Wall clock time and date at job start Tue Mar 31 2020 00:59:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38384 * 119.35937 * 2 1 4 4 C 1.38691 * 119.48876 * 179.97438 * 3 2 1 5 5 C 1.38552 * 118.27806 * 0.02562 * 4 3 2 6 6 O 1.35165 * 134.07006 * 180.35119 * 5 4 3 7 7 C 1.34489 * 108.06545 * 180.02562 * 6 5 4 8 8 S 1.76203 * 124.98475 * 179.86618 * 7 6 5 9 9 C 1.81000 * 100.00334 * 179.71838 * 8 7 6 10 10 H 1.09004 * 109.46857 * 305.00268 * 9 8 7 11 11 C 1.52997 * 109.47005 * 64.99739 * 9 8 7 12 12 C 1.52997 * 109.47139 * 185.00145 * 9 8 7 13 13 C 1.50701 * 109.47212 * 64.99848 * 12 9 8 14 14 H 1.07998 * 120.00129 * 0.02562 * 13 12 9 15 15 C 1.37880 * 119.99861 * 179.97438 * 13 12 9 16 16 N 1.31510 * 119.99913 * 0.02562 * 15 13 12 17 17 Si 1.86797 * 119.99734 * 180.02562 * 15 13 12 18 18 H 1.48506 * 109.47294 * 60.00559 * 17 15 13 19 19 H 1.48503 * 109.46954 * 180.02562 * 17 15 13 20 20 H 1.48503 * 109.47431 * 300.00157 * 17 15 13 21 21 N 1.31082 * 110.03877 * 359.59656 * 7 6 5 22 22 C 1.35870 * 108.82588 * 0.24927 * 21 7 6 23 23 N 1.31707 * 119.35605 * 179.97438 * 2 1 3 24 24 H 1.08996 * 109.47512 * 270.02700 * 1 2 3 25 25 H 1.09007 * 109.46407 * 30.01890 * 1 2 3 26 26 H 1.08991 * 109.47124 * 150.01867 * 1 2 3 27 27 H 1.08004 * 120.25330 * 359.97438 * 3 2 1 28 28 H 1.08003 * 120.85733 * 180.02562 * 4 3 2 29 29 H 1.09000 * 109.47400 * 300.00324 * 11 9 8 30 30 H 1.09004 * 109.46881 * 60.00544 * 11 9 8 31 31 H 1.09002 * 109.47016 * 179.97438 * 11 9 8 32 32 H 1.09002 * 109.47153 * 304.99850 * 12 9 8 33 33 H 1.09001 * 109.46832 * 185.00041 * 12 9 8 34 34 H 0.97002 * 119.99768 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1855 1.2061 0.0000 4 6 3.5724 1.2092 0.0005 5 6 4.2316 -0.0094 0.0005 6 8 5.5330 -0.3744 0.0069 7 6 5.5894 -1.7181 0.0024 8 16 7.0741 -2.6669 0.0044 9 6 6.3792 -4.3382 0.0049 10 1 5.6946 -4.4467 0.8462 11 6 5.6216 -4.5758 -1.3030 12 6 7.5101 -5.3607 0.1324 13 6 8.1781 -5.2063 1.4744 14 1 7.8305 -4.4544 2.1673 15 6 9.2323 -6.0258 1.8181 16 7 9.6553 -6.9418 0.9745 17 14 10.0598 -5.8348 3.4818 18 1 9.0633 -6.0615 4.5593 19 1 11.1576 -6.8273 3.6055 20 1 10.6168 -4.4636 3.6033 21 7 4.3779 -2.2185 0.0022 22 6 3.4817 -1.1972 0.0009 23 7 2.1527 -1.1479 0.0005 24 1 -0.3634 0.0005 1.0276 25 1 -0.3632 0.8899 -0.5142 26 1 -0.3633 -0.8901 -0.5135 27 1 1.6392 2.1378 -0.0004 28 1 4.1243 2.1376 0.0010 29 1 4.8160 -3.8473 -1.3938 30 1 6.3062 -4.4673 -2.1442 31 1 5.2035 -5.5825 -1.3029 32 1 8.2413 -5.1943 -0.6587 33 1 7.1014 -6.3673 0.0435 34 1 10.3972 -7.5180 1.2162 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000331309951.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:59:01 Heat of formation + Delta-G solvation = 43.144042 kcal Electronic energy + Delta-G solvation = -18418.350337 eV Core-core repulsion = 15444.096727 eV Total energy + Delta-G solvation = -2974.253610 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 278.083 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -43.16646 -39.30253 -35.10449 -34.43563 -32.67290 -32.20118 -31.48415 -27.90948 -27.40736 -24.29981 -23.40736 -22.88928 -22.11937 -20.85499 -18.70740 -17.85726 -16.93147 -16.45706 -16.42925 -15.73284 -14.99771 -14.56850 -14.37407 -13.95932 -13.68519 -13.12294 -12.94106 -12.72355 -12.54748 -12.42525 -11.95320 -11.76131 -11.66734 -11.34980 -10.94934 -10.82470 -10.70908 -10.52913 -9.71712 -9.68138 -9.48516 -9.44054 -9.32653 -9.12480 -8.48050 -7.39213 -6.13096 -4.16892 0.44969 0.93082 1.02206 2.20977 2.42857 2.92485 3.29871 3.33990 3.37274 3.60228 3.81125 4.26911 4.37787 4.48537 4.81261 4.91177 5.20437 5.24509 5.35635 5.40680 5.45331 5.61173 5.73014 5.74419 5.85293 5.92095 6.05234 6.23306 6.45239 6.51093 6.71037 7.34040 7.39800 7.42544 7.82940 7.83058 8.16708 8.87604 9.48505 10.97532 Molecular weight = 278.08amu Principal moments of inertia in cm(-1) A = 0.031869 B = 0.003877 C = 0.003770 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 878.378445 B = 7219.820461 C = 7425.367817 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.101 4.101 2 C 0.150 3.850 3 C -0.169 4.169 4 C -0.032 4.032 5 C -0.065 4.065 6 O -0.193 6.193 7 C 0.247 3.753 8 S 0.094 5.906 9 C -0.068 4.068 10 H 0.098 0.902 11 C -0.151 4.151 12 C 0.038 3.962 13 C -0.531 4.531 14 H 0.064 0.936 15 C 0.063 3.937 16 N -0.891 5.891 17 Si 0.894 3.106 18 H -0.275 1.275 19 H -0.287 1.287 20 H -0.274 1.274 21 N -0.486 5.486 22 C 0.259 3.741 23 N -0.449 5.449 24 H 0.081 0.919 25 H 0.078 0.922 26 H 0.080 0.920 27 H 0.150 0.850 28 H 0.145 0.855 29 H 0.066 0.934 30 H 0.057 0.943 31 H 0.066 0.934 32 H 0.029 0.971 33 H 0.046 0.954 34 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.377 15.669 -3.573 20.910 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.003 3.997 3 C -0.190 4.190 4 C -0.060 4.060 5 C -0.121 4.121 6 O -0.085 6.085 7 C -0.070 4.070 8 S 0.328 5.672 9 C -0.196 4.196 10 H 0.117 0.883 11 C -0.210 4.210 12 C -0.001 4.001 13 C -0.570 4.570 14 H 0.082 0.918 15 C -0.139 4.139 16 N -0.529 5.529 17 Si 0.721 3.279 18 H -0.201 1.201 19 H -0.212 1.212 20 H -0.199 1.199 21 N -0.222 5.222 22 C 0.019 3.981 23 N -0.163 5.163 24 H 0.100 0.900 25 H 0.097 0.903 26 H 0.099 0.901 27 H 0.168 0.832 28 H 0.163 0.837 29 H 0.084 0.916 30 H 0.076 0.924 31 H 0.085 0.915 32 H 0.048 0.952 33 H 0.064 0.936 34 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -12.592 14.385 -3.592 19.452 hybrid contribution -0.018 1.120 0.978 1.486 sum -12.610 15.505 -2.614 20.156 Atomic orbital electron populations 1.20720 0.87851 1.03781 1.03446 1.21262 0.97156 0.87083 0.94241 1.21745 0.92899 0.99736 1.04631 1.20316 0.93473 0.94469 0.97701 1.21218 0.83208 0.98600 1.09067 1.84686 1.25355 1.23293 1.75198 1.29840 1.01108 0.81385 0.94690 1.86699 0.93468 1.00114 1.86932 1.23949 1.02894 0.91084 1.01713 0.88339 1.22154 1.00252 1.02787 0.95760 1.19133 0.90623 0.92118 0.98230 1.21227 1.16045 1.18579 1.01150 0.91800 1.24980 0.96791 0.94912 0.97247 1.69935 1.26980 1.20366 1.35619 0.86619 0.79092 0.78072 0.84119 1.20068 1.21223 1.19934 1.71230 0.96870 1.28720 1.25407 1.20438 0.90848 0.87770 0.99078 1.66679 1.05958 1.29508 1.14111 0.90045 0.90289 0.90136 0.83191 0.83695 0.91556 0.92374 0.91488 0.95225 0.93579 0.92640 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.77 10.16 36.01 0.37 -0.40 16 2 C 0.15 1.77 6.77 -82.59 -0.56 1.21 16 3 C -0.17 -1.62 9.72 -39.36 -0.38 -2.00 16 4 C -0.03 -0.37 10.18 -39.30 -0.40 -0.77 16 5 C -0.06 -1.04 7.43 -38.63 -0.29 -1.32 16 6 O -0.19 -3.35 10.79 2.77 0.03 -3.32 16 7 C 0.25 4.60 8.07 52.44 0.42 5.02 16 8 S 0.09 1.78 21.07 -107.50 -2.26 -0.49 16 9 C -0.07 -1.37 2.24 -26.73 -0.06 -1.43 16 10 H 0.10 2.08 8.13 -51.91 -0.42 1.66 16 11 C -0.15 -2.69 9.00 37.16 0.33 -2.35 16 12 C 0.04 0.92 4.44 -27.88 -0.12 0.79 16 13 C -0.53 -14.10 8.53 -34.44 -0.29 -14.39 16 14 H 0.06 1.66 7.60 -52.49 -0.40 1.27 16 15 C 0.06 1.73 5.46 -17.82 -0.10 1.63 16 16 N -0.89 -25.50 13.29 55.43 0.74 -24.77 16 17 Si 0.89 21.03 29.54 -169.99 -5.02 16.01 16 18 H -0.28 -6.42 7.11 56.52 0.40 -6.01 16 19 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 20 H -0.27 -6.35 7.11 56.52 0.40 -5.95 16 21 N -0.49 -9.47 8.68 -12.97 -0.11 -9.58 16 22 C 0.26 4.68 8.38 -156.98 -1.31 3.37 16 23 N -0.45 -7.36 10.32 -8.92 -0.09 -7.46 16 24 H 0.08 0.54 8.14 -51.93 -0.42 0.11 16 25 H 0.08 0.38 8.07 -51.93 -0.42 -0.04 16 26 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 27 H 0.15 0.81 8.06 -52.48 -0.42 0.39 16 28 H 0.15 1.19 8.06 -52.48 -0.42 0.76 16 29 H 0.07 1.20 5.85 -51.93 -0.30 0.89 16 30 H 0.06 0.98 8.14 -51.93 -0.42 0.55 16 31 H 0.07 1.14 8.14 -51.93 -0.42 0.71 16 32 H 0.03 0.74 8.14 -51.93 -0.42 0.32 16 33 H 0.05 1.17 8.14 -51.93 -0.42 0.75 16 34 H 0.26 7.18 8.31 -40.82 -0.34 6.85 16 LS Contribution 308.32 15.07 4.65 4.65 Total: -1.00 -30.86 308.32 -8.53 -39.39 By element: Atomic # 1 Polarization: 0.27 SS G_CDS: -4.06 Total: -3.79 kcal Atomic # 6 Polarization: -8.25 SS G_CDS: -2.40 Total: -10.65 kcal Atomic # 7 Polarization: -42.34 SS G_CDS: 0.53 Total: -41.80 kcal Atomic # 8 Polarization: -3.35 SS G_CDS: 0.03 Total: -3.32 kcal Atomic # 14 Polarization: 21.03 SS G_CDS: -5.02 Total: 16.01 kcal Atomic # 16 Polarization: 1.78 SS G_CDS: -2.26 Total: -0.49 kcal Total LS contribution 4.65 Total: 4.65 kcal Total: -30.86 -8.53 -39.39 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331309951.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.537 kcal (2) G-P(sol) polarization free energy of solvation -30.859 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.678 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.534 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.393 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.144 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds