Wall clock time and date at job start Tue Mar 31 2020 00:41:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13606 * 1 3 3 C 1.47198 * 179.97438 * 2 1 4 4 N 1.46501 * 109.47111 * 89.79932 * 3 2 1 5 5 C 1.37102 * 119.99658 * 264.22459 * 4 3 2 6 6 H 1.07995 * 120.00201 * 197.72563 * 5 4 3 7 7 C 1.38954 * 119.99906 * 17.72423 * 5 4 3 8 8 N 1.31414 * 119.99589 * 21.40193 * 7 5 4 9 9 Si 1.86798 * 120.00020 * 201.39126 * 7 5 4 10 10 H 1.48503 * 109.46538 * 60.00633 * 9 7 5 11 11 H 1.48500 * 109.47175 * 180.02562 * 9 7 5 12 12 H 1.48492 * 109.47324 * 300.00414 * 9 7 5 13 13 C 1.34773 * 120.00160 * 84.22844 * 4 3 2 14 14 O 1.21296 * 119.99726 * 179.97438 * 13 4 3 15 15 C 1.50699 * 120.00082 * 0.02562 * 13 4 3 16 16 C 1.53003 * 109.47061 * 179.97438 * 15 13 4 17 17 C 1.52993 * 109.47391 * 179.97438 * 16 15 13 18 18 C 1.50698 * 109.47477 * 179.97438 * 17 16 15 19 19 C 1.33396 * 125.19950 * 90.00548 * 18 17 16 20 20 C 1.38423 * 114.91688 * 179.97438 * 19 18 17 21 21 C 1.33383 * 114.92379 * 359.97438 * 20 19 18 22 22 S 1.75880 * 125.20600 * 269.69735 * 18 17 16 23 23 H 1.08992 * 109.47462 * 329.79151 * 3 2 1 24 24 H 1.09004 * 109.46770 * 209.79486 * 3 2 1 25 25 H 0.97003 * 119.99363 * 179.97438 * 8 7 5 26 26 H 1.08992 * 109.47376 * 59.99743 * 15 13 4 27 27 H 1.09000 * 109.46593 * 299.99641 * 15 13 4 28 28 H 1.09005 * 109.46987 * 59.99379 * 16 15 13 29 29 H 1.08999 * 109.47216 * 300.00122 * 16 15 13 30 30 H 1.09005 * 109.47179 * 59.99965 * 17 16 15 31 31 H 1.08999 * 109.47422 * 300.00464 * 17 16 15 32 32 H 1.07997 * 122.53783 * 359.95414 * 19 18 17 33 33 H 1.08006 * 122.53423 * 180.02562 * 20 19 18 34 34 H 1.07996 * 125.20185 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1361 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 7 3.0964 -0.0040 -1.3812 5 6 3.4380 -1.1873 -1.9835 6 1 4.0544 -1.1836 -2.8703 7 6 2.9913 -2.3913 -1.4529 8 7 1.9378 -2.4125 -0.6675 9 14 3.8879 -3.9796 -1.8562 10 1 5.2958 -3.8843 -1.3937 11 1 3.2173 -5.1141 -1.1717 12 1 3.8630 -4.2032 -3.3239 13 6 3.2098 1.1550 -2.0598 14 8 3.6146 1.1511 -3.2032 15 6 2.8349 2.4557 -1.3975 16 6 3.0561 3.6094 -2.3778 17 6 2.6749 4.9299 -1.7058 18 6 2.8933 6.0663 -2.6711 19 6 1.9825 6.5353 -3.5255 20 6 2.4114 7.5879 -4.3155 21 6 3.6702 7.9740 -4.1024 22 16 4.3855 6.9821 -2.8383 23 1 2.9718 -0.8872 0.5170 24 1 2.9709 0.8927 0.5107 25 1 1.6257 -3.2531 -0.2974 26 1 3.4556 2.6059 -0.5143 27 1 1.7858 2.4244 -1.1034 28 1 2.4356 3.4594 -3.2615 29 1 4.1052 3.6405 -2.6717 30 1 3.2950 5.0801 -0.8220 31 1 1.6256 4.8986 -1.4122 32 1 0.9861 6.1246 -3.5956 33 1 1.7747 8.0612 -5.0484 34 1 4.1722 8.7758 -4.6236 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000293900096.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:41:15 Heat of formation + Delta-G solvation = 22.900554 kcal Electronic energy + Delta-G solvation = -18400.077364 eV Core-core repulsion = 15424.945930 eV Total energy + Delta-G solvation = -2975.131434 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 278.083 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -38.94375 -37.96794 -35.87635 -34.65772 -34.09463 -31.88158 -30.18590 -27.50331 -26.76566 -24.78097 -23.27811 -21.48814 -19.26632 -18.99166 -17.90191 -17.14587 -16.44514 -16.12061 -15.55227 -14.99545 -14.62909 -14.24589 -13.56180 -13.45569 -13.13773 -12.97176 -12.76444 -12.42360 -12.39284 -11.96114 -11.73475 -11.59153 -11.39613 -11.26174 -11.12544 -10.99939 -10.78482 -10.58207 -10.44037 -10.37667 -10.24481 -9.24629 -8.66344 -8.54383 -8.49429 -8.03450 -6.49967 -3.99021 0.98533 1.61707 1.98503 2.73153 3.12722 3.22081 3.24564 3.56687 3.81054 3.97884 4.12254 4.65350 4.86102 4.90986 5.00772 5.13976 5.21299 5.38604 5.39247 5.53614 5.62486 5.71304 5.84846 5.91150 5.98575 6.10183 6.18674 6.29539 6.41773 6.50209 6.54056 6.64967 7.47700 7.91872 8.29424 8.73506 9.01757 9.21177 9.76085 10.56283 Molecular weight = 278.08amu Principal moments of inertia in cm(-1) A = 0.030507 B = 0.003620 C = 0.003397 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 917.615172 B = 7732.229592 C = 8240.805471 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.474 5.474 2 C 0.247 3.753 3 C 0.222 3.778 4 N -0.446 5.446 5 C -0.315 4.315 6 H 0.107 0.893 7 C 0.032 3.968 8 N -0.879 5.879 9 Si 0.927 3.073 10 H -0.272 1.272 11 H -0.285 1.285 12 H -0.273 1.273 13 C 0.455 3.545 14 O -0.573 6.573 15 C -0.136 4.136 16 C -0.092 4.092 17 C -0.054 4.054 18 C -0.156 4.156 19 C -0.149 4.149 20 C -0.130 4.130 21 C -0.225 4.225 22 S 0.091 5.909 23 H 0.127 0.873 24 H 0.084 0.916 25 H 0.273 0.727 26 H 0.082 0.918 27 H 0.079 0.921 28 H 0.071 0.929 29 H 0.070 0.930 30 H 0.074 0.926 31 H 0.082 0.918 32 H 0.139 0.861 33 H 0.137 0.863 34 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.031 15.775 1.415 16.343 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.154 5.154 2 C -0.072 4.072 3 C 0.094 3.906 4 N -0.166 5.166 5 C -0.442 4.442 6 H 0.125 0.875 7 C -0.172 4.172 8 N -0.518 5.518 9 Si 0.753 3.247 10 H -0.197 1.197 11 H -0.210 1.210 12 H -0.198 1.198 13 C 0.244 3.756 14 O -0.456 6.456 15 C -0.177 4.177 16 C -0.131 4.131 17 C -0.093 4.093 18 C -0.273 4.273 19 C -0.179 4.179 20 C -0.161 4.161 21 C -0.360 4.360 22 S 0.354 5.646 23 H 0.144 0.856 24 H 0.102 0.898 25 H 0.084 0.916 26 H 0.100 0.900 27 H 0.097 0.903 28 H 0.089 0.911 29 H 0.089 0.911 30 H 0.093 0.907 31 H 0.101 0.899 32 H 0.157 0.843 33 H 0.154 0.846 34 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges 3.879 15.577 1.624 16.135 hybrid contribution -0.778 -0.941 -0.869 1.499 sum 3.101 14.636 0.755 14.980 Atomic orbital electron populations 1.80898 1.13628 1.12367 1.08553 1.29342 0.95391 0.90028 0.92409 1.18730 0.81573 1.03653 0.86656 1.43660 1.56773 1.06359 1.09826 1.19677 1.30046 0.81461 1.12993 0.87489 1.25264 0.95002 0.99647 0.97266 1.69855 1.19893 1.28298 1.33719 0.85975 0.79490 0.80268 0.78927 1.19712 1.21041 1.19847 1.20177 0.83633 0.85018 0.86739 1.90546 1.50131 1.86875 1.18040 1.21626 1.02441 0.94066 0.99529 1.21274 1.02993 0.90586 0.98249 1.20292 1.02736 0.90743 0.95519 1.24597 0.96401 1.02528 1.03816 1.20151 1.01202 0.98690 0.97854 1.20161 0.95767 0.98538 1.01628 1.25544 0.99209 1.06350 1.04908 1.84271 1.15912 1.28569 1.35809 0.85578 0.89809 0.91614 0.89974 0.90300 0.91074 0.91091 0.90699 0.89919 0.84320 0.84562 0.82223 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.47 -11.13 18.54 42.16 0.78 -10.35 16 2 C 0.25 5.35 12.95 -20.76 -0.27 5.08 16 3 C 0.22 4.29 4.91 -6.83 -0.03 4.25 16 4 N -0.45 -10.27 2.60 -117.93 -0.31 -10.57 16 5 C -0.31 -8.09 9.32 -14.93 -0.14 -8.23 16 6 H 0.11 2.91 7.39 -52.49 -0.39 2.53 16 7 C 0.03 0.78 4.87 -17.47 -0.08 0.69 16 8 N -0.88 -22.10 9.48 55.50 0.53 -21.58 16 9 Si 0.93 19.62 29.60 -169.99 -5.03 14.59 16 10 H -0.27 -5.60 7.11 56.52 0.40 -5.20 16 11 H -0.28 -6.01 7.11 56.52 0.40 -5.60 16 12 H -0.27 -5.94 7.11 56.52 0.40 -5.53 16 13 C 0.46 10.13 7.57 -10.99 -0.08 10.05 16 14 O -0.57 -14.89 15.63 5.54 0.09 -14.80 16 15 C -0.14 -2.22 4.30 -27.88 -0.12 -2.34 16 16 C -0.09 -1.41 4.49 -26.73 -0.12 -1.53 16 17 C -0.05 -0.64 5.71 -27.89 -0.16 -0.80 16 18 C -0.16 -1.92 5.76 -36.00 -0.21 -2.12 16 19 C -0.15 -1.76 10.05 -41.21 -0.41 -2.18 16 20 C -0.13 -1.38 10.18 -41.21 -0.42 -1.80 16 21 C -0.22 -2.30 11.23 29.04 0.33 -1.98 16 22 S 0.09 1.03 23.33 -107.50 -2.51 -1.48 16 23 H 0.13 2.51 6.46 -51.93 -0.34 2.18 16 24 H 0.08 1.21 6.68 -51.93 -0.35 0.86 16 25 H 0.27 6.69 8.31 -40.82 -0.34 6.35 16 26 H 0.08 1.09 7.42 -51.93 -0.39 0.70 16 27 H 0.08 1.26 7.51 -51.93 -0.39 0.87 16 28 H 0.07 1.21 8.10 -51.93 -0.42 0.79 16 29 H 0.07 1.15 8.10 -51.93 -0.42 0.73 16 30 H 0.07 0.79 8.14 -51.93 -0.42 0.36 16 31 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16 32 H 0.14 1.49 8.06 -52.49 -0.42 1.07 16 33 H 0.14 1.15 8.06 -52.48 -0.42 0.73 16 34 H 0.16 1.24 8.06 -52.49 -0.42 0.82 16 LS Contribution 312.25 15.07 4.71 4.71 Total: -1.00 -30.85 312.25 -7.41 -38.25 By element: Atomic # 1 Polarization: 6.08 SS G_CDS: -3.94 Total: 2.14 kcal Atomic # 6 Polarization: 0.82 SS G_CDS: -1.72 Total: -0.90 kcal Atomic # 7 Polarization: -43.50 SS G_CDS: 1.00 Total: -42.50 kcal Atomic # 8 Polarization: -14.89 SS G_CDS: 0.09 Total: -14.80 kcal Atomic # 14 Polarization: 19.62 SS G_CDS: -5.03 Total: 14.59 kcal Atomic # 16 Polarization: 1.03 SS G_CDS: -2.51 Total: -1.48 kcal Total LS contribution 4.71 Total: 4.71 kcal Total: -30.85 -7.41 -38.25 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000293900096.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.153 kcal (2) G-P(sol) polarization free energy of solvation -30.847 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.307 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.406 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.252 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.901 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds