Wall clock time and date at job start Tue Mar 31 2020 00:35:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31626 * 1 3 3 Si 1.86797 * 120.00216 * 2 1 4 4 H 1.48494 * 109.47501 * 179.97438 * 3 2 1 5 5 H 1.48505 * 109.47140 * 300.00023 * 3 2 1 6 6 H 1.48505 * 109.47072 * 59.99469 * 3 2 1 7 7 C 1.38801 * 119.99925 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99743 * 180.02562 * 7 2 1 9 9 S 1.76206 * 120.00023 * 359.97438 * 7 2 1 10 10 C 1.81002 * 99.99667 * 179.97438 * 9 7 2 11 11 C 1.50706 * 109.46554 * 179.97438 * 10 9 7 12 12 O 1.21277 * 120.00408 * 0.02562 * 11 10 9 13 13 N 1.34775 * 119.99625 * 179.72435 * 11 10 9 14 14 C 1.39403 * 120.00126 * 175.05564 * 13 11 10 15 15 C 1.39038 * 119.69025 * 185.04129 * 14 13 11 16 16 C 1.38290 * 118.93445 * 179.97438 * 15 14 13 17 17 C 1.38945 * 118.65885 * 359.97438 * 16 15 14 18 18 C 1.38074 * 119.46270 * 359.97438 * 17 16 15 19 19 N 1.32181 * 119.68445 * 4.76626 * 14 13 11 20 20 C 1.51494 * 109.60638 * 179.97438 * 18 17 16 21 21 C 1.54335 * 105.20828 * 342.79329 * 20 18 17 22 22 C 1.51251 * 130.57948 * 179.97438 * 17 16 15 23 23 H 0.96995 * 120.00398 * 359.97438 * 1 2 3 24 24 H 1.09004 * 109.46739 * 60.00709 * 10 9 7 25 25 H 1.08990 * 109.47355 * 300.00024 * 10 9 7 26 26 H 0.96996 * 120.00263 * 355.05981 * 13 11 10 27 27 H 1.07997 * 120.53329 * 0.02562 * 15 14 13 28 28 H 1.08000 * 120.66972 * 180.02562 * 16 15 14 29 29 H 1.09003 * 110.29939 * 223.86395 * 20 18 17 30 30 H 1.09001 * 110.37734 * 101.77009 * 20 18 17 31 31 H 1.08995 * 110.82515 * 268.12066 * 21 20 18 32 32 H 1.09002 * 110.99704 * 144.63925 * 21 20 18 33 33 H 1.09002 * 110.31498 * 316.09153 * 22 17 16 34 34 H 1.08997 * 110.31789 * 78.17616 * 22 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.7103 1.3464 0.0006 5 1 1.8916 2.3964 -1.2125 6 1 1.8915 2.3965 1.2125 7 6 2.0102 -1.2021 0.0005 8 1 3.0902 -1.2020 0.0010 9 16 1.1292 -2.7280 0.0019 10 6 2.5158 -3.8914 0.0013 11 6 1.9873 -5.3028 0.0030 12 8 0.7910 -5.5023 0.0040 13 7 2.8440 -6.3431 -0.0027 14 6 2.3592 -7.6459 0.1029 15 6 3.2522 -8.7070 0.2023 16 6 2.7542 -9.9929 0.3068 17 6 1.3769 -10.1760 0.3091 18 6 0.5457 -9.0781 0.2083 19 7 1.0550 -7.8602 0.1131 20 6 -0.8998 -9.5310 0.2322 21 6 -0.8561 -11.0413 -0.0822 22 6 0.5525 -11.4403 0.4082 23 1 -0.4850 0.8400 0.0004 24 1 3.1250 -3.7310 0.8909 25 1 3.1237 -3.7318 -0.8891 26 1 3.7979 -6.1855 -0.0802 27 1 4.3175 -8.5298 0.1987 28 1 3.4224 -10.8377 0.3859 29 1 -1.4742 -9.0029 -0.5290 30 1 -1.3342 -9.3623 1.2176 31 1 -0.9589 -11.2174 -1.1529 32 1 -1.6255 -11.5782 0.4728 33 1 0.9705 -12.2158 -0.2337 34 1 0.5123 -11.7859 1.4411 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000297211996.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:35:44 Heat of formation + Delta-G solvation = 7.043547 kcal Electronic energy + Delta-G solvation = -18150.803145 eV Core-core repulsion = 15174.984100 eV Total energy + Delta-G solvation = -2975.819045 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 278.083 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.94108 -39.12913 -36.44595 -33.89826 -32.64127 -32.43736 -29.85806 -28.27100 -27.49671 -25.49980 -23.73580 -21.91161 -20.96464 -20.40365 -18.01152 -17.33304 -16.78660 -15.96941 -15.76558 -15.23823 -15.00924 -14.81327 -14.31492 -13.77105 -13.60952 -13.28792 -13.05429 -12.94267 -12.58795 -12.41047 -12.12524 -11.82017 -11.34427 -11.27339 -11.07355 -11.02928 -10.77630 -10.21110 -9.83552 -9.79368 -9.69052 -9.08111 -8.74836 -8.24963 -8.02464 -6.51422 -6.22494 -3.93400 1.07627 1.32024 2.81264 3.05313 3.21355 3.24555 3.30545 3.52466 3.87893 4.02995 4.19050 4.35124 4.68490 4.81613 4.89571 4.90249 5.07048 5.12682 5.12818 5.36437 5.51779 5.56575 5.59073 5.64952 5.77290 5.83702 5.88243 5.95224 5.99384 6.08828 6.16218 6.33513 6.83695 7.32399 7.59181 8.17726 8.34527 8.59557 9.22815 10.84993 Molecular weight = 278.08amu Principal moments of inertia in cm(-1) A = 0.043974 B = 0.003303 C = 0.003086 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 636.586417 B = 8474.035335 C = 9069.892321 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.867 5.867 2 C 0.073 3.927 3 Si 0.920 3.080 4 H -0.272 1.272 5 H -0.280 1.280 6 H -0.280 1.280 7 C -0.536 4.536 8 H 0.074 0.926 9 S -0.057 6.057 10 C -0.153 4.153 11 C 0.517 3.483 12 O -0.446 6.446 13 N -0.666 5.666 14 C 0.377 3.623 15 C -0.216 4.216 16 C -0.037 4.037 17 C -0.196 4.196 18 C 0.157 3.843 19 N -0.472 5.472 20 C -0.073 4.073 21 C -0.118 4.118 22 C -0.070 4.070 23 H 0.268 0.732 24 H 0.092 0.908 25 H 0.092 0.908 26 H 0.415 0.585 27 H 0.136 0.864 28 H 0.132 0.868 29 H 0.087 0.913 30 H 0.090 0.910 31 H 0.074 0.926 32 H 0.081 0.919 33 H 0.073 0.927 34 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.031 -22.424 0.529 23.227 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.502 5.502 2 C -0.136 4.136 3 Si 0.746 3.254 4 H -0.196 1.196 5 H -0.206 1.206 6 H -0.206 1.206 7 C -0.684 4.684 8 H 0.092 0.908 9 S 0.170 5.830 10 C -0.303 4.303 11 C 0.302 3.698 12 O -0.311 6.311 13 N -0.314 5.314 14 C 0.145 3.855 15 C -0.240 4.240 16 C -0.063 4.063 17 C -0.200 4.200 18 C 0.018 3.982 19 N -0.186 5.186 20 C -0.110 4.110 21 C -0.156 4.156 22 C -0.108 4.108 23 H 0.078 0.922 24 H 0.111 0.889 25 H 0.110 0.890 26 H 0.252 0.748 27 H 0.154 0.846 28 H 0.150 0.850 29 H 0.106 0.894 30 H 0.108 0.892 31 H 0.093 0.907 32 H 0.099 0.901 33 H 0.091 0.909 34 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 3.294 -21.773 0.476 22.026 hybrid contribution 3.243 0.813 0.042 3.343 sum 6.537 -20.961 0.518 21.963 Atomic orbital electron populations 1.70024 1.05957 1.27394 1.46829 1.25000 0.95038 0.99063 0.94516 0.86102 0.79563 0.81828 0.77907 1.19610 1.20552 1.20559 1.22903 0.94956 0.91561 1.58972 0.90812 1.85459 1.04532 0.96286 1.96722 1.23561 1.06907 0.94704 1.05160 1.20619 0.86898 0.85943 0.76314 1.90813 1.14504 1.84475 1.41350 1.43863 1.11342 1.03174 1.73049 1.18307 0.88739 0.85205 0.93281 1.21348 1.00146 0.92289 1.10184 1.20730 0.93915 0.96399 0.95220 1.21333 0.94134 0.97743 1.06791 1.21714 0.96942 0.86984 0.92570 1.66772 1.12238 1.24192 1.15398 1.21013 0.91048 0.95273 1.03707 1.22314 0.96683 0.94791 1.01838 1.20851 0.93888 0.94335 1.01711 0.92200 0.88936 0.88964 0.74807 0.84582 0.84970 0.89446 0.89160 0.90748 0.90084 0.90882 0.90375 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -26.24 13.22 55.49 0.73 -25.50 16 2 C 0.07 2.09 5.49 -17.43 -0.10 2.00 16 3 Si 0.92 21.43 29.55 -169.99 -5.02 16.41 16 4 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 5 H -0.28 -6.42 7.11 56.52 0.40 -6.01 16 6 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 7 C -0.54 -15.27 9.50 30.94 0.29 -14.98 16 8 H 0.07 1.99 7.80 -52.49 -0.41 1.58 16 9 S -0.06 -1.55 20.57 -107.50 -2.21 -3.76 16 10 C -0.15 -3.09 6.16 36.01 0.22 -2.87 16 11 C 0.52 10.20 7.81 -10.98 -0.09 10.11 16 12 O -0.45 -10.72 14.13 5.56 0.08 -10.64 16 13 N -0.67 -9.96 5.39 -11.46 -0.06 -10.02 16 14 C 0.38 5.82 7.42 -154.85 -1.15 4.67 16 15 C -0.22 -2.45 9.95 -39.27 -0.39 -2.84 16 16 C -0.04 -0.38 10.16 -39.30 -0.40 -0.78 16 17 C -0.20 -2.25 6.16 -104.15 -0.64 -2.89 16 18 C 0.16 2.28 7.31 -82.04 -0.60 1.68 16 19 N -0.47 -8.49 7.88 -8.30 -0.07 -8.55 16 20 C -0.07 -0.82 6.77 -26.79 -0.18 -1.00 16 21 C -0.12 -0.93 7.08 -25.30 -0.18 -1.11 16 22 C -0.07 -0.57 6.77 -26.88 -0.18 -0.75 16 23 H 0.27 7.52 8.31 -40.82 -0.34 7.18 16 24 H 0.09 1.71 8.14 -51.91 -0.42 1.29 16 25 H 0.09 1.69 8.14 -51.92 -0.42 1.27 16 26 H 0.42 4.34 8.70 -40.82 -0.36 3.98 16 27 H 0.14 1.09 8.06 -52.49 -0.42 0.66 16 28 H 0.13 0.93 8.06 -52.49 -0.42 0.50 16 29 H 0.09 1.04 8.14 -51.93 -0.42 0.62 16 30 H 0.09 0.97 8.14 -51.93 -0.42 0.54 16 31 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 32 H 0.08 0.48 8.14 -51.93 -0.42 0.05 16 33 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 34 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 LS Contribution 308.71 15.07 4.65 4.65 Total: -1.00 -36.53 308.71 -9.41 -45.94 By element: Atomic # 1 Polarization: 4.36 SS G_CDS: -4.13 Total: 0.23 kcal Atomic # 6 Polarization: -5.37 SS G_CDS: -3.39 Total: -8.76 kcal Atomic # 7 Polarization: -44.68 SS G_CDS: 0.61 Total: -44.08 kcal Atomic # 8 Polarization: -10.72 SS G_CDS: 0.08 Total: -10.64 kcal Atomic # 14 Polarization: 21.43 SS G_CDS: -5.02 Total: 16.41 kcal Atomic # 16 Polarization: -1.55 SS G_CDS: -2.21 Total: -3.76 kcal Total LS contribution 4.65 Total: 4.65 kcal Total: -36.53 -9.41 -45.94 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000297211996.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.987 kcal (2) G-P(sol) polarization free energy of solvation -36.530 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.458 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.414 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.944 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.044 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds