Wall clock time and date at job start Mon Mar 30 2020 23:48:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.46506 * 119.99871 * 2 1 4 4 C 1.50703 * 109.47169 * 275.00164 * 3 2 1 5 5 H 1.08004 * 119.99723 * 0.02562 * 4 3 2 6 6 C 1.37873 * 119.99950 * 179.97438 * 4 3 2 7 7 N 1.31515 * 120.00161 * 0.02562 * 6 4 3 8 8 Si 1.86799 * 119.99893 * 179.97438 * 6 4 3 9 9 H 1.48505 * 109.47013 * 60.00586 * 8 6 4 10 10 H 1.48502 * 109.47029 * 180.02562 * 8 6 4 11 11 H 1.48494 * 109.47487 * 300.00436 * 8 6 4 12 12 S 1.65595 * 120.00079 * 180.02562 * 2 1 3 13 13 O 1.42099 * 106.40427 * 23.53365 * 12 2 1 14 14 O 1.42105 * 106.40508 * 156.45640 * 12 2 1 15 15 N 1.65602 * 107.21642 * 269.99534 * 12 2 1 16 16 C 1.46496 * 120.00018 * 58.23098 * 15 12 2 17 17 C 1.50693 * 115.54978 * 263.43811 * 16 15 12 18 18 O 1.20826 * 120.00149 * 149.93828 * 17 16 15 19 19 O 1.34234 * 119.99781 * 329.93252 * 17 16 15 20 20 C 1.53007 * 117.49833 * 117.72806 * 16 15 12 21 21 C 1.53000 * 59.99914 * 252.50984 * 20 16 15 22 22 H 1.09008 * 109.46685 * 269.99792 * 1 2 3 23 23 H 1.08993 * 109.47270 * 29.99665 * 1 2 3 24 24 H 1.09001 * 109.47109 * 150.00040 * 1 2 3 25 25 H 1.09000 * 109.46593 * 35.00430 * 3 2 1 26 26 H 1.08999 * 109.46778 * 155.00548 * 3 2 1 27 27 H 0.96995 * 120.00407 * 180.02562 * 7 6 4 28 28 H 0.96998 * 119.99622 * 238.22557 * 15 12 2 29 29 H 0.96707 * 116.99671 * 180.02562 * 19 17 16 30 30 H 1.08993 * 117.49898 * 359.97438 * 20 16 15 31 31 H 1.09003 * 117.49777 * 145.02618 * 20 16 15 32 32 H 1.09006 * 117.50173 * 252.51294 * 21 20 16 33 33 H 1.09004 * 117.50180 * 107.49259 * 21 20 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.3414 1.7658 -1.4154 5 1 1.9281 1.1939 -2.2332 6 6 2.9997 2.9510 -1.6663 7 7 3.5024 3.6475 -0.6705 8 14 3.1786 3.5666 -3.4208 9 1 1.8324 3.7717 -4.0132 10 1 3.9210 4.8528 -3.4208 11 1 3.9252 2.5647 -4.2233 12 16 2.2930 -1.4341 -0.0006 13 8 1.4113 -2.4063 -0.5454 14 8 3.5760 -1.1565 -0.5450 15 7 2.5382 -1.8592 1.5810 16 6 1.3935 -2.0341 2.4784 17 6 1.0498 -0.8417 3.3333 18 8 -0.0945 -0.6497 3.6703 19 8 2.0150 0.0071 3.7205 20 6 1.1744 -3.4231 3.0814 21 6 0.2376 -2.9078 1.9870 22 1 -0.3633 0.0000 1.0278 23 1 -0.3633 0.8899 -0.5137 24 1 -0.3633 -0.8900 -0.5138 25 1 1.6501 2.0043 0.5895 26 1 3.1858 1.1177 0.4342 27 1 3.9652 4.4815 -0.8470 28 1 3.4397 -1.9925 1.9132 29 1 1.7460 0.7572 4.2684 30 1 1.8816 -4.2068 2.8102 31 1 0.7815 -3.4747 4.0969 32 1 -0.7715 -2.6203 2.2824 33 1 0.3288 -3.3525 0.9959 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000309378894.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:48:46 Heat of formation + Delta-G solvation = -131.309467 kcal Electronic energy + Delta-G solvation = -21104.142935 eV Core-core repulsion = 17679.182439 eV Total energy + Delta-G solvation = -3424.960496 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 278.081 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.53360 -37.72653 -36.56432 -36.01898 -35.51234 -35.25611 -32.44229 -32.02662 -27.78315 -25.31207 -25.08043 -22.85685 -22.30196 -20.66761 -19.00446 -18.25569 -17.48294 -17.20011 -16.80751 -16.31306 -15.69373 -15.37542 -14.95237 -14.42140 -14.30889 -13.59648 -13.32119 -13.21118 -12.40771 -12.17836 -12.14428 -11.80785 -11.69018 -11.52463 -11.46176 -11.19083 -11.13759 -11.08402 -11.04834 -10.72485 -10.53804 -10.47948 -10.05150 -9.79110 -9.57395 -8.44536 -8.10204 -6.06633 -4.10877 1.10300 1.97813 2.84157 3.25775 3.33865 3.37187 3.41911 3.47419 3.97214 4.40132 4.45569 4.53454 4.88223 5.03390 5.19464 5.28467 5.36029 5.63319 5.77535 5.84076 5.98795 6.02334 6.28713 6.48124 6.54771 6.95345 7.23282 7.39512 7.58049 7.89149 7.90495 8.19535 8.91083 9.54236 11.01968 Molecular weight = 278.08amu Principal moments of inertia in cm(-1) A = 0.025720 B = 0.006565 C = 0.005957 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1088.369350 B = 4264.295791 C = 4699.380404 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.093 3.907 2 N -0.991 5.991 3 C 0.260 3.740 4 C -0.531 4.531 5 H 0.060 0.940 6 C 0.062 3.938 7 N -0.896 5.896 8 Si 0.898 3.102 9 H -0.276 1.276 10 H -0.286 1.286 11 H -0.274 1.274 12 S 2.781 3.219 13 O -0.993 6.993 14 O -0.957 6.957 15 N -1.090 6.090 16 C 0.084 3.916 17 C 0.513 3.487 18 O -0.512 6.512 19 O -0.498 6.498 20 C -0.141 4.141 21 C -0.148 4.148 22 H 0.037 0.963 23 H 0.079 0.921 24 H 0.068 0.932 25 H 0.034 0.966 26 H 0.039 0.961 27 H 0.264 0.736 28 H 0.419 0.581 29 H 0.412 0.588 30 H 0.117 0.883 31 H 0.109 0.891 32 H 0.122 0.878 33 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.792 -11.257 9.743 15.640 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.054 4.054 2 N -0.835 5.835 3 C 0.138 3.862 4 C -0.570 4.570 5 H 0.078 0.922 6 C -0.140 4.140 7 N -0.534 5.534 8 Si 0.725 3.275 9 H -0.202 1.202 10 H -0.212 1.212 11 H -0.200 1.200 12 S 2.789 3.211 13 O -0.976 6.976 14 O -0.941 6.941 15 N -0.847 5.847 16 C -0.009 4.009 17 C 0.353 3.647 18 O -0.400 6.400 19 O -0.309 6.309 20 C -0.180 4.180 21 C -0.186 4.186 22 H 0.056 0.944 23 H 0.097 0.903 24 H 0.087 0.913 25 H 0.052 0.948 26 H 0.057 0.943 27 H 0.074 0.926 28 H 0.253 0.747 29 H 0.271 0.729 30 H 0.135 0.865 31 H 0.128 0.872 32 H 0.140 0.860 33 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -4.760 -11.800 8.796 15.469 hybrid contribution 0.383 1.345 0.010 1.398 sum -4.377 -10.455 8.806 14.353 Atomic orbital electron populations 1.21407 0.79996 1.03644 1.00314 1.57517 1.14360 1.23204 1.88371 1.19046 0.90993 0.78537 0.97636 1.21458 1.36271 1.06403 0.92887 0.92179 1.24929 0.95070 0.96471 0.97519 1.69908 1.37241 1.15295 1.31004 0.86565 0.78304 0.77997 0.84630 1.20169 1.21155 1.19982 1.02100 0.73466 0.73069 0.72490 1.93481 1.67283 1.60160 1.76712 1.93662 1.40686 1.84707 1.75063 1.55774 1.12560 1.86601 1.29725 1.19579 0.93221 0.89660 0.98477 1.22427 0.82645 0.82412 0.77205 1.90716 1.21525 1.73260 1.54489 1.84546 1.41754 1.38553 1.66002 1.23417 1.02576 0.92520 0.99476 1.24019 0.94630 0.97695 1.02215 0.94413 0.90259 0.91344 0.94844 0.94323 0.92628 0.74663 0.72877 0.86472 0.87249 0.86005 0.83903 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.65 10.68 59.85 0.64 2.29 16 2 N -0.99 -20.61 3.23 -123.04 -0.40 -21.01 16 3 C 0.26 6.54 5.08 -5.19 -0.03 6.51 16 4 C -0.53 -14.96 9.38 -34.44 -0.32 -15.28 16 5 H 0.06 1.69 7.81 -52.48 -0.41 1.28 16 6 C 0.06 1.77 5.46 -17.82 -0.10 1.68 16 7 N -0.90 -26.15 13.29 55.43 0.74 -25.41 16 8 Si 0.90 21.88 29.54 -169.99 -5.02 16.86 16 9 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 10 H -0.29 -6.82 7.11 56.52 0.40 -6.41 16 11 H -0.27 -6.71 7.11 56.52 0.40 -6.31 16 12 S 2.78 53.84 5.98 -107.50 -0.64 53.20 16 13 O -0.99 -19.11 14.03 -57.17 -0.80 -19.92 16 14 O -0.96 -22.54 17.11 -57.17 -0.98 -23.52 16 15 N -1.09 -16.00 5.88 -0.40 0.00 -16.00 16 16 C 0.08 1.10 2.83 -132.97 -0.38 0.73 16 17 C 0.51 7.22 7.71 36.00 0.28 7.50 16 18 O -0.51 -7.93 17.02 -18.75 -0.32 -8.25 16 19 O -0.50 -6.43 13.31 -39.27 -0.52 -6.95 16 20 C -0.14 -1.34 10.16 -26.73 -0.27 -1.61 16 21 C -0.15 -1.74 9.29 -26.73 -0.25 -1.99 16 22 H 0.04 0.61 7.84 -51.92 -0.41 0.20 16 23 H 0.08 1.43 8.07 -51.93 -0.42 1.01 16 24 H 0.07 1.11 7.02 -51.93 -0.36 0.75 16 25 H 0.03 0.86 8.11 -51.93 -0.42 0.44 16 26 H 0.04 1.04 7.61 -51.93 -0.40 0.64 16 27 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 28 H 0.42 5.30 8.96 -34.47 -0.31 4.99 16 29 H 0.41 3.63 9.10 45.56 0.41 4.05 16 30 H 0.12 0.93 8.14 -51.93 -0.42 0.51 16 31 H 0.11 0.86 8.14 -51.93 -0.42 0.44 16 32 H 0.12 1.33 7.68 -51.93 -0.40 0.93 16 33 H 0.14 1.83 5.94 -51.93 -0.31 1.53 16 LS Contribution 304.03 15.07 4.58 4.58 Total: -1.00 -34.96 304.03 -6.79 -41.75 By element: Atomic # 1 Polarization: 7.85 SS G_CDS: -3.00 Total: 4.85 kcal Atomic # 6 Polarization: 0.25 SS G_CDS: -0.43 Total: -0.18 kcal Atomic # 7 Polarization: -62.76 SS G_CDS: 0.34 Total: -62.42 kcal Atomic # 8 Polarization: -56.01 SS G_CDS: -2.62 Total: -58.64 kcal Atomic # 14 Polarization: 21.88 SS G_CDS: -5.02 Total: 16.86 kcal Atomic # 16 Polarization: 53.84 SS G_CDS: -0.64 Total: 53.20 kcal Total LS contribution 4.58 Total: 4.58 kcal Total: -34.96 -6.79 -41.75 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309378894.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -89.557 kcal (2) G-P(sol) polarization free energy of solvation -34.961 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.518 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.792 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.753 kcal (6) G-S(sol) free energy of system = (1) + (5) -131.309 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds