.20183 1.21210 1.20171 1.21108 0.92895 0.90782 1.52179 0.92533 1.18943 0.93083 0.89231 0.98823 1.22021 1.01039 0.90818 1.02946 1.22085 0.88664 0.85290 0.73773 1.90495 1.14689 1.86379 1.45879 1.45768 1.07066 1.05352 1.70692 1.22106 0.78608 1.02622 0.99367 1.24246 1.06379 0.95091 1.02373 1.85478 1.03382 1.13523 1.80506 1.22308 0.99616 0.89668 1.05318 1.67612 1.06581 1.28995 1.12934 1.22613 0.90219 0.97965 0.97145 1.22156 1.01585 0.92726 1.01048 1.22834 0.92266 1.02225 0.95073 1.18594 0.93485 0.86263 1.00521 0.92742 0.95504 0.95772 0.89514 0.89375 0.86098 0.89064 0.88205 0.84871 0.82315 0.84241 0.80116 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.31 13.29 55.43 0.74 -25.58 16 2 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 3 Si 0.89 20.80 29.54 -169.99 -5.02 15.78 16 4 H -0.28 -6.28 7.11 56.52 0.40 -5.87 16 5 H -0.29 -6.67 7.11 56.52 0.40 -6.26 16 6 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 7 C -0.53 -14.20 9.11 -34.44 -0.31 -14.51 16 8 H 0.06 1.41 7.74 -52.48 -0.41 1.00 16 9 C 0.04 0.92 4.28 -27.88 -0.12 0.80 16 10 C -0.13 -2.34 3.93 -27.88 -0.11 -2.45 16 11 C 0.51 9.13 7.43 -10.99 -0.08 9.05 16 12 O -0.50 -10.62 12.45 5.54 0.07 -10.55 16 13 N -0.56 -8.35 2.87 -113.29 -0.32 -8.68 16 14 C 0.10 1.02 6.05 -3.99 -0.02 0.99 16 15 C -0.13 -1.22 6.67 37.46 0.25 -0.97 16 16 S -0.07 -0.82 22.35 -107.50 -2.40 -3.23 16 17 C 0.08 1.22 7.00 -16.74 -0.12 1.10 16 18 N -0.45 -6.74 10.29 -11.96 -0.12 -6.86 16 19 C 0.08 1.04 11.18 -17.63 -0.20 0.84 16 20 C -0.15 -1.95 10.10 -39.50 -0.40 -2.35 16 21 C -0.10 -1.50 8.71 -39.01 -0.34 -1.84 16 22 C 0.12 1.81 6.32 -83.51 -0.53 1.29 16 23 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 24 H 0.03 0.74 8.04 -51.93 -0.42 0.32 16 25 H 0.02 0.66 8.14 -51.93 -0.42 0.23 16 26 H 0.09 1.40 7.87 -51.93 -0.41 0.99 16 27 H 0.09 1.42 7.59 -51.93 -0.39 1.03 16 28 H 0.12 1.09 5.70 -51.93 -0.30 0.79 16 29 H 0.09 0.86 8.14 -51.92 -0.42 0.43 16 30 H 0.10 0.99 8.14 -51.93 -0.42 0.57 16 31 H 0.13 0.80 8.14 -51.93 -0.42 0.37 16 32 H 0.16 1.42 8.06 -52.49 -0.42 1.00 16 33 H 0.14 1.38 8.06 -52.49 -0.42 0.96 16 34 H 0.18 3.20 5.06 -54.20 -0.27 2.92 16 LS Contribution 297.32 15.07 4.48 4.48 Total: -1.00 -32.93 297.32 -8.53 -41.46 By element: Atomic # 1 Polarization: 3.50 SS G_CDS: -3.87 Total: -0.36 kcal Atomic # 6 Polarization: -4.39 SS G_CDS: -2.08 Total: -6.46 kcal Atomic # 7 Polarization: -41.40 SS G_CDS: 0.29 Total: -41.11 kcal Atomic # 8 Polarization: -10.62 SS G_CDS: 0.07 Total: -10.55 kcal Atomic # 14 Polarization: 20.80 SS G_CDS: -5.02 Total: 15.78 kcal Atomic # 16 Polarization: -0.82 SS G_CDS: -2.40 Total: -3.23 kcal Total LS contribution 4.48 Total: 4.48 kcal Total: -32.93 -8.53 -41.46 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000291417982.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.441 kcal (2) G-P(sol) polarization free energy of solvation -32.927 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.514 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.530 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.457 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.985 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds