Wall clock time and date at job start Tue Mar 31 2020 00:58:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38393 * 119.35877 * 2 1 4 4 C 1.38685 * 119.49242 * 180.02562 * 3 2 1 5 5 C 1.38552 * 118.27830 * 359.97438 * 4 3 2 6 6 O 1.35169 * 134.07538 * 180.34942 * 5 4 3 7 7 C 1.34490 * 108.06852 * 180.02562 * 6 5 4 8 8 S 1.76199 * 124.98094 * 179.86771 * 7 6 5 9 9 C 1.80999 * 99.99903 * 179.72172 * 8 7 6 10 10 H 1.09007 * 109.47225 * 55.00129 * 9 8 7 11 11 C 1.52995 * 109.47528 * 295.00292 * 9 8 7 12 12 C 1.53004 * 109.47311 * 174.99880 * 9 8 7 13 13 C 1.50701 * 109.47211 * 295.00738 * 12 9 8 14 14 H 1.08002 * 119.99761 * 359.97438 * 13 12 9 15 15 C 1.37871 * 119.99694 * 180.27574 * 13 12 9 16 16 N 1.31514 * 120.00482 * 359.71466 * 15 13 12 17 17 Si 1.86801 * 119.99746 * 179.72062 * 15 13 12 18 18 H 1.48494 * 109.47230 * 359.97438 * 17 15 13 19 19 H 1.48505 * 109.47301 * 119.99669 * 17 15 13 20 20 H 1.48498 * 109.47430 * 239.99516 * 17 15 13 21 21 N 1.31079 * 110.03720 * 359.61026 * 7 6 5 22 22 C 1.35873 * 108.82954 * 0.23598 * 21 7 6 23 23 N 1.31711 * 119.36195 * 179.97438 * 2 1 3 24 24 H 1.08994 * 109.46805 * 270.02242 * 1 2 3 25 25 H 1.08996 * 109.46947 * 30.02222 * 1 2 3 26 26 H 1.08998 * 109.47297 * 150.02059 * 1 2 3 27 27 H 1.07996 * 120.25192 * 359.97438 * 3 2 1 28 28 H 1.07996 * 120.85845 * 180.02562 * 4 3 2 29 29 H 1.09004 * 109.46944 * 59.99608 * 11 9 8 30 30 H 1.09001 * 109.47261 * 179.97438 * 11 9 8 31 31 H 1.09000 * 109.46927 * 299.99850 * 11 9 8 32 32 H 1.09000 * 109.47211 * 174.99765 * 12 9 8 33 33 H 1.09007 * 109.46376 * 55.00307 * 12 9 8 34 34 H 0.96995 * 120.00207 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1855 1.2062 0.0000 4 6 3.5724 1.2094 -0.0005 5 6 4.2316 -0.0092 -0.0005 6 8 5.5331 -0.3742 0.0050 7 6 5.5895 -1.7179 0.0011 8 16 7.0743 -2.6665 0.0024 9 6 6.3794 -4.3378 0.0041 10 1 5.6958 -4.4480 -0.8378 11 6 5.6204 -4.5733 1.3114 12 6 7.5105 -5.3606 -0.1204 13 6 8.1801 -5.2085 -1.4619 14 1 7.8332 -4.4576 -2.1564 15 6 9.2313 -6.0319 -1.8049 16 7 9.6535 -6.9464 -0.9593 17 14 10.0562 -5.8485 -3.4709 18 1 9.3986 -4.7555 -4.2312 19 1 11.4926 -5.5240 -3.2791 20 1 9.9328 -7.1205 -4.2271 21 7 4.3780 -2.2183 0.0017 22 6 3.4817 -1.1971 0.0009 23 7 2.1528 -1.1479 0.0005 24 1 -0.3633 0.0004 1.0276 25 1 -0.3633 0.8898 -0.5142 26 1 -0.3634 -0.8901 -0.5135 27 1 1.6392 2.1378 -0.0004 28 1 4.1241 2.1378 -0.0001 29 1 4.8146 -3.8447 1.4001 30 1 5.2016 -5.5797 1.3122 31 1 6.3040 -4.4633 2.1533 32 1 7.1019 -6.3671 -0.0302 33 1 8.2408 -5.1927 0.6713 34 1 10.3928 -7.5259 -1.2009 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000331309950.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:58:57 Heat of formation + Delta-G solvation = 43.077280 kcal Electronic energy + Delta-G solvation = -18418.541301 eV Core-core repulsion = 15444.284796 eV Total energy + Delta-G solvation = -2974.256505 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 278.083 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -43.16554 -39.30222 -35.10477 -34.43620 -32.67323 -32.20229 -31.48461 -27.91063 -27.40844 -24.29990 -23.41092 -22.88951 -22.11915 -20.85647 -18.70726 -17.85746 -16.93020 -16.46230 -16.43188 -15.73163 -14.99823 -14.56194 -14.37885 -13.95588 -13.68456 -13.12817 -12.94435 -12.72596 -12.54426 -12.42524 -11.96373 -11.75870 -11.66735 -11.35892 -10.94937 -10.83647 -10.70471 -10.50905 -9.72045 -9.68556 -9.48780 -9.43369 -9.31266 -9.11662 -8.49050 -7.39153 -6.13493 -4.17119 0.45007 0.93057 1.02192 2.21002 2.42807 2.92455 3.26748 3.34950 3.39862 3.60205 3.81143 4.26919 4.37716 4.48533 4.81276 4.91213 5.20591 5.24302 5.35408 5.40624 5.45388 5.61111 5.73104 5.74337 5.85303 5.92117 6.05126 6.23318 6.45213 6.50924 6.70963 7.34047 7.39821 7.42423 7.82996 7.83065 8.16515 8.87973 9.48468 10.97201 Molecular weight = 278.08amu Principal moments of inertia in cm(-1) A = 0.031868 B = 0.003876 C = 0.003770 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 878.410029 B = 7222.763729 C = 7425.725723 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.101 4.101 2 C 0.150 3.850 3 C -0.169 4.169 4 C -0.032 4.032 5 C -0.065 4.065 6 O -0.193 6.193 7 C 0.247 3.753 8 S 0.094 5.906 9 C -0.068 4.068 10 H 0.098 0.902 11 C -0.151 4.151 12 C 0.037 3.963 13 C -0.530 4.530 14 H 0.065 0.935 15 C 0.062 3.938 16 N -0.890 5.890 17 Si 0.893 3.107 18 H -0.270 1.270 19 H -0.283 1.283 20 H -0.283 1.283 21 N -0.486 5.486 22 C 0.259 3.741 23 N -0.449 5.449 24 H 0.081 0.919 25 H 0.078 0.922 26 H 0.080 0.920 27 H 0.150 0.850 28 H 0.145 0.855 29 H 0.065 0.935 30 H 0.066 0.934 31 H 0.057 0.943 32 H 0.046 0.954 33 H 0.030 0.970 34 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.406 15.699 3.552 20.947 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.003 3.997 3 C -0.190 4.190 4 C -0.060 4.060 5 C -0.121 4.121 6 O -0.085 6.085 7 C -0.070 4.070 8 S 0.328 5.672 9 C -0.196 4.196 10 H 0.117 0.883 11 C -0.210 4.210 12 C -0.002 4.002 13 C -0.568 4.568 14 H 0.083 0.917 15 C -0.140 4.140 16 N -0.529 5.529 17 Si 0.720 3.280 18 H -0.195 1.195 19 H -0.209 1.209 20 H -0.209 1.209 21 N -0.222 5.222 22 C 0.019 3.981 23 N -0.163 5.163 24 H 0.099 0.901 25 H 0.097 0.903 26 H 0.099 0.901 27 H 0.168 0.832 28 H 0.163 0.837 29 H 0.084 0.916 30 H 0.085 0.915 31 H 0.076 0.924 32 H 0.064 0.936 33 H 0.048 0.952 34 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -12.627 14.422 3.573 19.499 hybrid contribution -0.008 1.093 -0.947 1.446 sum -12.635 15.515 2.626 20.180 Atomic orbital electron populations 1.20718 0.87851 1.03819 1.03409 1.21264 0.97154 0.87081 0.94242 1.21744 0.92901 0.99735 1.04630 1.20314 0.93471 0.94470 0.97703 1.21219 0.83206 0.98600 1.09063 1.84687 1.25356 1.23294 1.75201 1.29837 1.01108 0.81384 0.94691 1.86689 0.93475 1.00105 1.86935 1.23949 1.02889 0.91087 1.01717 0.88335 1.22153 1.00239 1.02794 0.95767 1.19147 0.90632 0.92122 0.98279 1.21303 1.16029 1.18419 1.01081 0.91684 1.24985 0.96813 0.94932 0.97258 1.69953 1.27113 1.20376 1.35446 0.86508 0.79342 0.78160 0.83955 1.19455 1.20857 1.20919 1.71228 0.96869 1.28723 1.25407 1.20439 0.90847 0.87770 0.99077 1.66678 1.05958 1.29514 1.14110 0.90064 0.90283 0.90123 0.83193 0.83696 0.91565 0.91487 0.92370 0.93568 0.95220 0.92758 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.77 10.16 36.01 0.37 -0.40 16 2 C 0.15 1.77 6.77 -82.59 -0.56 1.21 16 3 C -0.17 -1.62 9.72 -39.36 -0.38 -2.00 16 4 C -0.03 -0.37 10.18 -39.30 -0.40 -0.77 16 5 C -0.06 -1.03 7.43 -38.62 -0.29 -1.32 16 6 O -0.19 -3.35 10.79 2.76 0.03 -3.32 16 7 C 0.25 4.60 8.07 52.44 0.42 5.02 16 8 S 0.09 1.78 21.07 -107.50 -2.26 -0.49 16 9 C -0.07 -1.37 2.24 -26.73 -0.06 -1.43 16 10 H 0.10 2.08 8.13 -51.91 -0.42 1.66 16 11 C -0.15 -2.68 9.00 37.16 0.33 -2.35 16 12 C 0.04 0.90 4.44 -27.88 -0.12 0.77 16 13 C -0.53 -14.04 8.53 -34.44 -0.29 -14.33 16 14 H 0.06 1.70 7.60 -52.49 -0.40 1.30 16 15 C 0.06 1.71 5.46 -17.82 -0.10 1.61 16 16 N -0.89 -25.48 13.29 55.43 0.74 -24.74 16 17 Si 0.89 21.02 29.54 -169.99 -5.02 16.00 16 18 H -0.27 -6.27 7.11 56.52 0.40 -5.87 16 19 H -0.28 -6.60 7.11 56.52 0.40 -6.19 16 20 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 21 N -0.49 -9.47 8.68 -12.97 -0.11 -9.58 16 22 C 0.26 4.68 8.38 -156.98 -1.31 3.37 16 23 N -0.45 -7.36 10.32 -8.92 -0.09 -7.46 16 24 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 25 H 0.08 0.38 8.07 -51.93 -0.42 -0.04 16 26 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 27 H 0.15 0.81 8.06 -52.49 -0.42 0.39 16 28 H 0.15 1.19 8.06 -52.49 -0.42 0.76 16 29 H 0.07 1.20 5.85 -51.93 -0.30 0.89 16 30 H 0.07 1.14 8.14 -51.93 -0.42 0.71 16 31 H 0.06 0.98 8.14 -51.93 -0.42 0.55 16 32 H 0.05 1.17 8.14 -51.93 -0.42 0.75 16 33 H 0.03 0.75 8.14 -51.93 -0.42 0.32 16 34 H 0.26 7.11 8.31 -40.82 -0.34 6.77 16 LS Contribution 308.32 15.07 4.65 4.65 Total: -1.00 -30.90 308.32 -8.53 -39.43 By element: Atomic # 1 Polarization: 0.19 SS G_CDS: -4.06 Total: -3.87 kcal Atomic # 6 Polarization: -8.23 SS G_CDS: -2.40 Total: -10.63 kcal Atomic # 7 Polarization: -42.31 SS G_CDS: 0.53 Total: -41.78 kcal Atomic # 8 Polarization: -3.35 SS G_CDS: 0.03 Total: -3.32 kcal Atomic # 14 Polarization: 21.02 SS G_CDS: -5.02 Total: 16.00 kcal Atomic # 16 Polarization: 1.78 SS G_CDS: -2.26 Total: -0.49 kcal Total LS contribution 4.65 Total: 4.65 kcal Total: -30.90 -8.53 -39.43 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331309950.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.508 kcal (2) G-P(sol) polarization free energy of solvation -30.897 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.612 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.534 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.431 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.077 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds