Wall clock time and date at job start Tue Mar 31 2020 00:41:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13606 * 1 3 3 C 1.47198 * 179.97438 * 2 1 4 4 N 1.46501 * 109.47111 * 89.79932 * 3 2 1 5 5 C 1.37102 * 119.99658 * 264.22459 * 4 3 2 6 6 H 1.07995 * 120.00201 * 197.72563 * 5 4 3 7 7 C 1.38954 * 119.99906 * 17.72423 * 5 4 3 8 8 N 1.31414 * 119.99589 * 21.40193 * 7 5 4 9 9 Si 1.86798 * 120.00020 * 201.39126 * 7 5 4 10 10 H 1.48503 * 109.46538 * 60.00633 * 9 7 5 11 11 H 1.48500 * 109.47175 * 180.02562 * 9 7 5 12 12 H 1.48492 * 109.47324 * 300.00414 * 9 7 5 13 13 C 1.34773 * 120.00160 * 84.22844 * 4 3 2 14 14 O 1.21296 * 119.99726 * 179.97438 * 13 4 3 15 15 C 1.50699 * 120.00082 * 0.02562 * 13 4 3 16 16 C 1.53003 * 109.47061 * 179.97438 * 15 13 4 17 17 C 1.52993 * 109.47391 * 179.97438 * 16 15 13 18 18 C 1.50698 * 109.47477 * 179.97438 * 17 16 15 19 19 C 1.33396 * 125.19950 * 90.00548 * 18 17 16 20 20 C 1.38423 * 114.91688 * 179.97438 * 19 18 17 21 21 C 1.33383 * 114.92379 * 359.97438 * 20 19 18 22 22 S 1.75880 * 125.20600 * 269.69735 * 18 17 16 23 23 H 1.08992 * 109.47462 * 329.79151 * 3 2 1 24 24 H 1.09004 * 109.46770 * 209.79486 * 3 2 1 25 25 H 0.97003 * 119.99363 * 179.97438 * 8 7 5 26 26 H 1.08992 * 109.47376 * 59.99743 * 15 13 4 27 27 H 1.09000 * 109.46593 * 299.99641 * 15 13 4 28 28 H 1.09005 * 109.46987 * 59.99379 * 16 15 13 29 29 H 1.08999 * 109.47216 * 300.00122 * 16 15 13 30 30 H 1.09005 * 109.47179 * 59.99965 * 17 16 15 31 31 H 1.08999 * 109.47422 * 300.00464 * 17 16 15 32 32 H 1.07997 * 122.53783 * 359.95414 * 19 18 17 33 33 H 1.08006 * 122.53423 * 180.02562 * 20 19 18 34 34 H 1.07996 * 125.20185 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1361 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 7 3.0964 -0.0040 -1.3812 5 6 3.4380 -1.1873 -1.9835 6 1 4.0544 -1.1836 -2.8703 7 6 2.9913 -2.3913 -1.4529 8 7 1.9378 -2.4125 -0.6675 9 14 3.8879 -3.9796 -1.8562 10 1 5.2958 -3.8843 -1.3937 11 1 3.2173 -5.1141 -1.1717 12 1 3.8630 -4.2032 -3.3239 13 6 3.2098 1.1550 -2.0598 14 8 3.6146 1.1511 -3.2032 15 6 2.8349 2.4557 -1.3975 16 6 3.0561 3.6094 -2.3778 17 6 2.6749 4.9299 -1.7058 18 6 2.8933 6.0663 -2.6711 19 6 1.9825 6.5353 -3.5255 20 6 2.4114 7.5879 -4.3155 21 6 3.6702 7.9740 -4.1024 22 16 4.3855 6.9821 -2.8383 23 1 2.9718 -0.8872 0.5170 24 1 2.9709 0.8927 0.5107 25 1 1.6257 -3.2531 -0.2974 26 1 3.4556 2.6059 -0.5143 27 1 1.7858 2.4244 -1.1034 28 1 2.4356 3.4594 -3.2615 29 1 4.1052 3.6405 -2.6717 30 1 3.2950 5.0801 -0.8220 31 1 1.6256 4.8986 -1.4122 32 1 0.9861 6.1246 -3.5956 33 1 1.7747 8.0612 -5.0484 34 1 4.1722 8.7758 -4.6236 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000293900096.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:41:14 Heat of formation + Delta-G solvation = 5.909412 kcal Electronic energy + Delta-G solvation = -18400.814155 eV Core-core repulsion = 15424.945930 eV Total energy + Delta-G solvation = -2975.868225 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 278.083 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.64138 -38.85377 -37.61641 -36.24830 -35.49635 -33.73113 -31.32373 -29.15752 -27.97332 -26.34557 -24.36232 -22.63481 -20.63290 -20.09379 -19.71321 -18.30751 -18.01406 -17.64763 -16.52988 -16.47511 -16.12973 -15.91214 -14.97617 -14.70331 -14.57445 -14.43780 -13.91482 -13.67350 -13.58962 -13.34363 -13.28535 -13.13047 -12.91113 -12.59619 -12.49498 -12.34118 -12.26401 -12.11425 -12.01065 -11.68012 -11.46407 -11.09147 -10.38662 -9.90090 -9.49946 -9.34268 -8.39356 -5.94693 0.13326 0.78055 1.14964 1.41574 1.48423 1.57212 1.84787 1.89008 2.10044 2.28137 2.37214 3.01482 3.16017 3.63263 3.81685 3.96253 4.10541 4.27347 4.34095 4.45048 4.59650 4.65894 4.75213 4.78053 4.85416 4.92905 4.95626 5.16673 5.32952 5.42612 5.45789 5.49654 5.65288 6.06602 6.42852 7.03321 7.15102 7.39168 7.96993 8.64131 Molecular weight = 278.08amu Principal moments of inertia in cm(-1) A = 0.030507 B = 0.003620 C = 0.003397 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 917.615172 B = 7732.229592 C = 8240.805471 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.510 5.510 2 C 0.259 3.741 3 C 0.221 3.779 4 N -0.458 5.458 5 C -0.344 4.344 6 H 0.079 0.921 7 C 0.006 3.994 8 N -0.893 5.893 9 Si 0.984 3.016 10 H -0.260 1.260 11 H -0.279 1.279 12 H -0.285 1.285 13 C 0.446 3.554 14 O -0.621 6.621 15 C -0.125 4.125 16 C -0.084 4.084 17 C -0.044 4.044 18 C -0.179 4.179 19 C -0.158 4.158 20 C -0.143 4.143 21 C -0.221 4.221 22 S 0.083 5.917 23 H 0.122 0.878 24 H 0.143 0.857 25 H 0.274 0.726 26 H 0.124 0.876 27 H 0.088 0.912 28 H 0.043 0.957 29 H 0.056 0.944 30 H 0.095 0.905 31 H 0.093 0.907 32 H 0.144 0.856 33 H 0.157 0.843 34 H 0.185 0.815 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.457 16.885 2.588 17.654 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.191 5.191 2 C -0.059 4.059 3 C 0.095 3.905 4 N -0.178 5.178 5 C -0.471 4.471 6 H 0.097 0.903 7 C -0.196 4.196 8 N -0.531 5.531 9 Si 0.809 3.191 10 H -0.185 1.185 11 H -0.204 1.204 12 H -0.211 1.211 13 C 0.236 3.764 14 O -0.507 6.507 15 C -0.165 4.165 16 C -0.123 4.123 17 C -0.083 4.083 18 C -0.296 4.296 19 C -0.188 4.188 20 C -0.173 4.173 21 C -0.356 4.356 22 S 0.346 5.654 23 H 0.140 0.860 24 H 0.160 0.840 25 H 0.084 0.916 26 H 0.142 0.858 27 H 0.106 0.894 28 H 0.062 0.938 29 H 0.075 0.925 30 H 0.113 0.887 31 H 0.112 0.888 32 H 0.161 0.839 33 H 0.175 0.825 34 H 0.202 0.798 Dipole moment (debyes) X Y Z Total from point charges 4.298 16.697 2.831 17.472 hybrid contribution -0.912 -1.256 -1.311 2.031 sum 3.387 15.442 1.519 15.882 Atomic orbital electron populations 1.80904 1.14792 1.13726 1.09633 1.29801 0.95837 0.88896 0.91337 1.19095 0.80050 1.06330 0.85045 1.43851 1.56784 1.05893 1.11279 1.19573 1.30970 0.83342 1.13240 0.90275 1.25852 0.95172 1.01669 0.96898 1.69935 1.20276 1.28866 1.34055 0.85121 0.79076 0.77049 0.77861 1.18455 1.20408 1.21057 1.21254 0.82064 0.86646 0.86389 1.90514 1.51971 1.87834 1.20387 1.21632 1.03565 0.90678 1.00594 1.21156 1.01533 0.92212 0.97408 1.20198 1.03773 0.88603 0.95739 1.24715 0.97031 1.03264 1.04604 1.20426 1.01546 0.99006 0.97816 1.20428 0.96355 0.98481 1.02077 1.25906 0.99088 1.06394 1.04201 1.84252 1.15778 1.28829 1.36503 0.85999 0.83954 0.91594 0.85762 0.89362 0.93838 0.92549 0.88693 0.88825 0.83862 0.82515 0.79793 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.51 -23.44 18.54 20.01 0.37 -23.07 16 2 C 0.26 10.85 12.95 89.44 1.16 12.01 16 3 C 0.22 8.10 4.91 84.57 0.42 8.52 16 4 N -0.46 -20.88 2.60 -645.42 -1.68 -22.56 16 5 C -0.34 -17.90 9.32 84.04 0.78 -17.11 16 6 H 0.08 4.48 7.39 -2.91 -0.02 4.46 16 7 C 0.01 0.30 4.87 84.93 0.41 0.72 16 8 N -0.89 -44.36 9.48 21.66 0.21 -44.16 16 9 Si 0.98 40.08 29.60 68.60 2.03 42.12 16 10 H -0.26 -10.05 7.11 99.48 0.71 -9.34 16 11 H -0.28 -11.02 7.11 99.48 0.71 -10.32 16 12 H -0.28 -12.06 7.11 99.48 0.71 -11.36 16 13 C 0.45 19.71 7.57 87.66 0.66 20.37 16 14 O -0.62 -33.18 15.63 -3.08 -0.05 -33.23 16 15 C -0.12 -3.80 4.30 29.85 0.13 -3.68 16 16 C -0.08 -2.49 4.49 30.59 0.14 -2.36 16 17 C -0.04 -0.96 5.71 29.84 0.17 -0.79 16 18 C -0.18 -4.16 5.76 24.59 0.14 -4.02 16 19 C -0.16 -3.54 10.05 21.22 0.21 -3.33 16 20 C -0.14 -2.80 10.18 21.21 0.22 -2.58 16 21 C -0.22 -4.10 11.23 66.72 0.75 -3.35 16 22 S 0.08 1.76 23.33 -56.49 -1.32 0.44 16 23 H 0.12 4.64 6.46 -2.39 -0.02 4.62 16 24 H 0.14 3.50 6.68 -2.38 -0.02 3.48 16 25 H 0.27 13.20 8.31 -92.71 -0.77 12.43 16 26 H 0.12 2.76 7.42 -2.39 -0.02 2.74 16 27 H 0.09 2.59 7.51 -2.39 -0.02 2.57 16 28 H 0.04 1.50 8.10 -2.38 -0.02 1.48 16 29 H 0.06 1.81 8.10 -2.39 -0.02 1.79 16 30 H 0.09 1.70 8.14 -2.38 -0.02 1.68 16 31 H 0.09 1.84 8.14 -2.39 -0.02 1.82 16 32 H 0.14 2.96 8.06 -2.91 -0.02 2.93 16 33 H 0.16 2.31 8.06 -2.91 -0.02 2.29 16 34 H 0.18 2.38 8.06 -2.91 -0.02 2.36 16 Total: -1.00 -68.29 312.25 5.87 -62.42 By element: Atomic # 1 Polarization: 12.53 SS G_CDS: 1.11 Total: 13.65 kcal Atomic # 6 Polarization: -0.80 SS G_CDS: 5.19 Total: 4.39 kcal Atomic # 7 Polarization: -88.69 SS G_CDS: -1.10 Total: -89.79 kcal Atomic # 8 Polarization: -33.18 SS G_CDS: -0.05 Total: -33.23 kcal Atomic # 14 Polarization: 40.08 SS G_CDS: 2.03 Total: 42.12 kcal Atomic # 16 Polarization: 1.76 SS G_CDS: -1.32 Total: 0.44 kcal Total: -68.29 5.87 -62.42 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000293900096.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.332 kcal (2) G-P(sol) polarization free energy of solvation -68.289 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.043 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.866 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.422 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.909 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds