Wall clock time and date at job start Tue Mar 31 2020 00:22:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86802 * 119.99681 * 2 1 4 4 H 1.48507 * 109.47047 * 240.00215 * 3 2 1 5 5 H 1.48497 * 109.47457 * 359.97438 * 3 2 1 6 6 H 1.48499 * 109.47213 * 120.00223 * 3 2 1 7 7 C 1.37872 * 120.00581 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00622 * 179.97438 * 7 2 1 9 9 C 1.50701 * 119.99790 * 359.97438 * 7 2 1 10 10 C 1.52999 * 109.47382 * 179.97438 * 9 7 2 11 11 C 1.50697 * 109.47305 * 179.97438 * 10 9 7 12 12 O 1.21297 * 120.00253 * 5.47571 * 11 10 9 13 13 N 1.34771 * 120.00218 * 185.46493 * 11 10 9 14 14 C 1.46042 * 118.63313 * 353.55297 * 13 11 10 15 15 C 1.53576 * 108.62238 * 233.46785 * 14 13 11 16 16 S 1.81704 * 107.87258 * 294.14198 * 15 14 13 17 17 C 1.76496 * 102.57131 * 47.25773 * 16 15 14 18 18 N 1.32797 * 118.73689 * 163.96604 * 17 16 15 19 19 C 1.31810 * 122.10336 * 179.30529 * 18 17 16 20 20 C 1.38049 * 120.78596 * 0.03428 * 19 18 17 21 21 C 1.38639 * 119.26802 * 0.39570 * 20 19 18 22 22 C 1.39306 * 120.94467 * 343.61171 * 17 16 15 23 23 H 0.96997 * 120.00033 * 359.97438 * 1 2 3 24 24 H 1.09002 * 109.47142 * 60.00050 * 9 7 2 25 25 H 1.09000 * 109.47193 * 300.00015 * 9 7 2 26 26 H 1.09002 * 109.46756 * 60.00040 * 10 9 7 27 27 H 1.09000 * 109.47154 * 300.00266 * 10 9 7 28 28 H 1.09000 * 109.61597 * 353.21229 * 14 13 11 29 29 H 1.09007 * 109.61051 * 113.73263 * 14 13 11 30 30 H 1.08995 * 109.77431 * 53.72490 * 15 14 13 31 31 H 1.08999 * 109.78156 * 174.48424 * 15 14 13 32 32 H 1.07993 * 119.60906 * 180.02562 * 19 18 17 33 33 H 1.08001 * 120.37143 * 180.11713 * 20 19 18 34 34 H 1.07994 * 120.59429 * 179.74442 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6965 -1.2126 5 1 1.2841 2.7465 -0.0006 6 1 3.1029 1.6965 1.2125 7 6 2.0046 -1.1939 0.0005 8 1 3.0847 -1.1939 0.0001 9 6 1.2512 -2.4991 0.0017 10 6 2.2455 -3.6620 0.0015 11 6 1.4920 -4.9671 0.0033 12 8 0.2831 -4.9697 -0.0956 13 7 2.1614 -6.1315 0.1145 14 6 3.6214 -6.1048 0.0880 15 6 4.1101 -7.0792 -0.9937 16 16 3.6580 -8.7609 -0.4748 17 6 1.9703 -8.5737 0.0064 18 7 1.2200 -9.6613 0.1396 19 6 -0.0439 -9.5995 0.5086 20 6 -0.6440 -8.3848 0.7737 21 6 0.0957 -7.2199 0.6401 22 6 1.4307 -7.3129 0.2508 23 1 -0.4850 0.8400 0.0004 24 1 0.6242 -2.5575 -0.8880 25 1 0.6249 -2.5563 0.8920 26 1 2.8728 -3.6038 0.8910 27 1 2.8715 -3.6046 -0.8890 28 1 3.9647 -5.0969 -0.1454 29 1 4.0106 -6.4109 1.0591 30 1 3.6311 -6.8454 -1.9444 31 1 5.1925 -7.0026 -1.0974 32 1 -0.6168 -10.5099 0.6047 33 1 -1.6795 -8.3421 1.0775 34 1 -0.3535 -6.2579 0.8379 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000291417982.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:22:58 Heat of formation + Delta-G solvation = -6.349777 kcal Electronic energy + Delta-G solvation = -19001.392077 eV Core-core repulsion = 16024.992253 eV Total energy + Delta-G solvation = -2976.399823 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 278.083 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -42.34767 -40.30897 -37.68497 -35.71788 -33.78890 -32.97935 -32.25736 -31.09387 -27.86516 -25.32900 -25.20961 -24.31322 -23.08288 -20.58154 -19.14923 -18.96284 -18.52192 -18.04332 -17.30693 -16.57740 -16.51423 -16.40111 -15.66785 -15.29641 -15.07501 -14.71073 -14.57294 -14.25593 -14.19883 -13.76693 -13.54083 -13.20400 -12.80628 -12.77445 -12.52857 -11.98709 -11.84843 -11.71204 -11.44273 -11.34882 -11.21517 -10.94859 -10.55811 -10.31746 -9.60972 -8.53829 -8.18345 -6.32062 -0.21725 0.10641 0.25996 1.20281 1.39667 1.43708 1.47470 1.52488 1.55661 2.42911 2.64154 3.15874 3.31724 3.46462 3.57803 3.78824 3.93415 3.99845 4.08707 4.22557 4.33612 4.40880 4.44872 4.49884 4.70763 4.75449 4.99039 5.15314 5.21058 5.48553 5.58160 5.65465 5.82757 5.94442 6.14941 6.68533 6.82353 6.90952 7.38710 8.93929 Molecular weight = 278.08amu Principal moments of inertia in cm(-1) A = 0.029098 B = 0.004268 C = 0.003763 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 962.028202 B = 6559.445284 C = 7438.625870 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.937 5.937 2 C -0.004 4.004 3 Si 0.970 3.030 4 H -0.262 1.262 5 H -0.291 1.291 6 H -0.262 1.262 7 C -0.541 4.541 8 H 0.080 0.920 9 C 0.042 3.958 10 C -0.114 4.114 11 C 0.509 3.491 12 O -0.547 6.547 13 N -0.556 5.556 14 C 0.086 3.914 15 C -0.120 4.120 16 S -0.069 6.069 17 C 0.070 3.930 18 N -0.470 5.470 19 C 0.089 3.911 20 C -0.149 4.149 21 C -0.120 4.120 22 C 0.093 3.907 23 H 0.262 0.738 24 H -0.015 1.015 25 H -0.016 1.016 26 H 0.115 0.885 27 H 0.117 0.883 28 H 0.142 0.858 29 H 0.107 0.893 30 H 0.095 0.905 31 H 0.176 0.824 32 H 0.198 0.802 33 H 0.167 0.833 34 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.380 -16.746 0.551 19.201 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.577 5.577 2 C -0.202 4.202 3 Si 0.794 3.206 4 H -0.187 1.187 5 H -0.217 1.217 6 H -0.186 1.186 7 C -0.579 4.579 8 H 0.098 0.902 9 C 0.004 3.996 10 C -0.153 4.153 11 C 0.301 3.699 12 O -0.425 6.425 13 N -0.280 5.280 14 C -0.036 4.036 15 C -0.269 4.269 16 S 0.169 5.831 17 C -0.179 4.179 18 N -0.181 5.181 19 C -0.073 4.073 20 C -0.171 4.171 21 C -0.149 4.149 22 C -0.011 4.011 23 H 0.071 0.929 24 H 0.003 0.997 25 H 0.003 0.997 26 H 0.133 0.867 27 H 0.135 0.865 28 H 0.160 0.840 29 H 0.125 0.875 30 H 0.114 0.886 31 H 0.193 0.807 32 H 0.215 0.785 33 H 0.184 0.816 34 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges 9.851 -18.345 0.272 20.825 hybrid contribution -1.683 2.757 0.163 3.235 sum 8.168 -15.588 0.434 17.604 Atomic orbital electron populations 1.70157 1.08306 1.27847 1.51421 1.26079 0.95625 1.03820 0.94658 0.85422 0.78074 0.77551 0.79506 1.18675 1.21729 1.18646 1.21652 0.94146 0.91293 1.50838 0.90160 1.18716 0.93676 0.92218 0.94995 1.21780 0.99529 0.88380 1.05645 1.21964 0.88048 0.86236 0.73605 1.90506 1.16612 1.87133 1.48207 1.45697 1.08653 1.04090 1.69526 1.22518 0.75934 1.04315 1.00858 1.24395 1.08722 0.92470 1.01347 1.85432 1.01277 1.16181 1.80174 1.22673 1.01094 0.89251 1.04931 1.67737 1.07629 1.29077 1.13693 1.23255 0.89783 0.99145 0.95147 1.22453 1.02642 0.91935 1.00080 1.22777 0.93225 1.02317 0.96607 1.18710 0.93724 0.86868 1.01805 0.92924 0.99652 0.99726 0.86691 0.86473 0.84037 0.87469 0.88640 0.80661 0.78521 0.81573 0.82629 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.45 13.29 21.45 0.28 -57.16 16 2 C 0.00 -0.23 5.46 84.65 0.46 0.24 16 3 Si 0.97 42.35 29.54 68.60 2.03 44.38 16 4 H -0.26 -10.77 7.11 99.48 0.71 -10.06 16 5 H -0.29 -12.83 7.11 99.48 0.71 -12.12 16 6 H -0.26 -10.75 7.11 99.48 0.71 -10.04 16 7 C -0.54 -28.83 9.11 25.60 0.23 -28.60 16 8 H 0.08 3.80 7.74 -2.91 -0.02 3.78 16 9 C 0.04 2.15 4.28 29.85 0.13 2.28 16 10 C -0.11 -4.06 3.93 29.85 0.12 -3.94 16 11 C 0.51 18.55 7.43 87.66 0.65 19.20 16 12 O -0.55 -24.72 12.45 -3.08 -0.04 -24.76 16 13 N -0.56 -16.09 2.87 -630.72 -1.81 -17.89 16 14 C 0.09 1.56 6.05 86.66 0.52 2.08 16 15 C -0.12 -1.84 6.67 72.18 0.48 -1.36 16 16 S -0.07 -1.55 22.35 -56.49 -1.26 -2.81 16 17 C 0.07 2.04 7.00 84.80 0.59 2.64 16 18 N -0.47 -13.50 10.29 -191.76 -1.97 -15.47 16 19 C 0.09 2.08 11.18 84.65 0.95 3.03 16 20 C -0.15 -3.75 10.10 22.32 0.23 -3.52 16 21 C -0.12 -3.94 8.71 22.64 0.20 -3.74 16 22 C 0.09 2.92 6.32 38.44 0.24 3.16 16 23 H 0.26 15.17 8.31 -92.71 -0.77 14.40 16 24 H -0.01 -0.89 8.04 -2.39 -0.02 -0.91 16 25 H -0.02 -0.92 8.14 -2.39 -0.02 -0.94 16 26 H 0.12 3.44 7.87 -2.39 -0.02 3.42 16 27 H 0.12 3.48 7.59 -2.39 -0.02 3.46 16 28 H 0.14 1.98 5.70 -2.39 -0.01 1.97 16 29 H 0.11 1.66 8.14 -2.38 -0.02 1.65 16 30 H 0.09 1.63 8.14 -2.39 -0.02 1.61 16 31 H 0.18 1.23 8.14 -2.39 -0.02 1.21 16 32 H 0.20 2.94 8.06 -2.91 -0.02 2.92 16 33 H 0.17 3.12 8.06 -2.91 -0.02 3.09 16 34 H 0.16 5.95 5.06 -29.95 -0.15 5.80 16 Total: -1.00 -76.03 297.32 3.01 -73.02 By element: Atomic # 1 Polarization: 8.25 SS G_CDS: 0.98 Total: 9.23 kcal Atomic # 6 Polarization: -13.34 SS G_CDS: 4.80 Total: -8.54 kcal Atomic # 7 Polarization: -87.03 SS G_CDS: -3.50 Total: -90.53 kcal Atomic # 8 Polarization: -24.72 SS G_CDS: -0.04 Total: -24.76 kcal Atomic # 14 Polarization: 42.35 SS G_CDS: 2.03 Total: 44.38 kcal Atomic # 16 Polarization: -1.55 SS G_CDS: -1.26 Total: -2.81 kcal Total: -76.03 3.01 -73.02 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000291417982.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.672 kcal (2) G-P(sol) polarization free energy of solvation -76.035 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.363 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.013 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.022 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.350 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds