Wall clock time and date at job start Tue Mar 31 2020 01:05:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.33814 * 122.44760 * 2 1 4 4 S 1.70626 * 110.95064 * 179.78062 * 3 2 1 5 5 C 1.75826 * 91.56305 * 0.30586 * 4 3 2 6 6 C 1.46579 * 125.45744 * 179.97438 * 5 4 3 7 7 O 1.21702 * 120.00554 * 186.46840 * 6 5 4 8 8 N 1.34775 * 120.00115 * 6.46501 * 6 5 4 9 9 C 1.46503 * 119.99700 * 5.65582 * 8 6 5 10 10 C 1.50697 * 109.46847 * 274.55931 * 9 8 6 11 11 H 1.07997 * 120.00511 * 0.02562 * 10 9 8 12 12 C 1.37882 * 119.99696 * 180.02562 * 10 9 8 13 13 N 1.31520 * 119.99902 * 179.97438 * 12 10 9 14 14 Si 1.86800 * 120.00199 * 0.02562 * 12 10 9 15 15 H 1.48496 * 109.47369 * 89.99574 * 14 12 10 16 16 H 1.48502 * 109.47051 * 210.00336 * 14 12 10 17 17 H 1.48510 * 109.46931 * 329.99848 * 14 12 10 18 18 C 1.46508 * 120.00221 * 185.65351 * 8 6 5 19 19 C 1.52995 * 109.47066 * 269.27183 * 18 8 6 20 20 C 1.47201 * 109.47100 * 180.02562 * 19 18 8 21 21 N 9.22232 * 145.38311 * 167.08621 * 2 1 3 22 22 C 1.36652 * 109.08774 * 359.69829 * 5 4 3 23 23 H 1.08997 * 109.47017 * 269.97807 * 1 2 3 24 24 H 1.08999 * 109.46835 * 29.97917 * 1 2 3 25 25 H 1.09002 * 109.46970 * 149.97890 * 1 2 3 26 26 H 1.07999 * 124.52573 * 0.02562 * 3 2 1 27 27 H 1.08998 * 109.47144 * 34.56025 * 9 8 6 28 28 H 1.09009 * 109.46964 * 154.56353 * 9 8 6 29 29 H 0.96994 * 119.99592 * 179.97438 * 13 12 10 30 30 H 1.09001 * 109.46769 * 29.27489 * 18 8 6 31 31 H 1.08998 * 109.47023 * 149.27219 * 18 8 6 32 32 H 1.09003 * 109.47657 * 300.00344 * 19 18 8 33 33 H 1.09005 * 109.47155 * 59.99769 * 19 18 8 34 34 H 1.07994 * 123.35690 * 180.25001 * 22 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2250 1.1292 0.0000 4 16 3.8970 0.7892 0.0061 5 6 3.5937 -0.9427 -0.0007 6 6 4.6231 -1.9863 -0.0001 7 8 4.3055 -3.1546 -0.1239 8 7 5.9215 -1.6520 0.1374 9 6 6.2950 -0.2619 0.4101 10 6 6.3969 0.4949 -0.8890 11 1 6.2024 -0.0089 -1.8243 12 6 6.7384 1.8308 -0.8837 13 7 6.8278 2.4912 -2.0175 14 14 7.0755 2.7022 0.7338 15 1 8.5181 2.5875 1.0667 16 1 6.7085 4.1358 0.6096 17 1 6.2676 2.0760 1.8112 18 6 6.9593 -2.6787 0.0142 19 6 7.2491 -3.2788 1.3914 20 6 8.2923 -4.3099 1.2678 21 7 9.0967 -5.1066 1.1709 22 6 2.2446 -1.1602 -0.0004 23 1 -0.3633 -0.0004 1.0276 24 1 -0.3633 0.8902 -0.5135 25 1 -0.3633 -0.8898 -0.5142 26 1 1.8026 2.1232 0.0004 27 1 5.5368 0.2009 1.0417 28 1 7.2577 -0.2379 0.9210 29 1 7.0677 3.4310 -2.0137 30 1 6.6155 -3.4639 -0.6592 31 1 7.8688 -2.2300 -0.3853 32 1 7.5928 -2.4936 2.0649 33 1 6.3396 -3.7275 1.7909 34 1 1.8019 -2.1452 -0.0001 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000293649417.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:05:05 Heat of formation + Delta-G solvation = 6.957224 kcal Electronic energy + Delta-G solvation = -19115.857352 eV Core-core repulsion = 16140.034564 eV Total energy + Delta-G solvation = -2975.822788 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 278.083 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.90066 -38.82613 -37.84841 -36.85390 -34.79468 -33.09686 -31.38596 -29.77931 -28.40659 -26.30632 -24.76287 -23.58597 -20.49808 -19.76594 -19.21141 -18.62903 -18.45211 -17.19928 -16.81353 -16.31979 -15.80567 -15.67447 -15.44723 -14.76513 -14.70796 -14.41673 -14.24314 -13.96286 -13.75624 -13.60516 -13.55589 -13.12868 -12.88397 -12.80110 -12.61734 -12.60060 -12.37375 -12.04118 -11.79103 -11.70089 -11.02207 -10.91343 -10.68850 -9.75647 -9.36340 -8.97680 -8.29021 -6.28057 -0.16297 0.96321 1.42044 1.48756 1.53890 1.55175 1.57448 1.67736 1.79401 2.15838 2.35519 2.37664 3.08247 3.16176 3.73905 4.09983 4.16258 4.28975 4.46588 4.53147 4.59835 4.62569 4.80221 4.83669 4.85140 4.94264 5.03501 5.14487 5.19255 5.35636 5.59560 5.66869 5.76620 6.14290 6.48093 6.55998 6.70276 7.17266 7.27588 8.85251 Molecular weight = 278.08amu Principal moments of inertia in cm(-1) A = 0.012533 B = 0.008439 C = 0.005473 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2233.567085 B = 3317.084016 C = 5114.672524 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.087 4.087 2 C -0.140 4.140 3 C -0.320 4.320 4 S 0.331 5.669 5 C -0.311 4.311 6 C 0.591 3.409 7 O -0.578 6.578 8 N -0.590 5.590 9 C 0.193 3.807 10 C -0.528 4.528 11 H 0.042 0.958 12 C 0.049 3.951 13 N -0.921 5.921 14 Si 0.894 3.106 15 H -0.259 1.259 16 H -0.283 1.283 17 H -0.219 1.219 18 C 0.124 3.876 19 C -0.032 4.032 20 C 0.245 3.755 21 N -0.490 5.490 22 C -0.072 4.072 23 H 0.077 0.923 24 H 0.069 0.931 25 H 0.068 0.932 26 H 0.169 0.831 27 H 0.052 0.948 28 H 0.075 0.925 29 H 0.271 0.729 30 H 0.075 0.925 31 H 0.097 0.903 32 H 0.141 0.859 33 H 0.121 0.879 34 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.796 -0.440 9.100 11.366 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.152 4.152 3 C -0.457 4.457 4 S 0.610 5.390 5 C -0.432 4.432 6 C 0.381 3.619 7 O -0.462 6.462 8 N -0.319 5.319 9 C 0.069 3.931 10 C -0.571 4.571 11 H 0.060 0.940 12 C -0.154 4.154 13 N -0.558 5.558 14 Si 0.715 3.285 15 H -0.183 1.183 16 H -0.208 1.208 17 H -0.141 1.141 18 C -0.001 4.001 19 C -0.073 4.073 20 C -0.072 4.072 21 N -0.168 5.168 22 C -0.108 4.108 23 H 0.095 0.905 24 H 0.088 0.912 25 H 0.087 0.913 26 H 0.186 0.814 27 H 0.070 0.930 28 H 0.093 0.907 29 H 0.081 0.919 30 H 0.093 0.907 31 H 0.115 0.885 32 H 0.159 0.841 33 H 0.139 0.861 34 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -4.446 -1.087 8.840 9.955 hybrid contribution -1.272 0.180 -0.168 1.296 sum -5.718 -0.907 8.672 10.427 Atomic orbital electron populations 1.20502 0.88419 1.02925 1.02744 1.18838 0.98689 0.90998 1.06680 1.26707 1.06087 1.03586 1.09338 1.85779 0.96288 0.96173 1.60749 1.24649 0.97938 0.99046 1.21561 1.17190 0.82284 0.86915 0.75466 1.90708 1.82209 1.19743 1.53514 1.47670 1.04758 1.09927 1.69538 1.20140 0.98483 0.78048 0.96395 1.21349 1.47219 0.95444 0.93074 0.93964 1.25484 0.93371 0.97524 0.99021 1.70004 1.46972 1.10541 1.28302 0.86462 0.81088 0.79109 0.81806 1.18342 1.20846 1.14114 1.21291 0.91761 0.91010 0.95998 1.19742 0.93796 0.93618 1.00106 1.29225 0.93089 0.93172 0.91735 1.81237 1.12928 1.12671 1.10002 1.20585 0.90891 0.99916 0.99421 0.90483 0.91180 0.91269 0.81351 0.93049 0.90671 0.91923 0.90675 0.88483 0.84106 0.86142 0.83755 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.93 10.13 71.24 0.72 -1.21 16 2 C -0.14 -4.24 5.78 -21.05 -0.12 -4.36 16 3 C -0.32 -10.15 10.67 66.81 0.71 -9.44 16 4 S 0.33 12.23 15.03 -56.49 -0.85 11.38 16 5 C -0.31 -11.75 6.19 24.08 0.15 -11.60 16 6 C 0.59 22.88 7.59 86.42 0.66 23.54 16 7 O -0.58 -24.10 16.48 -4.36 -0.07 -24.17 16 8 N -0.59 -20.48 2.47 -830.97 -2.05 -22.53 16 9 C 0.19 6.95 3.79 85.63 0.32 7.28 16 10 C -0.53 -24.04 7.17 25.60 0.18 -23.86 16 11 H 0.04 2.30 8.06 -2.91 -0.02 2.27 16 12 C 0.05 2.31 4.94 84.66 0.42 2.73 16 13 N -0.92 -48.63 13.96 21.45 0.30 -48.33 16 14 Si 0.89 33.53 26.91 68.60 1.85 35.38 16 15 H -0.26 -9.42 7.11 99.48 0.71 -8.71 16 16 H -0.28 -10.93 7.11 99.48 0.71 -10.22 16 17 H -0.22 -7.01 6.54 99.48 0.65 -6.36 16 18 C 0.12 3.52 5.31 86.38 0.46 3.98 16 19 C -0.03 -0.67 6.03 28.79 0.17 -0.49 16 20 C 0.24 6.18 15.43 89.44 1.38 7.56 16 21 N -0.49 -15.16 18.54 20.01 0.37 -14.79 16 22 C -0.07 -2.47 9.80 21.72 0.21 -2.25 16 23 H 0.08 1.46 8.14 -2.39 -0.02 1.44 16 24 H 0.07 1.39 8.12 -2.39 -0.02 1.37 16 25 H 0.07 1.40 8.13 -2.39 -0.02 1.38 16 26 H 0.17 4.53 8.06 -2.91 -0.02 4.51 16 27 H 0.05 1.83 3.99 -19.02 -0.08 1.76 16 28 H 0.08 2.33 7.46 -2.38 -0.02 2.32 16 29 H 0.27 13.51 8.31 -92.71 -0.77 12.74 16 30 H 0.07 2.32 7.48 -2.39 -0.02 2.30 16 31 H 0.10 2.66 8.08 -2.39 -0.02 2.64 16 32 H 0.14 2.20 8.14 -2.39 -0.02 2.18 16 33 H 0.12 2.46 8.14 -2.38 -0.02 2.44 16 34 H 0.14 4.60 8.06 -2.91 -0.02 4.58 16 Total: -1.00 -60.36 307.13 5.81 -54.54 By element: Atomic # 1 Polarization: 15.65 SS G_CDS: 1.00 Total: 16.65 kcal Atomic # 6 Polarization: -13.40 SS G_CDS: 5.27 Total: -8.13 kcal Atomic # 7 Polarization: -84.26 SS G_CDS: -1.38 Total: -85.64 kcal Atomic # 8 Polarization: -24.10 SS G_CDS: -0.07 Total: -24.17 kcal Atomic # 14 Polarization: 33.53 SS G_CDS: 1.85 Total: 35.38 kcal Atomic # 16 Polarization: 12.23 SS G_CDS: -0.85 Total: 11.38 kcal Total: -60.36 5.81 -54.54 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000293649417.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.502 kcal (2) G-P(sol) polarization free energy of solvation -60.356 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.147 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.811 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.545 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.957 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds