Wall clock time and date at job start Tue Mar 31 2020 01:03:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.33391 * 125.19860 * 2 1 4 4 C 1.38422 * 114.91681 * 180.02562 * 3 2 1 5 5 C 1.33383 * 114.92290 * 359.97438 * 4 3 2 6 6 C 1.50703 * 125.20295 * 179.97438 * 5 4 3 7 7 C 1.52995 * 109.47631 * 90.00008 * 6 5 4 8 8 C 1.50697 * 109.47369 * 179.97438 * 7 6 5 9 9 O 1.21298 * 120.00272 * 0.02562 * 8 7 6 10 10 N 1.34776 * 120.00099 * 179.97438 * 8 7 6 11 11 C 1.37101 * 120.00188 * 179.97438 * 10 8 7 12 12 H 1.08002 * 119.99703 * 20.22655 * 11 10 8 13 13 C 1.38949 * 119.99965 * 200.22228 * 11 10 8 14 14 N 1.31407 * 120.00012 * 21.42515 * 13 11 10 15 15 Si 1.86801 * 119.99732 * 201.42507 * 13 11 10 16 16 H 1.48506 * 109.47083 * 60.00331 * 15 13 11 17 17 H 1.48501 * 109.47291 * 179.97438 * 15 13 11 18 18 H 1.48498 * 109.47282 * 300.00152 * 15 13 11 19 19 C 1.46497 * 119.99794 * 0.02562 * 10 8 7 20 20 C 1.47194 * 109.47728 * 83.94852 * 19 10 8 21 21 N 7.21683 * 125.98947 * 129.61746 * 2 1 3 22 22 S 1.75885 * 125.20368 * 180.31741 * 2 1 3 23 23 H 1.08994 * 109.47247 * 90.00915 * 1 2 3 24 24 H 1.09002 * 109.46969 * 210.00178 * 1 2 3 25 25 H 1.08999 * 109.47496 * 329.99956 * 1 2 3 26 26 H 1.07995 * 122.54081 * 0.02562 * 3 2 1 27 27 H 1.08008 * 122.53585 * 180.02562 * 4 3 2 28 28 H 1.09004 * 109.46858 * 329.99586 * 6 5 4 29 29 H 1.09008 * 109.47187 * 210.00412 * 6 5 4 30 30 H 1.09000 * 109.47175 * 300.00156 * 7 6 5 31 31 H 1.09005 * 109.46839 * 59.99731 * 7 6 5 32 32 H 0.97001 * 119.99778 * 180.02562 * 14 13 11 33 33 H 1.09006 * 109.47179 * 203.94938 * 19 10 8 34 34 H 1.09004 * 109.47455 * 323.94287 * 19 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2759 1.0900 0.0000 4 6 3.6379 0.8429 -0.0006 5 6 3.9750 -0.4476 -0.0005 6 6 5.3861 -0.9769 -0.0016 7 6 5.8649 -1.1556 1.4405 8 6 7.2757 -1.6855 1.4393 9 8 7.8426 -1.8987 0.3884 10 7 7.9079 -1.9214 2.6060 11 6 9.1911 -2.4040 2.6050 12 1 9.8093 -2.2923 1.7264 13 6 9.6964 -3.0367 3.7342 14 7 8.8752 -3.5491 4.6230 15 14 11.5429 -3.1589 3.9888 16 1 12.1253 -1.7942 4.0513 17 1 11.8211 -3.8739 5.2602 18 1 12.1503 -3.9049 2.8576 19 6 7.2234 -1.6634 3.8752 20 6 6.3906 -2.8245 4.2287 21 7 5.7479 -3.7235 4.4981 22 16 2.5210 -1.4371 -0.0080 23 1 -0.3633 -0.0002 -1.0276 24 1 -0.3633 -0.8900 0.5139 25 1 -0.3634 0.8899 0.5138 26 1 1.8668 2.0895 0.0004 27 1 4.3720 1.6352 -0.0002 28 1 6.0384 -0.2713 -0.5163 29 1 5.4133 -1.9379 -0.5152 30 1 5.8378 -0.1946 1.9541 31 1 5.2126 -1.8611 1.9551 32 1 9.2280 -3.9904 5.4115 33 1 7.9622 -1.4942 4.6587 34 1 6.5920 -0.7805 3.7746 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000291446710.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:03:38 Heat of formation + Delta-G solvation = 4.959904 kcal Electronic energy + Delta-G solvation = -18539.328603 eV Core-core repulsion = 15563.419204 eV Total energy + Delta-G solvation = -2975.909399 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 278.083 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.69147 -38.93935 -37.60812 -36.19511 -34.94115 -33.72973 -31.83209 -29.22387 -28.21473 -26.37984 -24.51385 -23.30091 -20.74291 -19.73698 -19.64502 -18.29172 -18.10404 -17.48351 -16.55881 -16.11413 -15.97948 -15.84675 -14.95611 -14.69711 -14.60694 -14.42905 -13.96626 -13.84767 -13.59418 -13.37141 -13.34566 -13.15717 -12.92729 -12.86456 -12.47723 -12.40578 -12.33295 -12.15187 -12.09667 -11.84840 -11.52290 -11.10289 -10.44729 -9.90900 -9.39720 -9.29359 -8.40089 -5.97623 0.10476 0.71245 1.14653 1.41309 1.48603 1.57579 1.80474 1.89528 2.07185 2.25025 2.36222 3.00287 3.11138 3.59339 3.78684 4.04331 4.09063 4.15181 4.29024 4.47430 4.52353 4.64697 4.76416 4.77837 4.83142 4.87060 4.98349 5.12619 5.16325 5.34838 5.44187 5.48813 5.71961 6.04992 6.40011 7.01161 7.12409 7.35615 7.92687 8.63627 Molecular weight = 278.08amu Principal moments of inertia in cm(-1) A = 0.032351 B = 0.004069 C = 0.003804 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 865.286826 B = 6880.379346 C = 7358.212696 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 C -0.182 4.182 3 C -0.144 4.144 4 C -0.131 4.131 5 C -0.183 4.183 6 C -0.022 4.022 7 C -0.116 4.116 8 C 0.450 3.550 9 O -0.616 6.616 10 N -0.455 5.455 11 C -0.344 4.344 12 H 0.083 0.917 13 C 0.006 3.994 14 N -0.893 5.893 15 Si 0.986 3.014 16 H -0.258 1.258 17 H -0.281 1.281 18 H -0.283 1.283 19 C 0.222 3.778 20 C 0.257 3.743 21 N -0.508 5.508 22 S 0.050 5.950 23 H 0.084 0.916 24 H 0.067 0.933 25 H 0.094 0.906 26 H 0.164 0.836 27 H 0.158 0.842 28 H 0.089 0.911 29 H 0.054 0.946 30 H 0.122 0.878 31 H 0.076 0.924 32 H 0.274 0.726 33 H 0.122 0.878 34 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.891 12.514 -3.749 18.353 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.299 4.299 3 C -0.174 4.174 4 C -0.161 4.161 5 C -0.300 4.300 6 C -0.061 4.061 7 C -0.157 4.157 8 C 0.240 3.760 9 O -0.501 6.501 10 N -0.175 5.175 11 C -0.472 4.472 12 H 0.100 0.900 13 C -0.196 4.196 14 N -0.531 5.531 15 Si 0.811 3.189 16 H -0.183 1.183 17 H -0.206 1.206 18 H -0.209 1.209 19 C 0.096 3.904 20 C -0.061 4.061 21 N -0.189 5.189 22 S 0.313 5.687 23 H 0.102 0.898 24 H 0.086 0.914 25 H 0.113 0.887 26 H 0.182 0.818 27 H 0.175 0.825 28 H 0.108 0.892 29 H 0.073 0.927 30 H 0.140 0.860 31 H 0.095 0.905 32 H 0.084 0.916 33 H 0.140 0.860 34 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -13.819 9.429 -3.683 17.130 hybrid contribution 1.732 0.869 0.147 1.944 sum -12.086 10.298 -3.536 16.268 Atomic orbital electron populations 1.20429 0.85982 1.03993 1.03576 1.24870 1.01069 0.94669 1.09307 1.20341 0.92419 1.00199 1.04399 1.20391 0.97222 0.95579 1.02889 1.24383 0.97656 0.96926 1.11048 1.19656 0.89479 1.01251 0.95740 1.21572 0.91794 1.03529 0.98775 1.21046 0.88884 0.82615 0.83428 1.90513 1.69257 1.58189 1.32184 1.43809 1.12938 1.56969 1.03789 1.19594 0.88311 1.37533 1.01731 0.89956 1.25914 1.03893 0.93915 0.95907 1.69924 1.36354 1.34074 1.12746 0.85092 0.77825 0.78961 0.77053 1.18264 1.20577 1.20912 1.19047 0.93853 0.88953 0.88586 1.29847 0.90100 0.94566 0.91590 1.80954 1.16551 1.11089 1.10332 1.84563 0.98076 1.11618 1.74397 0.89777 0.91355 0.88727 0.81823 0.82495 0.89236 0.92725 0.86040 0.90527 0.91610 0.85981 0.84278 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.11 10.38 71.24 0.74 -0.37 16 2 C -0.18 -3.70 6.51 24.59 0.16 -3.54 16 3 C -0.14 -2.76 10.05 21.22 0.21 -2.54 16 4 C -0.13 -2.87 10.05 21.21 0.21 -2.66 16 5 C -0.18 -4.89 5.76 24.59 0.14 -4.75 16 6 C -0.02 -0.68 5.00 29.85 0.15 -0.53 16 7 C -0.12 -3.83 4.29 29.85 0.13 -3.70 16 8 C 0.45 20.07 7.56 87.66 0.66 20.73 16 9 O -0.62 -32.44 15.65 -3.09 -0.05 -32.49 16 10 N -0.46 -20.94 2.60 -645.41 -1.68 -22.61 16 11 C -0.34 -17.87 9.27 84.04 0.78 -17.09 16 12 H 0.08 4.60 7.43 -2.91 -0.02 4.58 16 13 C 0.01 0.30 4.84 84.93 0.41 0.71 16 14 N -0.89 -44.92 9.58 21.66 0.21 -44.71 16 15 Si 0.99 39.99 29.60 68.60 2.03 42.02 16 16 H -0.26 -9.87 7.11 99.48 0.71 -9.16 16 17 H -0.28 -11.11 7.11 99.48 0.71 -10.40 16 18 H -0.28 -11.91 7.11 99.48 0.71 -11.20 16 19 C 0.22 8.37 4.91 84.57 0.42 8.78 16 20 C 0.26 11.14 12.82 89.42 1.15 12.29 16 21 N -0.51 -24.21 18.55 20.02 0.37 -23.84 16 22 S 0.05 1.29 23.31 -56.49 -1.32 -0.02 16 23 H 0.08 0.97 8.14 -2.39 -0.02 0.95 16 24 H 0.07 0.94 8.14 -2.39 -0.02 0.92 16 25 H 0.09 0.94 8.14 -2.39 -0.02 0.93 16 26 H 0.16 2.17 8.06 -2.91 -0.02 2.14 16 27 H 0.16 2.82 8.06 -2.91 -0.02 2.80 16 28 H 0.09 2.76 8.10 -2.38 -0.02 2.74 16 29 H 0.05 1.94 8.10 -2.38 -0.02 1.93 16 30 H 0.12 3.09 7.42 -2.39 -0.02 3.07 16 31 H 0.08 2.61 7.49 -2.38 -0.02 2.59 16 32 H 0.27 13.37 8.31 -92.71 -0.77 12.60 16 33 H 0.12 4.69 6.63 -2.38 -0.02 4.67 16 34 H 0.14 3.67 6.69 -2.38 -0.02 3.65 16 Total: -1.00 -67.38 312.77 5.85 -61.53 By element: Atomic # 1 Polarization: 11.69 SS G_CDS: 1.12 Total: 12.81 kcal Atomic # 6 Polarization: 2.16 SS G_CDS: 5.16 Total: 7.32 kcal Atomic # 7 Polarization: -90.07 SS G_CDS: -1.10 Total: -91.17 kcal Atomic # 8 Polarization: -32.44 SS G_CDS: -0.05 Total: -32.49 kcal Atomic # 14 Polarization: 39.99 SS G_CDS: 2.03 Total: 42.02 kcal Atomic # 16 Polarization: 1.29 SS G_CDS: -1.32 Total: -0.02 kcal Total: -67.38 5.85 -61.53 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000291446710.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.492 kcal (2) G-P(sol) polarization free energy of solvation -67.378 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.886 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.846 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.532 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.960 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds