Wall clock time and date at job start Mon Mar 30 2020 23:48:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.46506 * 119.99871 * 2 1 4 4 C 1.50703 * 109.47169 * 275.00164 * 3 2 1 5 5 H 1.08004 * 119.99723 * 0.02562 * 4 3 2 6 6 C 1.37873 * 119.99950 * 179.97438 * 4 3 2 7 7 N 1.31515 * 120.00161 * 0.02562 * 6 4 3 8 8 Si 1.86799 * 119.99893 * 179.97438 * 6 4 3 9 9 H 1.48505 * 109.47013 * 60.00586 * 8 6 4 10 10 H 1.48502 * 109.47029 * 180.02562 * 8 6 4 11 11 H 1.48494 * 109.47487 * 300.00436 * 8 6 4 12 12 S 1.65595 * 120.00079 * 180.02562 * 2 1 3 13 13 O 1.42099 * 106.40427 * 23.53365 * 12 2 1 14 14 O 1.42105 * 106.40508 * 156.45640 * 12 2 1 15 15 N 1.65602 * 107.21642 * 269.99534 * 12 2 1 16 16 C 1.46496 * 120.00018 * 58.23098 * 15 12 2 17 17 C 1.50693 * 115.54978 * 263.43811 * 16 15 12 18 18 O 1.20826 * 120.00149 * 149.93828 * 17 16 15 19 19 O 1.34234 * 119.99781 * 329.93252 * 17 16 15 20 20 C 1.53007 * 117.49833 * 117.72806 * 16 15 12 21 21 C 1.53000 * 59.99914 * 252.50984 * 20 16 15 22 22 H 1.09008 * 109.46685 * 269.99792 * 1 2 3 23 23 H 1.08993 * 109.47270 * 29.99665 * 1 2 3 24 24 H 1.09001 * 109.47109 * 150.00040 * 1 2 3 25 25 H 1.09000 * 109.46593 * 35.00430 * 3 2 1 26 26 H 1.08999 * 109.46778 * 155.00548 * 3 2 1 27 27 H 0.96995 * 120.00407 * 180.02562 * 7 6 4 28 28 H 0.96998 * 119.99622 * 238.22557 * 15 12 2 29 29 H 0.96707 * 116.99671 * 180.02562 * 19 17 16 30 30 H 1.08993 * 117.49898 * 359.97438 * 20 16 15 31 31 H 1.09003 * 117.49777 * 145.02618 * 20 16 15 32 32 H 1.09006 * 117.50173 * 252.51294 * 21 20 16 33 33 H 1.09004 * 117.50180 * 107.49259 * 21 20 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.3414 1.7658 -1.4154 5 1 1.9281 1.1939 -2.2332 6 6 2.9997 2.9510 -1.6663 7 7 3.5024 3.6475 -0.6705 8 14 3.1786 3.5666 -3.4208 9 1 1.8324 3.7717 -4.0132 10 1 3.9210 4.8528 -3.4208 11 1 3.9252 2.5647 -4.2233 12 16 2.2930 -1.4341 -0.0006 13 8 1.4113 -2.4063 -0.5454 14 8 3.5760 -1.1565 -0.5450 15 7 2.5382 -1.8592 1.5810 16 6 1.3935 -2.0341 2.4784 17 6 1.0498 -0.8417 3.3333 18 8 -0.0945 -0.6497 3.6703 19 8 2.0150 0.0071 3.7205 20 6 1.1744 -3.4231 3.0814 21 6 0.2376 -2.9078 1.9870 22 1 -0.3633 0.0000 1.0278 23 1 -0.3633 0.8899 -0.5137 24 1 -0.3633 -0.8900 -0.5138 25 1 1.6501 2.0043 0.5895 26 1 3.1858 1.1177 0.4342 27 1 3.9652 4.4815 -0.8470 28 1 3.4397 -1.9925 1.9132 29 1 1.7460 0.7572 4.2684 30 1 1.8816 -4.2068 2.8102 31 1 0.7815 -3.4747 4.0969 32 1 -0.7715 -2.6203 2.2824 33 1 0.3288 -3.3525 0.9959 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000309378894.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:48:44 Heat of formation + Delta-G solvation = -159.963160 kcal Electronic energy + Delta-G solvation = -21105.385453 eV Core-core repulsion = 17679.182439 eV Total energy + Delta-G solvation = -3426.203014 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 278.081 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.58167 -38.82944 -38.08467 -37.25852 -37.09977 -36.90402 -34.52422 -33.17607 -29.70401 -26.83212 -26.35491 -24.25676 -23.68035 -21.76483 -20.36997 -19.44783 -18.94401 -18.55622 -18.39391 -18.14550 -17.04917 -16.78124 -16.36793 -15.96266 -15.27824 -15.22787 -14.99337 -14.44097 -14.10190 -13.97132 -13.39167 -13.34771 -13.28412 -13.08663 -12.93838 -12.60407 -12.57715 -12.43775 -12.39928 -12.20744 -12.16469 -11.94825 -11.79743 -11.52858 -10.73985 -10.59759 -9.85475 -8.21379 -6.33683 -0.41707 0.93907 1.39217 1.42772 1.49828 1.78892 1.95111 2.38568 2.47937 2.59938 3.09401 3.28683 3.50843 3.75034 3.92711 4.12473 4.18453 4.60581 4.65374 4.75430 4.84391 4.94691 5.00524 5.13393 5.16615 5.41543 5.51386 5.66368 5.79171 5.98842 6.09039 6.74249 6.92233 7.35234 8.86201 Molecular weight = 278.08amu Principal moments of inertia in cm(-1) A = 0.025720 B = 0.006565 C = 0.005957 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1088.369350 B = 4264.295791 C = 4699.380404 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.091 3.909 2 N -1.000 6.000 3 C 0.277 3.723 4 C -0.553 4.553 5 H 0.054 0.946 6 C 0.012 3.988 7 N -0.923 5.923 8 Si 0.957 3.043 9 H -0.264 1.264 10 H -0.276 1.276 11 H -0.276 1.276 12 S 2.797 3.203 13 O -0.992 6.992 14 O -1.004 7.004 15 N -1.075 6.075 16 C 0.053 3.947 17 C 0.513 3.487 18 O -0.531 6.531 19 O -0.505 6.505 20 C -0.105 4.105 21 C -0.154 4.154 22 H 0.054 0.946 23 H 0.071 0.929 24 H 0.084 0.916 25 H 0.023 0.977 26 H 0.017 0.983 27 H 0.268 0.732 28 H 0.429 0.571 29 H 0.427 0.573 30 H 0.138 0.862 31 H 0.132 0.868 32 H 0.129 0.871 33 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.383 -12.271 10.109 16.786 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.054 4.054 2 N -0.842 5.842 3 C 0.154 3.846 4 C -0.592 4.592 5 H 0.072 0.928 6 C -0.188 4.188 7 N -0.563 5.563 8 Si 0.782 3.218 9 H -0.189 1.189 10 H -0.201 1.201 11 H -0.202 1.202 12 S 2.805 3.195 13 O -0.976 6.976 14 O -0.989 6.989 15 N -0.836 5.836 16 C -0.040 4.040 17 C 0.354 3.646 18 O -0.420 6.420 19 O -0.318 6.318 20 C -0.144 4.144 21 C -0.192 4.192 22 H 0.072 0.928 23 H 0.090 0.910 24 H 0.103 0.897 25 H 0.041 0.959 26 H 0.035 0.965 27 H 0.077 0.923 28 H 0.266 0.734 29 H 0.289 0.711 30 H 0.156 0.844 31 H 0.150 0.850 32 H 0.147 0.853 33 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -5.363 -12.814 9.169 16.644 hybrid contribution 0.538 1.595 -0.006 1.683 sum -4.825 -11.219 9.164 15.268 Atomic orbital electron populations 1.21535 0.78320 1.04050 1.01517 1.57431 1.15518 1.22148 1.89071 1.18547 0.90209 0.80010 0.95854 1.21821 1.36458 1.06793 0.94121 0.92778 1.25759 0.94723 0.96710 1.01560 1.70001 1.37723 1.15689 1.32889 0.85624 0.78817 0.77597 0.79786 1.18853 1.20097 1.20154 1.01435 0.72238 0.72580 0.73199 1.93484 1.66994 1.59573 1.77499 1.93597 1.42940 1.85296 1.77019 1.55205 1.13933 1.85880 1.28558 1.19906 0.93323 0.91251 0.99504 1.22597 0.82428 0.82542 0.77034 1.90705 1.22082 1.73729 1.55498 1.84522 1.41806 1.39179 1.66272 1.23665 1.00936 0.89897 0.99893 1.24068 0.94896 0.97495 1.02712 0.92783 0.91019 0.89746 0.95938 0.96541 0.92333 0.73415 0.71122 0.84381 0.84978 0.85268 0.84944 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 3.18 10.68 127.77 1.36 4.54 16 2 N -1.00 -41.62 3.23 -543.20 -1.75 -43.38 16 3 C 0.28 14.24 5.08 85.63 0.43 14.67 16 4 C -0.55 -31.54 9.38 25.60 0.24 -31.30 16 5 H 0.05 3.07 7.81 -2.91 -0.02 3.05 16 6 C 0.01 0.69 5.46 84.65 0.46 1.15 16 7 N -0.92 -54.39 13.29 21.45 0.28 -54.11 16 8 Si 0.96 44.73 29.54 68.60 2.03 46.76 16 9 H -0.26 -11.72 7.11 99.48 0.71 -11.01 16 10 H -0.28 -12.36 7.11 99.48 0.71 -11.65 16 11 H -0.28 -12.90 7.11 99.48 0.71 -12.19 16 12 S 2.80 107.40 5.98 -56.49 -0.34 107.06 16 13 O -0.99 -37.14 14.03 -128.00 -1.80 -38.93 16 14 O -1.00 -47.97 17.11 -128.00 -2.19 -50.16 16 15 N -1.07 -30.27 5.88 -155.19 -0.91 -31.19 16 16 C 0.05 1.28 2.83 2.86 0.01 1.29 16 17 C 0.51 13.65 7.71 71.23 0.55 14.20 16 18 O -0.53 -15.63 17.02 21.96 0.37 -15.26 16 19 O -0.51 -12.56 13.31 -51.46 -0.68 -13.24 16 20 C -0.11 -1.63 10.16 30.60 0.31 -1.32 16 21 C -0.15 -3.24 9.29 30.59 0.28 -2.96 16 22 H 0.05 1.69 7.84 -2.38 -0.02 1.67 16 23 H 0.07 2.58 8.07 -2.39 -0.02 2.56 16 24 H 0.08 2.64 7.02 -2.39 -0.02 2.63 16 25 H 0.02 1.19 8.11 -2.39 -0.02 1.17 16 26 H 0.02 0.92 7.61 -2.39 -0.02 0.90 16 27 H 0.27 14.83 8.31 -92.71 -0.77 14.06 16 28 H 0.43 10.36 8.96 -96.75 -0.87 9.49 16 29 H 0.43 7.21 9.10 -74.05 -0.67 6.53 16 30 H 0.14 1.60 8.14 -2.39 -0.02 1.58 16 31 H 0.13 1.52 8.14 -2.39 -0.02 1.50 16 32 H 0.13 2.52 7.68 -2.38 -0.02 2.50 16 33 H 0.13 3.12 5.94 -2.38 -0.01 3.11 16 Total: -1.00 -74.57 304.03 -1.71 -76.28 By element: Atomic # 1 Polarization: 16.27 SS G_CDS: -0.38 Total: 15.89 kcal Atomic # 6 Polarization: -3.38 SS G_CDS: 3.65 Total: 0.27 kcal Atomic # 7 Polarization: -126.29 SS G_CDS: -2.38 Total: -128.67 kcal Atomic # 8 Polarization: -113.29 SS G_CDS: -4.30 Total: -117.59 kcal Atomic # 14 Polarization: 44.73 SS G_CDS: 2.03 Total: 46.76 kcal Atomic # 16 Polarization: 107.40 SS G_CDS: -0.34 Total: 107.06 kcal Total: -74.57 -1.71 -76.28 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309378894.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -83.684 kcal (2) G-P(sol) polarization free energy of solvation -74.568 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -158.252 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.711 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.279 kcal (6) G-S(sol) free energy of system = (1) + (5) -159.963 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds