Wall clock time and date at job start Tue Mar 31 2020 00:58:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38393 * 119.35877 * 2 1 4 4 C 1.38685 * 119.49242 * 180.02562 * 3 2 1 5 5 C 1.38552 * 118.27830 * 359.97438 * 4 3 2 6 6 O 1.35169 * 134.07538 * 180.34942 * 5 4 3 7 7 C 1.34490 * 108.06852 * 180.02562 * 6 5 4 8 8 S 1.76199 * 124.98094 * 179.86771 * 7 6 5 9 9 C 1.80999 * 99.99903 * 179.72172 * 8 7 6 10 10 H 1.09007 * 109.47225 * 55.00129 * 9 8 7 11 11 C 1.52995 * 109.47528 * 295.00292 * 9 8 7 12 12 C 1.53004 * 109.47311 * 174.99880 * 9 8 7 13 13 C 1.50701 * 109.47211 * 295.00738 * 12 9 8 14 14 H 1.08002 * 119.99761 * 359.97438 * 13 12 9 15 15 C 1.37871 * 119.99694 * 180.27574 * 13 12 9 16 16 N 1.31514 * 120.00482 * 359.71466 * 15 13 12 17 17 Si 1.86801 * 119.99746 * 179.72062 * 15 13 12 18 18 H 1.48494 * 109.47230 * 359.97438 * 17 15 13 19 19 H 1.48505 * 109.47301 * 119.99669 * 17 15 13 20 20 H 1.48498 * 109.47430 * 239.99516 * 17 15 13 21 21 N 1.31079 * 110.03720 * 359.61026 * 7 6 5 22 22 C 1.35873 * 108.82954 * 0.23598 * 21 7 6 23 23 N 1.31711 * 119.36195 * 179.97438 * 2 1 3 24 24 H 1.08994 * 109.46805 * 270.02242 * 1 2 3 25 25 H 1.08996 * 109.46947 * 30.02222 * 1 2 3 26 26 H 1.08998 * 109.47297 * 150.02059 * 1 2 3 27 27 H 1.07996 * 120.25192 * 359.97438 * 3 2 1 28 28 H 1.07996 * 120.85845 * 180.02562 * 4 3 2 29 29 H 1.09004 * 109.46944 * 59.99608 * 11 9 8 30 30 H 1.09001 * 109.47261 * 179.97438 * 11 9 8 31 31 H 1.09000 * 109.46927 * 299.99850 * 11 9 8 32 32 H 1.09000 * 109.47211 * 174.99765 * 12 9 8 33 33 H 1.09007 * 109.46376 * 55.00307 * 12 9 8 34 34 H 0.96995 * 120.00207 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1855 1.2062 0.0000 4 6 3.5724 1.2094 -0.0005 5 6 4.2316 -0.0092 -0.0005 6 8 5.5331 -0.3742 0.0050 7 6 5.5895 -1.7179 0.0011 8 16 7.0743 -2.6665 0.0024 9 6 6.3794 -4.3378 0.0041 10 1 5.6958 -4.4480 -0.8378 11 6 5.6204 -4.5733 1.3114 12 6 7.5105 -5.3606 -0.1204 13 6 8.1801 -5.2085 -1.4619 14 1 7.8332 -4.4576 -2.1564 15 6 9.2313 -6.0319 -1.8049 16 7 9.6535 -6.9464 -0.9593 17 14 10.0562 -5.8485 -3.4709 18 1 9.3986 -4.7555 -4.2312 19 1 11.4926 -5.5240 -3.2791 20 1 9.9328 -7.1205 -4.2271 21 7 4.3780 -2.2183 0.0017 22 6 3.4817 -1.1971 0.0009 23 7 2.1528 -1.1479 0.0005 24 1 -0.3633 0.0004 1.0276 25 1 -0.3633 0.8898 -0.5142 26 1 -0.3634 -0.8901 -0.5135 27 1 1.6392 2.1378 -0.0004 28 1 4.1241 2.1378 -0.0001 29 1 4.8146 -3.8447 1.4001 30 1 5.2016 -5.5797 1.3122 31 1 6.3040 -4.4633 2.1533 32 1 7.1019 -6.3671 -0.0302 33 1 8.2408 -5.1927 0.6713 34 1 10.3928 -7.5259 -1.2009 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000331309950.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:58:55 Heat of formation + Delta-G solvation = 23.663770 kcal Electronic energy + Delta-G solvation = -18419.383134 eV Core-core repulsion = 15444.284796 eV Total energy + Delta-G solvation = -2975.098338 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 278.083 amu Computer time = 1.30 seconds Orbital eigenvalues (eV) -44.39227 -40.32947 -36.70860 -35.93243 -34.10115 -33.61863 -32.53844 -29.52194 -28.62136 -25.42677 -25.29863 -23.98006 -23.25527 -22.51571 -19.98727 -18.99001 -18.54694 -18.20837 -17.69076 -16.81010 -16.60716 -16.39432 -15.28353 -14.94032 -14.89532 -14.65025 -14.38001 -13.77479 -13.68999 -13.46540 -13.34699 -13.23871 -13.02704 -12.93053 -12.65832 -12.44519 -12.41325 -12.10562 -11.55787 -11.35275 -11.21853 -10.59789 -10.57799 -10.50609 -10.29475 -8.80600 -8.22392 -6.32145 -0.65670 -0.40633 -0.07596 0.96204 1.01059 1.40597 1.42615 1.54819 1.65127 2.40842 2.54579 2.75175 3.13234 3.18273 3.67256 3.88245 3.99078 4.10018 4.11056 4.23420 4.45535 4.49213 4.67830 4.82227 4.84795 4.86369 4.93278 5.01941 5.10758 5.20459 5.36396 5.43708 5.44598 5.74725 6.09296 6.12218 6.78158 6.79942 7.36965 8.89088 Molecular weight = 278.08amu Principal moments of inertia in cm(-1) A = 0.031868 B = 0.003876 C = 0.003770 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 878.410029 B = 7222.763729 C = 7425.725723 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.099 4.099 2 C 0.145 3.855 3 C -0.138 4.138 4 C -0.031 4.031 5 C -0.083 4.083 6 O -0.196 6.196 7 C 0.233 3.767 8 S 0.092 5.908 9 C -0.060 4.060 10 H 0.084 0.916 11 C -0.140 4.140 12 C 0.046 3.954 13 C -0.540 4.540 14 H 0.064 0.936 15 C 0.011 3.989 16 N -0.926 5.926 17 Si 0.956 3.044 18 H -0.265 1.265 19 H -0.277 1.277 20 H -0.279 1.279 21 N -0.505 5.505 22 C 0.214 3.786 23 N -0.488 5.488 24 H 0.097 0.903 25 H 0.117 0.883 26 H 0.068 0.932 27 H 0.208 0.792 28 H 0.184 0.816 29 H 0.064 0.936 30 H 0.072 0.928 31 H 0.067 0.933 32 H 0.027 0.973 33 H 0.014 0.986 34 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.339 18.976 3.100 24.596 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.003 4.003 3 C -0.158 4.158 4 C -0.057 4.057 5 C -0.139 4.139 6 O -0.088 6.088 7 C -0.085 4.085 8 S 0.325 5.675 9 C -0.189 4.189 10 H 0.103 0.897 11 C -0.199 4.199 12 C 0.007 3.993 13 C -0.579 4.579 14 H 0.082 0.918 15 C -0.188 4.188 16 N -0.566 5.566 17 Si 0.781 3.219 18 H -0.189 1.189 19 H -0.202 1.202 20 H -0.205 1.205 21 N -0.242 5.242 22 C -0.025 4.025 23 N -0.202 5.202 24 H 0.115 0.885 25 H 0.136 0.864 26 H 0.087 0.913 27 H 0.225 0.775 28 H 0.201 0.799 29 H 0.083 0.917 30 H 0.091 0.909 31 H 0.086 0.914 32 H 0.045 0.955 33 H 0.032 0.968 34 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -14.571 17.712 3.120 23.147 hybrid contribution 0.288 0.286 -0.776 0.876 sum -14.284 17.998 2.344 23.097 Atomic orbital electron populations 1.20907 0.84761 1.05163 1.04783 1.22215 0.99150 0.86849 0.92058 1.22441 0.92185 1.01033 1.00173 1.20986 0.94395 0.94123 0.96231 1.21792 0.82217 0.99785 1.10108 1.84626 1.26537 1.22485 1.75123 1.29347 1.00466 0.82008 0.96688 1.86419 0.93754 0.99064 1.88284 1.23620 1.01316 0.91561 1.02448 0.89740 1.22057 1.00028 1.03029 0.94783 1.18913 0.91179 0.92381 0.96854 1.21619 1.16125 1.18183 1.01946 0.91755 1.25797 0.97556 0.94688 1.00759 1.70058 1.27860 1.21336 1.37310 0.85521 0.78407 0.78233 0.79727 1.18857 1.20244 1.20500 1.71064 0.97671 1.30466 1.25032 1.20596 0.91752 0.88171 1.01940 1.66710 1.05442 1.32303 1.15784 0.88474 0.86416 0.91321 0.77485 0.79881 0.91710 0.90909 0.91434 0.95533 0.96776 0.92583 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.11 10.16 71.24 0.72 -0.39 16 2 C 0.14 2.95 6.77 42.61 0.29 3.24 16 3 C -0.14 -1.94 9.72 22.41 0.22 -1.72 16 4 C -0.03 -0.59 10.18 22.45 0.23 -0.36 16 5 C -0.08 -2.58 7.43 22.89 0.17 -2.41 16 6 O -0.20 -6.85 10.79 -13.05 -0.14 -6.99 16 7 C 0.23 8.95 8.07 130.36 1.05 10.00 16 8 S 0.09 3.61 21.07 -56.49 -1.19 2.42 16 9 C -0.06 -2.56 2.24 30.59 0.07 -2.49 16 10 H 0.08 3.76 8.13 -2.39 -0.02 3.75 16 11 C -0.14 -5.18 9.00 71.98 0.65 -4.53 16 12 C 0.05 2.29 4.44 29.85 0.13 2.42 16 13 C -0.54 -29.43 8.53 25.60 0.22 -29.22 16 14 H 0.06 3.44 7.60 -2.91 -0.02 3.42 16 15 C 0.01 0.61 5.46 84.65 0.46 1.07 16 16 N -0.93 -54.18 13.29 21.45 0.28 -53.90 16 17 Si 0.96 43.57 29.54 68.60 2.03 45.60 16 18 H -0.26 -11.70 7.11 99.48 0.71 -10.99 16 19 H -0.28 -12.29 7.11 99.48 0.71 -11.58 16 20 H -0.28 -12.47 7.11 99.48 0.71 -11.77 16 21 N -0.51 -20.39 8.68 -309.05 -2.68 -23.08 16 22 C 0.21 7.78 8.38 134.25 1.12 8.90 16 23 N -0.49 -15.67 10.32 -182.14 -1.88 -17.55 16 24 H 0.10 0.84 8.14 -2.39 -0.02 0.82 16 25 H 0.12 0.44 8.07 -2.39 -0.02 0.42 16 26 H 0.07 0.98 8.14 -2.39 -0.02 0.96 16 27 H 0.21 0.57 8.06 -2.91 -0.02 0.55 16 28 H 0.18 2.05 8.06 -2.91 -0.02 2.03 16 29 H 0.06 2.43 5.85 -2.38 -0.01 2.41 16 30 H 0.07 2.55 8.14 -2.39 -0.02 2.53 16 31 H 0.07 2.33 8.14 -2.39 -0.02 2.31 16 32 H 0.03 1.42 8.14 -2.39 -0.02 1.40 16 33 H 0.01 0.74 8.14 -2.38 -0.02 0.72 16 34 H 0.27 14.61 8.31 -92.71 -0.77 13.84 16 Total: -1.00 -71.01 308.32 2.87 -68.15 By element: Atomic # 1 Polarization: -0.29 SS G_CDS: 1.11 Total: 0.82 kcal Atomic # 6 Polarization: -20.80 SS G_CDS: 5.34 Total: -15.47 kcal Atomic # 7 Polarization: -90.25 SS G_CDS: -4.28 Total: -94.52 kcal Atomic # 8 Polarization: -6.85 SS G_CDS: -0.14 Total: -6.99 kcal Atomic # 14 Polarization: 43.57 SS G_CDS: 2.03 Total: 45.60 kcal Atomic # 16 Polarization: 3.61 SS G_CDS: -1.19 Total: 2.42 kcal Total: -71.01 2.87 -68.15 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331309950.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.810 kcal (2) G-P(sol) polarization free energy of solvation -71.012 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.798 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.866 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.146 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.664 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.30 seconds