Wall clock time and date at job start Tue Mar 31 2020 00:22:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31637 * 1 3 3 Si 1.86797 * 119.99714 * 2 1 4 4 H 1.48501 * 109.47196 * 239.99450 * 3 2 1 5 5 H 1.48503 * 109.47344 * 359.97438 * 3 2 1 6 6 H 1.48504 * 109.47428 * 119.99571 * 3 2 1 7 7 C 1.38794 * 120.00143 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99964 * 180.02562 * 7 2 1 9 9 S 1.76205 * 120.00076 * 0.02562 * 7 2 1 10 10 C 1.81000 * 100.00078 * 179.97438 * 9 7 2 11 11 C 1.50699 * 109.47186 * 180.02562 * 10 9 7 12 12 O 1.21291 * 119.99713 * 5.53858 * 11 10 9 13 13 N 1.34771 * 120.00035 * 185.54301 * 11 10 9 14 14 C 1.46975 * 120.58006 * 353.98332 * 13 11 10 15 15 C 1.53428 * 107.73977 * 224.44628 * 14 13 11 16 16 C 1.52826 * 108.91673 * 296.78353 * 15 14 13 17 17 C 1.50693 * 110.50658 * 51.60307 * 16 15 14 18 18 N 1.32342 * 118.78080 * 159.23093 * 17 16 15 19 19 C 1.31663 * 122.12487 * 179.73993 * 18 17 16 20 20 C 1.38282 * 121.02632 * 0.02922 * 19 18 17 21 21 C 1.38499 * 118.97225 * 0.05199 * 20 19 18 22 22 C 1.38553 * 121.24636 * 339.12158 * 17 16 15 23 23 H 0.96998 * 120.00136 * 0.02562 * 1 2 3 24 24 H 1.09005 * 109.46732 * 60.00019 * 10 9 7 25 25 H 1.08997 * 109.47196 * 300.00845 * 10 9 7 26 26 H 1.08998 * 109.80682 * 104.88057 * 14 13 11 27 27 H 1.09002 * 109.85512 * 344.02719 * 14 13 11 28 28 H 1.09010 * 109.56030 * 176.95956 * 15 14 13 29 29 H 1.08995 * 109.56533 * 56.62044 * 15 14 13 30 30 H 1.09000 * 109.27420 * 291.33516 * 16 15 14 31 31 H 1.09006 * 109.24220 * 171.84569 * 16 15 14 32 32 H 1.08002 * 119.48570 * 180.29739 * 19 18 17 33 33 H 1.07997 * 120.51254 * 180.02562 * 20 19 18 34 34 H 1.07994 * 120.80327 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3164 0.0000 0.0000 3 14 2.2503 1.6178 0.0000 4 1 3.1041 1.6964 -1.2124 5 1 1.2852 2.7465 -0.0006 6 1 3.1040 1.6966 1.2126 7 6 2.0104 -1.2020 0.0005 8 1 3.0904 -1.2019 0.0010 9 16 1.1294 -2.7280 0.0005 10 6 2.5160 -3.8914 0.0005 11 6 1.9876 -5.3027 -0.0001 12 8 0.7958 -5.5040 -0.1019 13 7 2.8392 -6.3412 0.1125 14 6 4.2923 -6.1208 0.1043 15 6 4.9205 -7.1792 -0.8117 16 6 4.6589 -8.5641 -0.2207 17 6 3.1932 -8.7411 0.0810 18 7 2.7101 -9.9677 0.1969 19 6 1.4416 -10.1983 0.4642 20 6 0.5488 -9.1565 0.6369 21 6 1.0071 -7.8545 0.5235 22 6 2.3550 -7.6492 0.2390 23 1 -0.4850 0.8400 -0.0004 24 1 3.1246 -3.7313 0.8906 25 1 3.1247 -3.7312 -0.8893 26 1 4.6874 -6.2253 1.1148 27 1 4.5134 -5.1240 -0.2773 28 1 5.9950 -7.0095 -0.8822 29 1 4.4733 -7.1153 -1.8036 30 1 5.2318 -8.6765 0.6998 31 1 4.9735 -9.3249 -0.9352 32 1 1.0940 -11.2169 0.5543 33 1 -0.4898 -9.3552 0.8563 34 1 0.3355 -7.0187 0.6522 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000298406116.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:22:55 Heat of formation + Delta-G solvation = -12.507560 kcal Electronic energy + Delta-G solvation = -18812.280164 eV Core-core repulsion = 15835.613320 eV Total energy + Delta-G solvation = -2976.666845 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 278.083 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -42.37949 -40.25202 -37.93047 -34.79629 -34.58907 -32.98855 -31.90300 -30.30053 -27.70226 -26.92598 -24.83692 -24.66633 -22.02443 -20.77434 -19.64480 -18.51711 -18.29385 -17.41808 -17.01973 -16.88590 -16.51423 -16.16597 -15.64673 -15.21437 -14.85167 -14.63755 -14.50140 -14.29885 -14.06765 -13.83402 -13.51763 -13.16771 -12.86976 -12.66421 -12.60079 -12.17640 -12.00590 -11.78735 -11.60369 -11.22787 -11.13413 -10.47795 -10.31729 -10.18683 -9.08539 -8.69814 -8.35768 -6.14861 0.01262 0.23870 1.14280 1.40992 1.42569 1.44658 1.53686 1.85668 2.25478 2.79394 2.99135 3.11860 3.27807 3.51463 3.66110 3.85608 3.96854 4.00066 4.15853 4.17754 4.20759 4.38280 4.42040 4.55711 4.62270 4.70623 4.93815 4.98823 5.06822 5.22041 5.26263 5.32584 5.41165 5.82945 6.04556 6.18731 6.84214 6.96817 7.05827 8.73173 Molecular weight = 278.08amu Principal moments of inertia in cm(-1) A = 0.034114 B = 0.004130 C = 0.003719 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 820.573121 B = 6777.794579 C = 7527.045310 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.912 5.912 2 C 0.015 3.985 3 Si 0.998 3.002 4 H -0.261 1.261 5 H -0.281 1.281 6 H -0.261 1.261 7 C -0.546 4.546 8 H 0.087 0.913 9 S -0.147 6.147 10 C -0.123 4.123 11 C 0.531 3.469 12 O -0.535 6.535 13 N -0.547 5.547 14 C 0.086 3.914 15 C -0.126 4.126 16 C -0.063 4.063 17 C 0.090 3.910 18 N -0.482 5.482 19 C 0.073 3.927 20 C -0.154 4.154 21 C -0.137 4.137 22 C 0.094 3.906 23 H 0.271 0.729 24 H 0.115 0.885 25 H 0.117 0.883 26 H 0.098 0.902 27 H 0.110 0.890 28 H 0.130 0.870 29 H 0.062 0.938 30 H 0.103 0.897 31 H 0.099 0.901 32 H 0.188 0.812 33 H 0.159 0.841 34 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.323 -16.820 0.668 20.862 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.190 4.190 3 Si 0.819 3.181 4 H -0.186 1.186 5 H -0.206 1.206 6 H -0.185 1.185 7 C -0.694 4.694 8 H 0.105 0.895 9 S 0.081 5.919 10 C -0.274 4.274 11 C 0.321 3.679 12 O -0.412 6.412 13 N -0.272 5.272 14 C -0.035 4.035 15 C -0.164 4.164 16 C -0.101 4.101 17 C -0.050 4.050 18 N -0.191 5.191 19 C -0.085 4.085 20 C -0.174 4.174 21 C -0.165 4.165 22 C -0.003 4.003 23 H 0.080 0.920 24 H 0.133 0.867 25 H 0.135 0.865 26 H 0.117 0.883 27 H 0.128 0.872 28 H 0.149 0.851 29 H 0.081 0.919 30 H 0.121 0.879 31 H 0.118 0.882 32 H 0.205 0.795 33 H 0.176 0.824 34 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges 11.019 -17.629 0.494 20.795 hybrid contribution 0.369 1.999 0.148 2.038 sum 11.388 -15.630 0.641 19.349 Atomic orbital electron populations 1.70173 1.08020 1.28730 1.47892 1.26113 0.95917 1.03301 0.93634 0.85011 0.77809 0.75655 0.79586 1.18565 1.20607 1.18536 1.23168 0.95469 0.91688 1.59091 0.89535 1.85608 1.10006 0.99243 1.97079 1.23386 1.03942 0.92860 1.07164 1.20478 0.85786 0.86711 0.74922 1.90525 1.17524 1.84969 1.48188 1.45788 1.09176 1.03350 1.68848 1.22521 0.75577 1.02377 1.02976 1.21920 1.03893 0.92463 0.98139 1.20434 0.87680 0.98601 1.03379 1.21444 0.98005 0.86423 0.99134 1.67573 1.16583 1.22243 1.12725 1.23123 0.88051 1.00874 0.96484 1.22402 1.02752 0.91937 1.00320 1.22623 0.95562 1.00141 0.98156 1.18871 0.94469 0.85389 1.01604 0.91982 0.86656 0.86522 0.88344 0.87194 0.85150 0.91934 0.87919 0.88240 0.79477 0.82360 0.83317 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -55.07 13.22 21.65 0.29 -54.78 16 2 C 0.02 0.85 5.49 84.86 0.47 1.31 16 3 Si 1.00 42.39 29.55 68.60 2.03 44.42 16 4 H -0.26 -10.49 7.11 99.48 0.71 -9.78 16 5 H -0.28 -11.74 7.11 99.48 0.71 -11.03 16 6 H -0.26 -10.46 7.11 99.48 0.71 -9.76 16 7 C -0.55 -30.20 9.50 67.95 0.65 -29.55 16 8 H 0.09 4.37 7.80 -2.91 -0.02 4.35 16 9 S -0.15 -7.90 20.58 -56.49 -1.16 -9.06 16 10 C -0.12 -4.67 4.58 71.24 0.33 -4.34 16 11 C 0.53 19.89 7.57 87.66 0.66 20.56 16 12 O -0.53 -24.21 12.57 -3.06 -0.04 -24.25 16 13 N -0.55 -15.91 2.97 -629.14 -1.87 -17.78 16 14 C 0.09 1.58 6.17 86.43 0.53 2.12 16 15 C -0.13 -1.77 6.10 30.68 0.19 -1.58 16 16 C -0.06 -1.04 6.00 29.79 0.18 -0.86 16 17 C 0.09 2.25 6.66 42.55 0.28 2.53 16 18 N -0.48 -12.15 10.24 -183.42 -1.88 -14.03 16 19 C 0.07 1.63 11.17 84.73 0.95 2.58 16 20 C -0.15 -3.83 10.12 22.34 0.23 -3.60 16 21 C -0.14 -4.41 8.96 22.58 0.20 -4.21 16 22 C 0.09 2.80 6.31 38.15 0.24 3.04 16 23 H 0.27 15.27 8.31 -92.71 -0.77 14.50 16 24 H 0.12 3.88 8.06 -2.39 -0.02 3.86 16 25 H 0.12 3.93 7.60 -2.40 -0.02 3.92 16 26 H 0.10 1.47 8.14 -2.39 -0.02 1.45 16 27 H 0.11 1.81 6.28 -2.39 -0.01 1.80 16 28 H 0.13 0.89 8.14 -2.38 -0.02 0.87 16 29 H 0.06 1.07 8.14 -2.39 -0.02 1.05 16 30 H 0.10 1.33 8.14 -2.39 -0.02 1.31 16 31 H 0.10 1.46 8.14 -2.38 -0.02 1.44 16 32 H 0.19 2.72 8.06 -2.91 -0.02 2.69 16 33 H 0.16 3.04 8.06 -2.91 -0.02 3.02 16 34 H 0.15 5.70 5.07 -13.79 -0.07 5.63 16 Total: -1.00 -75.50 299.05 3.33 -72.17 By element: Atomic # 1 Polarization: 14.25 SS G_CDS: 1.06 Total: 15.31 kcal Atomic # 6 Polarization: -16.90 SS G_CDS: 4.90 Total: -12.00 kcal Atomic # 7 Polarization: -83.13 SS G_CDS: -3.46 Total: -86.59 kcal Atomic # 8 Polarization: -24.21 SS G_CDS: -0.04 Total: -24.25 kcal Atomic # 14 Polarization: 42.39 SS G_CDS: 2.03 Total: 44.42 kcal Atomic # 16 Polarization: -7.90 SS G_CDS: -1.16 Total: -9.06 kcal Total: -75.50 3.33 -72.17 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000298406116.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.662 kcal (2) G-P(sol) polarization free energy of solvation -75.497 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.835 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.327 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.170 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.508 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds