Wall clock time and date at job start Tue Mar 31 2020 00:43:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30746 * 1 3 3 Si 1.86797 * 120.00262 * 2 1 4 4 H 1.48503 * 109.47024 * 180.02562 * 3 2 1 5 5 H 1.48495 * 109.47505 * 300.00485 * 3 2 1 6 6 H 1.48507 * 109.46788 * 60.00301 * 3 2 1 7 7 C 1.40037 * 119.99547 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99865 * 155.73756 * 7 2 1 9 9 C 1.41543 * 120.00207 * 335.74252 * 7 2 1 10 10 C 1.41177 * 120.99137 * 328.91132 * 9 7 2 11 11 C 1.37590 * 119.01324 * 180.02562 * 10 9 7 12 12 N 1.32090 * 121.10894 * 0.02562 * 11 10 9 13 13 C 1.32472 * 122.22780 * 359.97438 * 12 11 10 14 14 N 1.39467 * 119.57541 * 180.02562 * 13 12 11 15 15 C 1.34781 * 120.00322 * 355.09885 * 14 13 12 16 16 O 1.21279 * 119.99607 * 5.07868 * 15 14 13 17 17 C 1.50697 * 120.00278 * 185.07802 * 15 14 13 18 18 H 1.09010 * 109.59802 * 300.69925 * 17 15 14 19 19 C 1.52936 * 109.60477 * 180.37969 * 17 15 14 20 20 C 1.53704 * 112.48971 * 209.96865 * 19 17 15 21 21 S 1.83402 * 104.97038 * 2.82239 * 20 19 17 22 22 C 1.55145 * 109.60425 * 61.02046 * 17 15 14 23 23 C 1.38597 * 120.84412 * 359.71755 * 13 12 11 24 24 H 0.97000 * 120.00621 * 174.18133 * 1 2 3 25 25 H 1.07999 * 120.49890 * 359.97438 * 10 9 7 26 26 H 1.07992 * 119.44810 * 180.02562 * 11 10 9 27 27 H 0.97008 * 119.99864 * 175.09388 * 14 13 12 28 28 H 1.08999 * 108.88763 * 330.75785 * 19 17 15 29 29 H 1.08996 * 108.88980 * 89.17279 * 19 17 15 30 30 H 1.09004 * 110.34443 * 121.69228 * 20 19 17 31 31 H 1.08998 * 110.34516 * 243.94697 * 20 19 17 32 32 H 1.09005 * 111.13643 * 279.28562 * 22 17 15 33 33 H 1.08999 * 111.13125 * 43.46123 * 22 17 15 34 34 H 1.07993 * 120.60585 * 180.31104 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3075 0.0000 0.0000 3 14 2.2415 1.6177 0.0000 4 1 3.7015 1.3462 -0.0006 5 1 1.8828 2.3965 -1.2124 6 1 1.8828 2.3963 1.2126 7 6 2.0076 -1.2128 -0.0005 8 1 3.0160 -1.2540 -0.3849 9 6 1.3935 -2.3847 0.5025 10 6 0.4426 -2.3174 1.5438 11 6 -0.1286 -3.4822 2.0022 12 7 0.1991 -4.6526 1.4850 13 6 1.0852 -4.7697 0.5072 14 7 1.3895 -6.0334 0.0017 15 6 0.8592 -7.1333 0.5724 16 8 0.0464 -7.0209 1.4655 17 6 1.2762 -8.5025 0.1009 18 1 1.0467 -8.6097 -0.9594 19 6 0.5264 -9.5703 0.8987 20 6 1.3358 -10.8683 1.0491 21 16 2.9452 -10.5192 0.2419 22 6 2.8001 -8.6884 0.3249 23 6 1.7089 -3.6519 -0.0242 24 1 -0.4851 -0.8357 -0.0852 25 1 0.1682 -1.3660 1.9749 26 1 -0.8571 -3.4389 2.7982 27 1 1.9828 -6.1208 -0.7608 28 1 0.3023 -9.1774 1.8904 29 1 -0.4115 -9.7961 0.3914 30 1 1.4837 -11.1027 2.1033 31 1 0.8295 -11.6912 0.5446 32 1 3.3751 -8.2144 -0.4706 33 1 3.1022 -8.3131 1.3027 34 1 2.4270 -3.7513 -0.8246 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000334695943.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:43:46 Heat of formation + Delta-G solvation = -29.832518 kcal Electronic energy + Delta-G solvation = -18687.801550 eV Core-core repulsion = 15710.383439 eV Total energy + Delta-G solvation = -2977.418111 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 278.083 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -41.56871 -39.97566 -36.82889 -36.30228 -35.48064 -32.47231 -31.39292 -30.04297 -27.70626 -26.65189 -24.28995 -23.89812 -22.40023 -20.82994 -20.03403 -18.80240 -17.91066 -17.37247 -16.94293 -16.45154 -16.37577 -15.83531 -15.71173 -15.38755 -14.92393 -14.84561 -14.60898 -14.28332 -13.79025 -13.66183 -13.16921 -12.94111 -12.83270 -12.69500 -12.42653 -11.99052 -11.86031 -11.74984 -11.56482 -11.46158 -11.03275 -10.77492 -10.18061 -9.74786 -9.31547 -8.99483 -8.79078 -6.70835 0.52505 0.75818 0.84767 1.21198 1.53006 1.60776 1.77685 1.81405 1.96100 2.31988 2.72108 3.34911 3.43040 3.53755 3.66171 3.92060 3.98784 4.06010 4.22334 4.43034 4.54708 4.58488 4.66173 4.70482 4.79853 4.81321 4.93281 5.07815 5.25994 5.40129 5.52905 5.70051 6.04809 6.08438 6.42379 6.54397 6.79545 7.14540 7.65743 7.98033 Molecular weight = 278.08amu Principal moments of inertia in cm(-1) A = 0.042132 B = 0.003530 C = 0.003326 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 664.414494 B = 7931.032749 C = 8415.838148 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.811 5.811 2 C 0.008 3.992 3 Si 1.123 2.877 4 H -0.261 1.261 5 H -0.266 1.266 6 H -0.268 1.268 7 C -0.545 4.545 8 H 0.083 0.917 9 C 0.108 3.892 10 C -0.286 4.286 11 C 0.120 3.880 12 N -0.577 5.577 13 C 0.356 3.644 14 N -0.647 5.647 15 C 0.507 3.493 16 O -0.517 6.517 17 C -0.096 4.096 18 H 0.138 0.862 19 C -0.119 4.119 20 C -0.056 4.056 21 S -0.310 6.310 22 C -0.055 4.055 23 C -0.311 4.311 24 H 0.282 0.718 25 H 0.099 0.901 26 H 0.146 0.854 27 H 0.427 0.573 28 H 0.070 0.930 29 H 0.095 0.905 30 H 0.097 0.903 31 H 0.122 0.878 32 H 0.135 0.865 33 H 0.085 0.915 34 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.799 -14.085 -2.600 15.106 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.433 5.433 2 C -0.210 4.210 3 Si 0.940 3.060 4 H -0.185 1.185 5 H -0.191 1.191 6 H -0.193 1.193 7 C -0.575 4.575 8 H 0.101 0.899 9 C 0.100 3.900 10 C -0.309 4.309 11 C -0.032 4.032 12 N -0.297 5.297 13 C 0.128 3.872 14 N -0.295 5.295 15 C 0.292 3.708 16 O -0.389 6.389 17 C -0.119 4.119 18 H 0.156 0.844 19 C -0.158 4.158 20 C -0.203 4.203 21 S -0.084 6.084 22 C -0.203 4.203 23 C -0.337 4.337 24 H 0.094 0.906 25 H 0.117 0.883 26 H 0.163 0.837 27 H 0.266 0.734 28 H 0.089 0.911 29 H 0.114 0.886 30 H 0.116 0.884 31 H 0.140 0.860 32 H 0.153 0.847 33 H 0.104 0.896 34 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges 4.434 -14.023 -1.996 14.842 hybrid contribution -0.315 -0.046 -0.109 0.337 sum 4.119 -14.069 -2.105 14.810 Atomic orbital electron populations 1.70491 1.09041 1.33207 1.30595 1.28494 0.95572 1.07503 0.89415 0.82923 0.74957 0.69416 0.78688 1.18456 1.19132 1.19327 1.20795 1.03012 0.94276 1.39457 0.89912 1.18007 0.89552 0.93377 0.89086 1.21981 1.07674 0.98240 1.03051 1.22181 0.96674 0.87222 0.97144 1.67414 1.19610 1.27388 1.15274 1.18356 0.92163 0.85033 0.91643 1.43461 1.48809 1.02916 1.34287 1.21204 0.80796 0.86542 0.82218 1.90783 1.31774 1.86661 1.29728 1.22273 0.94969 0.90176 1.04456 0.84396 1.21815 0.99801 0.92145 1.02052 1.23985 0.92117 1.00303 1.03925 1.87927 1.31540 1.08293 1.80591 1.24317 0.95877 0.93338 1.06795 1.21434 1.12032 0.91943 1.08252 0.90575 0.88266 0.83687 0.73385 0.91138 0.88609 0.88441 0.86018 0.84735 0.89640 0.85839 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -42.50 12.55 21.84 0.27 -42.23 16 2 C 0.01 0.37 4.97 85.29 0.42 0.79 16 3 Si 1.12 41.04 30.00 68.60 2.06 43.10 16 4 H -0.26 -8.79 7.11 99.48 0.71 -8.09 16 5 H -0.27 -9.22 7.11 99.48 0.71 -8.52 16 6 H -0.27 -9.56 7.11 99.48 0.71 -8.85 16 7 C -0.55 -27.93 9.03 23.52 0.21 -27.72 16 8 H 0.08 4.07 7.95 -2.91 -0.02 4.04 16 9 C 0.11 5.59 5.18 -21.11 -0.11 5.48 16 10 C -0.29 -14.66 8.10 22.84 0.19 -14.48 16 11 C 0.12 5.84 11.15 84.50 0.94 6.78 16 12 N -0.58 -28.32 7.85 -193.53 -1.52 -29.84 16 13 C 0.36 15.76 7.42 132.75 0.98 16.75 16 14 N -0.65 -21.11 5.30 -308.65 -1.64 -22.75 16 15 C 0.51 16.06 7.09 87.66 0.62 16.68 16 16 O -0.52 -21.54 13.63 -3.03 -0.04 -21.58 16 17 C -0.10 -1.94 2.90 -10.83 -0.03 -1.98 16 18 H 0.14 2.13 8.14 -2.38 -0.02 2.11 16 19 C -0.12 -2.33 5.61 30.81 0.17 -2.15 16 20 C -0.06 -0.87 7.38 72.22 0.53 -0.34 16 21 S -0.31 -5.91 23.22 -56.49 -1.31 -7.22 16 22 C -0.05 -1.01 6.76 72.72 0.49 -0.52 16 23 C -0.31 -14.39 9.73 22.98 0.22 -14.17 16 24 H 0.28 15.57 6.87 -92.71 -0.64 14.93 16 25 H 0.10 5.22 7.01 -2.91 -0.02 5.20 16 26 H 0.15 6.27 8.06 -2.91 -0.02 6.25 16 27 H 0.43 10.12 8.70 -92.70 -0.81 9.31 16 28 H 0.07 1.77 6.86 -2.39 -0.02 1.75 16 29 H 0.10 1.65 8.14 -2.39 -0.02 1.63 16 30 H 0.10 1.46 8.14 -2.38 -0.02 1.44 16 31 H 0.12 1.42 8.14 -2.39 -0.02 1.41 16 32 H 0.13 1.88 8.14 -2.38 -0.02 1.86 16 33 H 0.08 1.81 8.10 -2.39 -0.02 1.79 16 34 H 0.12 5.06 8.06 -2.91 -0.02 5.04 16 Total: -1.00 -67.01 301.52 2.93 -64.09 By element: Atomic # 1 Polarization: 30.85 SS G_CDS: 0.45 Total: 31.30 kcal Atomic # 6 Polarization: -19.52 SS G_CDS: 4.65 Total: -14.87 kcal Atomic # 7 Polarization: -91.94 SS G_CDS: -2.88 Total: -94.82 kcal Atomic # 8 Polarization: -21.54 SS G_CDS: -0.04 Total: -21.58 kcal Atomic # 14 Polarization: 41.04 SS G_CDS: 2.06 Total: 43.10 kcal Atomic # 16 Polarization: -5.91 SS G_CDS: -1.31 Total: -7.22 kcal Total: -67.01 2.93 -64.09 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000334695943.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.254 kcal (2) G-P(sol) polarization free energy of solvation -67.015 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.760 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.928 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.087 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.833 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds