Wall clock time and date at job start Tue Mar 31 2020 00:43:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30746 * 1 3 3 Si 1.86797 * 120.00262 * 2 1 4 4 H 1.48503 * 109.47024 * 180.02562 * 3 2 1 5 5 H 1.48495 * 109.47505 * 300.00485 * 3 2 1 6 6 H 1.48507 * 109.46788 * 60.00301 * 3 2 1 7 7 C 1.40037 * 119.99547 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99865 * 155.73756 * 7 2 1 9 9 C 1.41543 * 120.00207 * 335.74252 * 7 2 1 10 10 C 1.41177 * 120.99137 * 328.91132 * 9 7 2 11 11 C 1.37590 * 119.01324 * 180.02562 * 10 9 7 12 12 N 1.32090 * 121.10894 * 0.02562 * 11 10 9 13 13 C 1.32472 * 122.22780 * 359.97438 * 12 11 10 14 14 N 1.39467 * 119.57541 * 180.02562 * 13 12 11 15 15 C 1.34781 * 120.00322 * 355.09885 * 14 13 12 16 16 O 1.21279 * 119.99607 * 5.07868 * 15 14 13 17 17 C 1.50697 * 120.00278 * 185.07802 * 15 14 13 18 18 H 1.09010 * 109.59802 * 300.69925 * 17 15 14 19 19 C 1.52936 * 109.60477 * 180.37969 * 17 15 14 20 20 C 1.53704 * 112.48971 * 209.96865 * 19 17 15 21 21 S 1.83402 * 104.97038 * 2.82239 * 20 19 17 22 22 C 1.55145 * 109.60425 * 61.02046 * 17 15 14 23 23 C 1.38597 * 120.84412 * 359.71755 * 13 12 11 24 24 H 0.97000 * 120.00621 * 174.18133 * 1 2 3 25 25 H 1.07999 * 120.49890 * 359.97438 * 10 9 7 26 26 H 1.07992 * 119.44810 * 180.02562 * 11 10 9 27 27 H 0.97008 * 119.99864 * 175.09388 * 14 13 12 28 28 H 1.08999 * 108.88763 * 330.75785 * 19 17 15 29 29 H 1.08996 * 108.88980 * 89.17279 * 19 17 15 30 30 H 1.09004 * 110.34443 * 121.69228 * 20 19 17 31 31 H 1.08998 * 110.34516 * 243.94697 * 20 19 17 32 32 H 1.09005 * 111.13643 * 279.28562 * 22 17 15 33 33 H 1.08999 * 111.13125 * 43.46123 * 22 17 15 34 34 H 1.07993 * 120.60585 * 180.31104 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3075 0.0000 0.0000 3 14 2.2415 1.6177 0.0000 4 1 3.7015 1.3462 -0.0006 5 1 1.8828 2.3965 -1.2124 6 1 1.8828 2.3963 1.2126 7 6 2.0076 -1.2128 -0.0005 8 1 3.0160 -1.2540 -0.3849 9 6 1.3935 -2.3847 0.5025 10 6 0.4426 -2.3174 1.5438 11 6 -0.1286 -3.4822 2.0022 12 7 0.1991 -4.6526 1.4850 13 6 1.0852 -4.7697 0.5072 14 7 1.3895 -6.0334 0.0017 15 6 0.8592 -7.1333 0.5724 16 8 0.0464 -7.0209 1.4655 17 6 1.2762 -8.5025 0.1009 18 1 1.0467 -8.6097 -0.9594 19 6 0.5264 -9.5703 0.8987 20 6 1.3358 -10.8683 1.0491 21 16 2.9452 -10.5192 0.2419 22 6 2.8001 -8.6884 0.3249 23 6 1.7089 -3.6519 -0.0242 24 1 -0.4851 -0.8357 -0.0852 25 1 0.1682 -1.3660 1.9749 26 1 -0.8571 -3.4389 2.7982 27 1 1.9828 -6.1208 -0.7608 28 1 0.3023 -9.1774 1.8904 29 1 -0.4115 -9.7961 0.3914 30 1 1.4837 -11.1027 2.1033 31 1 0.8295 -11.6912 0.5446 32 1 3.3751 -8.2144 -0.4706 33 1 3.1022 -8.3131 1.3027 34 1 2.4270 -3.7513 -0.8246 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000334695943.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:43:46 Heat of formation + Delta-G solvation = -12.251829 kcal Electronic energy + Delta-G solvation = -18687.039194 eV Core-core repulsion = 15710.383439 eV Total energy + Delta-G solvation = -2976.655755 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 278.083 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.09429 -38.28833 -35.61407 -34.73932 -33.79054 -30.58692 -30.29172 -28.51460 -25.86712 -25.63741 -22.90496 -22.07576 -20.93440 -19.55577 -18.28965 -17.54647 -16.69471 -16.06306 -15.72960 -14.79133 -14.52959 -14.47784 -14.23651 -14.05744 -13.92641 -13.27724 -13.00716 -12.79234 -12.28380 -12.27731 -12.09730 -11.85195 -11.73864 -11.22145 -10.99211 -10.64387 -10.50801 -10.42717 -9.99463 -9.91412 -9.46894 -9.21771 -8.25578 -7.98558 -7.89356 -7.42804 -7.19564 -4.74677 1.57671 2.00448 2.30352 2.69666 3.07158 3.10333 3.27763 3.28318 3.32728 3.92727 4.29078 4.51077 4.55570 4.58608 4.76269 4.86207 5.05855 5.20321 5.39032 5.41413 5.49736 5.74850 5.79462 5.96229 6.35844 6.36632 6.54598 6.65465 7.14979 7.17838 7.45211 7.53094 7.77266 7.95207 8.07830 8.44324 8.56714 8.70460 9.45273 9.93599 Molecular weight = 278.08amu Principal moments of inertia in cm(-1) A = 0.042132 B = 0.003530 C = 0.003326 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 664.414494 B = 7931.032749 C = 8415.838148 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.791 5.791 2 C 0.041 3.959 3 Si 1.072 2.928 4 H -0.276 1.276 5 H -0.277 1.277 6 H -0.273 1.273 7 C -0.520 4.520 8 H 0.080 0.920 9 C 0.132 3.868 10 C -0.271 4.271 11 C 0.124 3.876 12 N -0.558 5.558 13 C 0.355 3.645 14 N -0.658 5.658 15 C 0.507 3.493 16 O -0.471 6.471 17 C -0.111 4.111 18 H 0.110 0.890 19 C -0.120 4.120 20 C -0.065 4.065 21 S -0.295 6.295 22 C -0.059 4.059 23 C -0.303 4.303 24 H 0.299 0.701 25 H 0.111 0.889 26 H 0.127 0.873 27 H 0.407 0.593 28 H 0.095 0.905 29 H 0.084 0.916 30 H 0.092 0.908 31 H 0.100 0.900 32 H 0.113 0.887 33 H 0.097 0.903 34 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.716 -12.994 -1.597 13.609 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.414 5.414 2 C -0.182 4.182 3 Si 0.896 3.104 4 H -0.201 1.201 5 H -0.203 1.203 6 H -0.198 1.198 7 C -0.550 4.550 8 H 0.098 0.902 9 C 0.124 3.876 10 C -0.294 4.294 11 C -0.028 4.028 12 N -0.278 5.278 13 C 0.129 3.871 14 N -0.304 5.304 15 C 0.290 3.710 16 O -0.341 6.341 17 C -0.134 4.134 18 H 0.128 0.872 19 C -0.159 4.159 20 C -0.213 4.213 21 S -0.068 6.068 22 C -0.207 4.207 23 C -0.329 4.329 24 H 0.112 0.888 25 H 0.129 0.871 26 H 0.144 0.856 27 H 0.242 0.758 28 H 0.113 0.887 29 H 0.102 0.898 30 H 0.110 0.890 31 H 0.118 0.882 32 H 0.131 0.869 33 H 0.116 0.884 34 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 3.324 -12.876 -0.957 13.332 hybrid contribution 0.045 -0.227 -0.444 0.501 sum 3.369 -13.103 -1.401 13.602 Atomic orbital electron populations 1.70368 1.08228 1.34312 1.28528 1.27065 0.95636 1.04338 0.91128 0.83541 0.75443 0.73251 0.78199 1.20071 1.20305 1.19831 1.20555 1.02675 0.93446 1.38364 0.90201 1.17634 0.89127 0.92111 0.88708 1.22032 1.06706 0.98380 1.02325 1.21859 0.96625 0.87477 0.96870 1.67279 1.18753 1.27394 1.14366 1.18084 0.93367 0.83058 0.92593 1.43461 1.48657 1.04483 1.33795 1.20321 0.82107 0.85237 0.83377 1.90796 1.29711 1.85816 1.27727 1.22265 0.94263 0.93821 1.03087 0.87209 1.21822 0.98959 0.91700 1.03408 1.23956 0.93367 1.00649 1.03361 1.87808 1.30188 1.08332 1.80458 1.24320 0.96614 0.93240 1.06554 1.21230 1.11587 0.92325 1.07744 0.88789 0.87090 0.85576 0.75772 0.88691 0.89780 0.88959 0.88186 0.86895 0.88423 0.87851 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -20.37 12.55 55.55 0.70 -19.67 16 2 C 0.04 1.00 4.97 -17.34 -0.09 0.92 16 3 Si 1.07 20.72 30.00 -169.99 -5.10 15.62 16 4 H -0.28 -5.08 7.11 56.52 0.40 -4.68 16 5 H -0.28 -5.21 7.11 56.52 0.40 -4.81 16 6 H -0.27 -5.19 7.11 56.52 0.40 -4.79 16 7 C -0.52 -13.21 9.03 -37.65 -0.34 -13.55 16 8 H 0.08 1.97 7.95 -52.49 -0.42 1.55 16 9 C 0.13 3.38 5.18 -106.55 -0.55 2.83 16 10 C -0.27 -6.77 8.10 -38.70 -0.31 -7.08 16 11 C 0.12 2.96 11.15 -17.68 -0.20 2.76 16 12 N -0.56 -13.64 7.85 -12.52 -0.10 -13.74 16 13 C 0.36 7.95 7.42 -154.70 -1.15 6.81 16 14 N -0.66 -11.24 5.30 -11.49 -0.06 -11.30 16 15 C 0.51 8.37 7.09 -10.98 -0.08 8.29 16 16 O -0.47 -9.86 13.63 5.56 0.08 -9.78 16 17 C -0.11 -1.27 2.90 -90.67 -0.26 -1.53 16 18 H 0.11 1.06 8.14 -51.92 -0.42 0.64 16 19 C -0.12 -1.29 5.61 -26.40 -0.15 -1.44 16 20 C -0.07 -0.60 7.38 37.52 0.28 -0.32 16 21 S -0.29 -3.19 23.22 -107.50 -2.50 -5.68 16 22 C -0.06 -0.61 6.76 38.29 0.26 -0.36 16 23 C -0.30 -7.05 9.73 -38.48 -0.37 -7.42 16 24 H 0.30 7.96 6.87 -40.82 -0.28 7.68 16 25 H 0.11 2.80 7.01 -52.49 -0.37 2.44 16 26 H 0.13 2.69 8.06 -52.49 -0.42 2.26 16 27 H 0.41 5.33 8.70 -40.82 -0.35 4.97 16 28 H 0.09 1.23 6.86 -51.93 -0.36 0.87 16 29 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 30 H 0.09 0.79 8.14 -51.93 -0.42 0.37 16 31 H 0.10 0.76 8.14 -51.93 -0.42 0.34 16 32 H 0.11 0.98 8.14 -51.93 -0.42 0.55 16 33 H 0.10 1.11 8.10 -51.93 -0.42 0.69 16 34 H 0.10 2.18 8.06 -52.49 -0.42 1.75 16 LS Contribution 301.52 15.07 4.54 4.54 Total: -1.00 -30.52 301.52 -9.35 -39.88 By element: Atomic # 1 Polarization: 14.18 SS G_CDS: -3.95 Total: 10.23 kcal Atomic # 6 Polarization: -7.13 SS G_CDS: -2.96 Total: -10.09 kcal Atomic # 7 Polarization: -45.25 SS G_CDS: 0.54 Total: -44.71 kcal Atomic # 8 Polarization: -9.86 SS G_CDS: 0.08 Total: -9.78 kcal Atomic # 14 Polarization: 20.72 SS G_CDS: -5.10 Total: 15.62 kcal Atomic # 16 Polarization: -3.19 SS G_CDS: -2.50 Total: -5.68 kcal Total LS contribution 4.54 Total: 4.54 kcal Total: -30.52 -9.35 -39.88 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000334695943.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.627 kcal (2) G-P(sol) polarization free energy of solvation -30.524 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.897 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.355 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.879 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.252 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds