Wall clock time and date at job start Tue Mar 31 2020 01:03:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.33391 * 125.19860 * 2 1 4 4 C 1.38422 * 114.91681 * 180.02562 * 3 2 1 5 5 C 1.33383 * 114.92290 * 359.97438 * 4 3 2 6 6 C 1.50703 * 125.20295 * 179.97438 * 5 4 3 7 7 C 1.52995 * 109.47631 * 90.00008 * 6 5 4 8 8 C 1.50697 * 109.47369 * 179.97438 * 7 6 5 9 9 O 1.21298 * 120.00272 * 0.02562 * 8 7 6 10 10 N 1.34776 * 120.00099 * 179.97438 * 8 7 6 11 11 C 1.37101 * 120.00188 * 179.97438 * 10 8 7 12 12 H 1.08002 * 119.99703 * 20.22655 * 11 10 8 13 13 C 1.38949 * 119.99965 * 200.22228 * 11 10 8 14 14 N 1.31407 * 120.00012 * 21.42515 * 13 11 10 15 15 Si 1.86801 * 119.99732 * 201.42507 * 13 11 10 16 16 H 1.48506 * 109.47083 * 60.00331 * 15 13 11 17 17 H 1.48501 * 109.47291 * 179.97438 * 15 13 11 18 18 H 1.48498 * 109.47282 * 300.00152 * 15 13 11 19 19 C 1.46497 * 119.99794 * 0.02562 * 10 8 7 20 20 C 1.47194 * 109.47728 * 83.94852 * 19 10 8 21 21 N 7.21683 * 125.98947 * 129.61746 * 2 1 3 22 22 S 1.75885 * 125.20368 * 180.31741 * 2 1 3 23 23 H 1.08994 * 109.47247 * 90.00915 * 1 2 3 24 24 H 1.09002 * 109.46969 * 210.00178 * 1 2 3 25 25 H 1.08999 * 109.47496 * 329.99956 * 1 2 3 26 26 H 1.07995 * 122.54081 * 0.02562 * 3 2 1 27 27 H 1.08008 * 122.53585 * 180.02562 * 4 3 2 28 28 H 1.09004 * 109.46858 * 329.99586 * 6 5 4 29 29 H 1.09008 * 109.47187 * 210.00412 * 6 5 4 30 30 H 1.09000 * 109.47175 * 300.00156 * 7 6 5 31 31 H 1.09005 * 109.46839 * 59.99731 * 7 6 5 32 32 H 0.97001 * 119.99778 * 180.02562 * 14 13 11 33 33 H 1.09006 * 109.47179 * 203.94938 * 19 10 8 34 34 H 1.09004 * 109.47455 * 323.94287 * 19 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2759 1.0900 0.0000 4 6 3.6379 0.8429 -0.0006 5 6 3.9750 -0.4476 -0.0005 6 6 5.3861 -0.9769 -0.0016 7 6 5.8649 -1.1556 1.4405 8 6 7.2757 -1.6855 1.4393 9 8 7.8426 -1.8987 0.3884 10 7 7.9079 -1.9214 2.6060 11 6 9.1911 -2.4040 2.6050 12 1 9.8093 -2.2923 1.7264 13 6 9.6964 -3.0367 3.7342 14 7 8.8752 -3.5491 4.6230 15 14 11.5429 -3.1589 3.9888 16 1 12.1253 -1.7942 4.0513 17 1 11.8211 -3.8739 5.2602 18 1 12.1503 -3.9049 2.8576 19 6 7.2234 -1.6634 3.8752 20 6 6.3906 -2.8245 4.2287 21 7 5.7479 -3.7235 4.4981 22 16 2.5210 -1.4371 -0.0080 23 1 -0.3633 -0.0002 -1.0276 24 1 -0.3633 -0.8900 0.5139 25 1 -0.3634 0.8899 0.5138 26 1 1.8668 2.0895 0.0004 27 1 4.3720 1.6352 -0.0002 28 1 6.0384 -0.2713 -0.5163 29 1 5.4133 -1.9379 -0.5152 30 1 5.8378 -0.1946 1.9541 31 1 5.2126 -1.8611 1.9551 32 1 9.2280 -3.9904 5.4115 33 1 7.9622 -1.4942 4.6587 34 1 6.5920 -0.7805 3.7746 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000291446710.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:03:40 Heat of formation + Delta-G solvation = 21.584090 kcal Electronic energy + Delta-G solvation = -18538.607724 eV Core-core repulsion = 15563.419204 eV Total energy + Delta-G solvation = -2975.188520 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 278.083 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -38.98621 -37.95489 -35.82728 -34.41984 -33.68286 -31.89886 -30.80218 -27.55849 -26.92810 -24.83357 -23.37794 -22.19742 -19.09194 -18.67324 -17.89680 -16.96418 -16.46807 -16.07803 -15.10863 -14.69689 -14.50204 -14.29964 -13.99474 -13.32908 -13.08185 -12.97609 -12.93821 -12.55078 -12.28788 -12.06680 -11.80191 -11.67107 -11.45853 -11.37996 -11.20032 -11.10811 -10.79516 -10.58989 -10.46731 -10.42568 -10.28223 -9.25227 -8.67808 -8.39975 -8.30406 -8.02993 -6.50415 -4.01476 1.05129 1.67130 2.08818 2.79171 3.12075 3.21723 3.24009 3.55425 3.80585 3.98293 4.11885 4.68374 4.81559 4.88624 5.08711 5.15299 5.21267 5.35670 5.38216 5.47169 5.52924 5.61950 5.76618 5.84448 5.92813 6.07041 6.17710 6.31196 6.40663 6.41848 6.47127 6.64140 7.46885 7.90917 8.27608 8.75458 8.99733 9.19234 9.73584 10.55823 Molecular weight = 278.08amu Principal moments of inertia in cm(-1) A = 0.032351 B = 0.004069 C = 0.003804 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 865.286826 B = 6880.379346 C = 7358.212696 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 C -0.193 4.193 3 C -0.136 4.136 4 C -0.145 4.145 5 C -0.159 4.159 6 C -0.031 4.031 7 C -0.130 4.130 8 C 0.457 3.543 9 O -0.574 6.574 10 N -0.443 5.443 11 C -0.317 4.317 12 H 0.107 0.893 13 C 0.033 3.967 14 N -0.876 5.876 15 Si 0.927 3.073 16 H -0.272 1.272 17 H -0.285 1.285 18 H -0.273 1.273 19 C 0.222 3.778 20 C 0.244 3.756 21 N -0.471 5.471 22 S 0.094 5.906 23 H 0.071 0.929 24 H 0.066 0.934 25 H 0.073 0.927 26 H 0.135 0.865 27 H 0.139 0.861 28 H 0.090 0.910 29 H 0.079 0.921 30 H 0.085 0.915 31 H 0.079 0.921 32 H 0.274 0.726 33 H 0.124 0.876 34 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.755 10.292 -4.315 16.208 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.311 4.311 3 C -0.167 4.167 4 C -0.174 4.174 5 C -0.276 4.276 6 C -0.071 4.071 7 C -0.171 4.171 8 C 0.245 3.755 9 O -0.456 6.456 10 N -0.163 5.163 11 C -0.444 4.444 12 H 0.125 0.875 13 C -0.171 4.171 14 N -0.514 5.514 15 Si 0.753 3.247 16 H -0.197 1.197 17 H -0.210 1.210 18 H -0.198 1.198 19 C 0.094 3.906 20 C -0.074 4.074 21 N -0.151 5.151 22 S 0.358 5.642 23 H 0.089 0.911 24 H 0.085 0.915 25 H 0.092 0.908 26 H 0.152 0.848 27 H 0.157 0.843 28 H 0.108 0.892 29 H 0.098 0.902 30 H 0.103 0.897 31 H 0.097 0.903 32 H 0.084 0.916 33 H 0.141 0.859 34 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -12.666 7.194 -4.267 15.179 hybrid contribution 1.441 1.541 0.380 2.144 sum -11.226 8.736 -3.887 14.746 Atomic orbital electron populations 1.20288 0.88187 1.02920 1.02412 1.24448 0.99759 0.96038 1.10827 1.20026 0.93000 0.98921 1.04713 1.20074 0.96088 0.95981 1.05289 1.24655 0.98866 0.96260 1.07848 1.19873 0.87926 1.02376 0.96914 1.21628 0.95847 1.02288 0.97332 1.20132 0.87311 0.83728 0.84287 1.90545 1.67775 1.56666 1.30661 1.43622 1.13276 1.57106 1.02325 1.19655 0.86865 1.35972 1.01897 0.87513 1.25290 1.00396 0.94781 0.96623 1.69839 1.35051 1.33924 1.12600 0.85979 0.82379 0.78598 0.77715 1.19695 1.21041 1.19807 1.18684 0.93546 0.88165 0.90155 1.29342 0.90767 0.94654 0.92625 1.80954 1.15054 1.10023 1.09101 1.84409 0.96899 1.09482 1.73422 0.91064 0.91486 0.90791 0.84755 0.84295 0.89156 0.90221 0.89691 0.90251 0.91578 0.85862 0.89729 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.67 10.38 36.01 0.37 -0.29 16 2 C -0.19 -2.21 6.51 -36.00 -0.23 -2.45 16 3 C -0.14 -1.54 10.05 -41.21 -0.41 -1.95 16 4 C -0.14 -1.79 10.05 -41.21 -0.41 -2.20 16 5 C -0.16 -2.22 5.76 -36.00 -0.21 -2.42 16 6 C -0.03 -0.49 5.00 -27.88 -0.14 -0.63 16 7 C -0.13 -2.22 4.29 -27.89 -0.12 -2.33 16 8 C 0.46 10.16 7.56 -10.99 -0.08 10.08 16 9 O -0.57 -14.69 15.65 5.54 0.09 -14.60 16 10 N -0.44 -10.23 2.60 -117.93 -0.31 -10.54 16 11 C -0.32 -8.12 9.27 -14.93 -0.14 -8.26 16 12 H 0.11 2.88 7.43 -52.49 -0.39 2.49 16 13 C 0.03 0.81 4.84 -17.47 -0.08 0.73 16 14 N -0.88 -22.17 9.58 55.50 0.53 -21.64 16 15 Si 0.93 19.56 29.60 -169.99 -5.03 14.53 16 16 H -0.27 -5.57 7.11 56.52 0.40 -5.17 16 17 H -0.28 -6.00 7.11 56.52 0.40 -5.60 16 18 H -0.27 -5.90 7.11 56.52 0.40 -5.50 16 19 C 0.22 4.36 4.91 -6.83 -0.03 4.32 16 20 C 0.24 5.40 12.82 -20.71 -0.27 5.13 16 21 N -0.47 -11.26 18.55 42.21 0.78 -10.48 16 22 S 0.09 1.25 23.31 -107.50 -2.51 -1.26 16 23 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 24 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 25 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 26 H 0.13 1.20 8.06 -52.49 -0.42 0.78 16 27 H 0.14 1.49 8.06 -52.48 -0.42 1.07 16 28 H 0.09 1.40 8.10 -51.93 -0.42 0.98 16 29 H 0.08 1.36 8.10 -51.92 -0.42 0.94 16 30 H 0.08 1.22 7.42 -51.93 -0.39 0.83 16 31 H 0.08 1.39 7.49 -51.93 -0.39 1.00 16 32 H 0.27 6.75 8.31 -40.82 -0.34 6.41 16 33 H 0.12 2.45 6.63 -51.93 -0.34 2.11 16 34 H 0.08 1.26 6.69 -51.93 -0.35 0.91 16 LS Contribution 312.77 15.07 4.71 4.71 Total: -1.00 -30.56 312.77 -7.44 -37.99 By element: Atomic # 1 Polarization: 5.51 SS G_CDS: -3.95 Total: 1.56 kcal Atomic # 6 Polarization: 1.48 SS G_CDS: -1.76 Total: -0.28 kcal Atomic # 7 Polarization: -43.66 SS G_CDS: 1.01 Total: -42.66 kcal Atomic # 8 Polarization: -14.69 SS G_CDS: 0.09 Total: -14.60 kcal Atomic # 14 Polarization: 19.56 SS G_CDS: -5.03 Total: 14.53 kcal Atomic # 16 Polarization: 1.25 SS G_CDS: -2.51 Total: -1.26 kcal Total LS contribution 4.71 Total: 4.71 kcal Total: -30.56 -7.44 -37.99 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000291446710.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.576 kcal (2) G-P(sol) polarization free energy of solvation -30.556 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.020 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.436 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.992 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.584 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds