Wall clock time and date at job start Tue Mar 31 2020 00:59:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38384 * 119.35937 * 2 1 4 4 C 1.38691 * 119.48876 * 179.97438 * 3 2 1 5 5 C 1.38552 * 118.27806 * 0.02562 * 4 3 2 6 6 O 1.35165 * 134.07006 * 180.35119 * 5 4 3 7 7 C 1.34489 * 108.06545 * 180.02562 * 6 5 4 8 8 S 1.76203 * 124.98475 * 179.86618 * 7 6 5 9 9 C 1.81000 * 100.00334 * 179.71838 * 8 7 6 10 10 H 1.09004 * 109.46857 * 305.00268 * 9 8 7 11 11 C 1.52997 * 109.47005 * 64.99739 * 9 8 7 12 12 C 1.52997 * 109.47139 * 185.00145 * 9 8 7 13 13 C 1.50701 * 109.47212 * 64.99848 * 12 9 8 14 14 H 1.07998 * 120.00129 * 0.02562 * 13 12 9 15 15 C 1.37880 * 119.99861 * 179.97438 * 13 12 9 16 16 N 1.31510 * 119.99913 * 0.02562 * 15 13 12 17 17 Si 1.86797 * 119.99734 * 180.02562 * 15 13 12 18 18 H 1.48506 * 109.47294 * 60.00559 * 17 15 13 19 19 H 1.48503 * 109.46954 * 180.02562 * 17 15 13 20 20 H 1.48503 * 109.47431 * 300.00157 * 17 15 13 21 21 N 1.31082 * 110.03877 * 359.59656 * 7 6 5 22 22 C 1.35870 * 108.82588 * 0.24927 * 21 7 6 23 23 N 1.31707 * 119.35605 * 179.97438 * 2 1 3 24 24 H 1.08996 * 109.47512 * 270.02700 * 1 2 3 25 25 H 1.09007 * 109.46407 * 30.01890 * 1 2 3 26 26 H 1.08991 * 109.47124 * 150.01867 * 1 2 3 27 27 H 1.08004 * 120.25330 * 359.97438 * 3 2 1 28 28 H 1.08003 * 120.85733 * 180.02562 * 4 3 2 29 29 H 1.09000 * 109.47400 * 300.00324 * 11 9 8 30 30 H 1.09004 * 109.46881 * 60.00544 * 11 9 8 31 31 H 1.09002 * 109.47016 * 179.97438 * 11 9 8 32 32 H 1.09002 * 109.47153 * 304.99850 * 12 9 8 33 33 H 1.09001 * 109.46832 * 185.00041 * 12 9 8 34 34 H 0.97002 * 119.99768 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1855 1.2061 0.0000 4 6 3.5724 1.2092 0.0005 5 6 4.2316 -0.0094 0.0005 6 8 5.5330 -0.3744 0.0069 7 6 5.5894 -1.7181 0.0024 8 16 7.0741 -2.6669 0.0044 9 6 6.3792 -4.3382 0.0049 10 1 5.6946 -4.4467 0.8462 11 6 5.6216 -4.5758 -1.3030 12 6 7.5101 -5.3607 0.1324 13 6 8.1781 -5.2063 1.4744 14 1 7.8305 -4.4544 2.1673 15 6 9.2323 -6.0258 1.8181 16 7 9.6553 -6.9418 0.9745 17 14 10.0598 -5.8348 3.4818 18 1 9.0633 -6.0615 4.5593 19 1 11.1576 -6.8273 3.6055 20 1 10.6168 -4.4636 3.6033 21 7 4.3779 -2.2185 0.0022 22 6 3.4817 -1.1972 0.0009 23 7 2.1527 -1.1479 0.0005 24 1 -0.3634 0.0005 1.0276 25 1 -0.3632 0.8899 -0.5142 26 1 -0.3633 -0.8901 -0.5135 27 1 1.6392 2.1378 -0.0004 28 1 4.1243 2.1376 0.0010 29 1 4.8160 -3.8473 -1.3938 30 1 6.3062 -4.4673 -2.1442 31 1 5.2035 -5.5825 -1.3029 32 1 8.2413 -5.1943 -0.6587 33 1 7.1014 -6.3673 0.0435 34 1 10.3972 -7.5180 1.2162 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000331309951.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:59:00 Heat of formation + Delta-G solvation = 23.761231 kcal Electronic energy + Delta-G solvation = -18419.190839 eV Core-core repulsion = 15444.096727 eV Total energy + Delta-G solvation = -2975.094112 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 278.083 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -44.39342 -40.32982 -36.70835 -35.93272 -34.10106 -33.61833 -32.53807 -29.52034 -28.62120 -25.42619 -25.29625 -23.98003 -23.25552 -22.51527 -19.98765 -18.98993 -18.54124 -18.20952 -17.68849 -16.81193 -16.60920 -16.39697 -15.28124 -14.94415 -14.88708 -14.64702 -14.38270 -13.76796 -13.68550 -13.46738 -13.35012 -13.23336 -13.02402 -12.92901 -12.62157 -12.48576 -12.41478 -12.10251 -11.56285 -11.35322 -11.23760 -10.59738 -10.56674 -10.50581 -10.29676 -8.80728 -8.22091 -6.32059 -0.65716 -0.40677 -0.07593 0.96181 1.01030 1.42490 1.43971 1.51744 1.65127 2.40993 2.54587 2.75166 3.13413 3.18262 3.67273 3.88237 3.99064 4.09991 4.11058 4.23430 4.45530 4.49198 4.67872 4.82159 4.84758 4.86250 4.93396 5.01991 5.10726 5.20452 5.36198 5.43692 5.44594 5.74429 6.09274 6.12238 6.78150 6.79533 7.36906 8.88998 Molecular weight = 278.08amu Principal moments of inertia in cm(-1) A = 0.031869 B = 0.003877 C = 0.003770 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 878.378445 B = 7219.820461 C = 7425.367817 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.099 4.099 2 C 0.145 3.855 3 C -0.138 4.138 4 C -0.031 4.031 5 C -0.083 4.083 6 O -0.196 6.196 7 C 0.233 3.767 8 S 0.092 5.908 9 C -0.060 4.060 10 H 0.084 0.916 11 C -0.140 4.140 12 C 0.046 3.954 13 C -0.543 4.543 14 H 0.064 0.936 15 C 0.012 3.988 16 N -0.926 5.926 17 Si 0.956 3.044 18 H -0.270 1.270 19 H -0.283 1.283 20 H -0.266 1.266 21 N -0.505 5.505 22 C 0.214 3.786 23 N -0.488 5.488 24 H 0.095 0.905 25 H 0.118 0.882 26 H 0.069 0.931 27 H 0.208 0.792 28 H 0.184 0.816 29 H 0.064 0.936 30 H 0.067 0.933 31 H 0.072 0.928 32 H 0.014 0.986 33 H 0.026 0.974 34 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.318 18.974 -3.098 24.582 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.003 4.003 3 C -0.158 4.158 4 C -0.057 4.057 5 C -0.139 4.139 6 O -0.088 6.088 7 C -0.085 4.085 8 S 0.325 5.675 9 C -0.189 4.189 10 H 0.103 0.897 11 C -0.199 4.199 12 C 0.007 3.993 13 C -0.581 4.581 14 H 0.082 0.918 15 C -0.187 4.187 16 N -0.565 5.565 17 Si 0.780 3.220 18 H -0.195 1.195 19 H -0.208 1.208 20 H -0.191 1.191 21 N -0.242 5.242 22 C -0.025 4.025 23 N -0.202 5.202 24 H 0.114 0.886 25 H 0.137 0.863 26 H 0.088 0.912 27 H 0.225 0.775 28 H 0.201 0.799 29 H 0.083 0.917 30 H 0.086 0.914 31 H 0.091 0.909 32 H 0.032 0.968 33 H 0.044 0.956 34 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -14.544 17.705 -3.116 23.124 hybrid contribution 0.277 0.305 0.802 0.902 sum -14.267 18.010 -2.314 23.093 Atomic orbital electron populations 1.20908 0.84763 1.05220 1.04726 1.22213 0.99151 0.86851 0.92061 1.22443 0.92183 1.01035 1.00167 1.20989 0.94397 0.94122 0.96230 1.21790 0.82216 0.99784 1.10107 1.84626 1.26538 1.22485 1.75120 1.29347 1.00461 0.82007 0.96686 1.86428 0.93754 0.99076 1.88286 1.23619 1.01314 0.91555 1.02446 0.89736 1.22058 1.00045 1.03022 0.94776 1.18900 0.91172 0.92376 0.96815 1.21565 1.16143 1.18370 1.02039 0.91751 1.25798 0.97536 0.94656 1.00755 1.70048 1.27684 1.21334 1.37482 0.85635 0.78141 0.78328 0.79861 1.19532 1.20791 1.19085 1.71066 0.97672 1.30464 1.25030 1.20595 0.91754 0.88171 1.01943 1.66712 1.05442 1.32297 1.15779 0.88634 0.86345 0.91237 0.77481 0.79880 0.91696 0.91439 0.90912 0.96793 0.95555 0.92566 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.11 10.16 71.24 0.72 -0.39 16 2 C 0.14 2.95 6.77 42.61 0.29 3.24 16 3 C -0.14 -1.94 9.72 22.41 0.22 -1.72 16 4 C -0.03 -0.59 10.18 22.45 0.23 -0.36 16 5 C -0.08 -2.58 7.43 22.89 0.17 -2.41 16 6 O -0.20 -6.85 10.79 -13.00 -0.14 -6.99 16 7 C 0.23 8.95 8.07 130.35 1.05 10.00 16 8 S 0.09 3.60 21.07 -56.49 -1.19 2.41 16 9 C -0.06 -2.55 2.24 30.59 0.07 -2.48 16 10 H 0.08 3.77 8.13 -2.39 -0.02 3.75 16 11 C -0.14 -5.18 9.00 71.98 0.65 -4.53 16 12 C 0.05 2.33 4.44 29.85 0.13 2.46 16 13 C -0.54 -29.59 8.53 25.60 0.22 -29.37 16 14 H 0.06 3.43 7.60 -2.91 -0.02 3.41 16 15 C 0.01 0.65 5.46 84.66 0.46 1.11 16 16 N -0.93 -54.26 13.29 21.45 0.28 -53.98 16 17 Si 0.96 43.52 29.54 68.60 2.03 45.55 16 18 H -0.27 -12.00 7.11 99.48 0.71 -11.29 16 19 H -0.28 -12.59 7.11 99.48 0.71 -11.88 16 20 H -0.27 -11.70 7.11 99.48 0.71 -10.99 16 21 N -0.51 -20.39 8.68 -309.05 -2.68 -23.07 16 22 C 0.21 7.77 8.38 134.25 1.12 8.90 16 23 N -0.49 -15.66 10.32 -182.14 -1.88 -17.54 16 24 H 0.10 0.87 8.14 -2.39 -0.02 0.85 16 25 H 0.12 0.42 8.07 -2.38 -0.02 0.40 16 26 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16 27 H 0.21 0.57 8.06 -2.91 -0.02 0.55 16 28 H 0.18 2.05 8.06 -2.91 -0.02 2.03 16 29 H 0.06 2.43 5.85 -2.39 -0.01 2.42 16 30 H 0.07 2.33 8.14 -2.39 -0.02 2.31 16 31 H 0.07 2.55 8.14 -2.39 -0.02 2.53 16 32 H 0.01 0.73 8.14 -2.39 -0.02 0.71 16 33 H 0.03 1.41 8.14 -2.39 -0.02 1.39 16 34 H 0.27 14.72 8.31 -92.71 -0.77 13.95 16 Total: -1.00 -70.96 308.32 2.87 -68.09 By element: Atomic # 1 Polarization: -0.03 SS G_CDS: 1.11 Total: 1.08 kcal Atomic # 6 Polarization: -20.89 SS G_CDS: 5.34 Total: -15.55 kcal Atomic # 7 Polarization: -90.31 SS G_CDS: -4.28 Total: -94.59 kcal Atomic # 8 Polarization: -6.85 SS G_CDS: -0.14 Total: -6.99 kcal Atomic # 14 Polarization: 43.52 SS G_CDS: 2.03 Total: 45.55 kcal Atomic # 16 Polarization: 3.60 SS G_CDS: -1.19 Total: 2.41 kcal Total: -70.96 2.87 -68.09 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331309951.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.856 kcal (2) G-P(sol) polarization free energy of solvation -70.961 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.895 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.866 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.095 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.761 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds