Wall clock time and date at job start Tue Mar 31 2020 00:30:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30668 * 1 3 3 Si 1.86798 * 120.00221 * 2 1 4 4 H 1.48505 * 109.47402 * 274.98481 * 3 2 1 5 5 H 1.48501 * 109.46965 * 34.98691 * 3 2 1 6 6 H 1.48503 * 109.46963 * 154.98517 * 3 2 1 7 7 C 1.40048 * 119.99857 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00473 * 186.14820 * 7 2 1 9 9 C 1.46379 * 120.00103 * 6.15167 * 7 2 1 10 10 O 1.21687 * 119.99716 * 353.93775 * 9 7 2 11 11 N 1.34777 * 120.00065 * 173.93882 * 9 7 2 12 12 C 1.46504 * 119.99657 * 179.97438 * 11 9 7 13 13 H 1.09002 * 113.40250 * 21.37238 * 12 11 9 14 14 C 1.52881 * 114.37405 * 154.99911 * 12 11 9 15 15 N 1.46361 * 90.57008 * 113.43493 * 14 12 11 16 16 C 1.40027 * 134.66538 * 179.97438 * 15 14 12 17 17 C 1.38851 * 120.04746 * 179.97438 * 16 15 14 18 18 C 1.38108 * 119.95546 * 179.97438 * 17 16 15 19 19 C 1.38470 * 120.04795 * 0.02562 * 18 17 16 20 20 F 1.35098 * 119.95845 * 180.02562 * 19 18 17 21 21 C 1.38478 * 120.08897 * 359.97438 * 19 18 17 22 22 C 1.38108 * 120.04558 * 359.97438 * 21 19 18 23 23 C 1.34602 * 90.66445 * 0.23545 * 15 14 12 24 24 O 1.21293 * 131.84305 * 179.76321 * 23 15 14 25 25 H 0.97002 * 119.99568 * 359.97438 * 1 2 3 26 26 H 0.96991 * 119.99817 * 359.97438 * 11 9 7 27 27 H 1.08996 * 113.05515 * 357.97664 * 14 12 11 28 28 H 1.09002 * 112.98870 * 228.87080 * 14 12 11 29 29 H 1.07995 * 120.01930 * 0.02562 * 17 16 15 30 30 H 1.08001 * 119.97665 * 179.72292 * 18 17 16 31 31 H 1.08001 * 119.97840 * 179.97438 * 21 19 18 32 32 H 1.08002 * 120.02651 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2407 1.6177 0.0000 4 1 2.3829 2.1073 -1.3948 5 1 1.4949 2.6199 0.8028 6 1 3.5870 1.4119 0.5920 7 6 2.0069 -1.2129 -0.0005 8 1 3.0822 -1.2157 0.0996 9 6 1.2813 -2.4768 -0.1370 10 8 0.0644 -2.4827 -0.1389 11 7 1.9610 -3.6341 -0.2604 12 6 1.2347 -4.8992 -0.3963 13 1 0.2113 -4.7750 -0.7504 14 6 2.0184 -6.0035 -1.1059 15 7 2.0659 -6.7847 0.1310 16 6 2.6076 -8.0244 0.4920 17 6 2.4723 -8.4898 1.7932 18 6 3.0069 -9.7131 2.1471 19 6 3.6781 -10.4750 1.2056 20 9 4.1999 -11.6715 1.5536 21 6 3.8142 -10.0126 -0.0926 22 6 3.2801 -8.7904 -0.4509 23 6 1.3721 -5.8303 0.7788 24 8 0.9865 -5.7481 1.9259 25 1 -0.4849 0.8401 0.0004 26 1 2.9309 -3.6294 -0.2591 27 1 3.0025 -5.6790 -1.4438 28 1 1.4472 -6.4903 -1.8964 29 1 1.9486 -7.8961 2.5277 30 1 2.9057 -10.0734 3.1602 31 1 4.3383 -10.6082 -0.8254 32 1 3.3861 -8.4303 -1.4636 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000336550583.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:30:21 Heat of formation + Delta-G solvation = -54.046986 kcal Electronic energy + Delta-G solvation = -20216.549505 eV Core-core repulsion = 16671.868200 eV Total energy + Delta-G solvation = -3544.681305 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 278.085 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -48.97624 -41.30772 -38.83958 -37.19133 -36.36241 -33.27214 -32.44100 -31.38867 -30.88983 -27.41884 -26.00328 -24.58456 -22.90824 -22.57337 -20.32963 -19.25053 -17.85146 -17.38823 -17.18493 -17.00839 -16.37906 -15.68946 -15.68251 -15.40149 -14.80060 -14.28260 -13.95919 -13.78781 -13.50116 -13.32337 -13.04726 -12.72944 -12.65719 -12.55202 -12.08731 -11.59854 -11.24818 -11.23006 -11.08542 -10.60558 -10.32550 -10.24796 -10.06644 -9.38299 -8.96200 -7.95749 -7.88480 -7.82961 -6.33355 -4.78904 0.89652 0.98499 2.55161 2.68921 3.08129 3.16053 3.19659 3.49758 3.92013 4.00561 4.13015 4.36615 4.46386 4.60852 4.61284 4.69857 4.98471 5.08731 5.20384 5.31296 5.44233 5.62181 5.70531 5.86272 5.90704 6.00241 6.00930 6.44341 6.63955 6.88137 7.31910 7.56591 7.77114 8.13504 8.20034 8.88820 9.22976 10.40368 10.59581 Molecular weight = 278.09amu Principal moments of inertia in cm(-1) A = 0.043159 B = 0.003236 C = 0.003210 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 648.614820 B = 8651.093015 C = 8719.538638 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.762 5.762 2 C 0.087 3.913 3 Si 0.912 3.088 4 H -0.271 1.271 5 H -0.278 1.278 6 H -0.264 1.264 7 C -0.540 4.540 8 H 0.071 0.929 9 C 0.553 3.447 10 O -0.570 6.570 11 N -0.734 5.734 12 C 0.130 3.870 13 H 0.147 0.853 14 C 0.080 3.920 15 N -0.585 5.585 16 C 0.190 3.810 17 C -0.131 4.131 18 C -0.115 4.115 19 C 0.058 3.942 20 F -0.144 7.144 21 C -0.118 4.118 22 C -0.135 4.135 23 C 0.495 3.505 24 O -0.485 6.485 25 H 0.271 0.729 26 H 0.389 0.611 27 H 0.095 0.905 28 H 0.098 0.902 29 H 0.142 0.858 30 H 0.139 0.861 31 H 0.138 0.862 32 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.057 -15.912 -3.393 18.156 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.390 5.390 2 C -0.134 4.134 3 Si 0.737 3.263 4 H -0.197 1.197 5 H -0.204 1.204 6 H -0.188 1.188 7 C -0.577 4.577 8 H 0.090 0.910 9 C 0.359 3.641 10 O -0.451 6.451 11 N -0.389 5.389 12 C 0.017 3.983 13 H 0.164 0.836 14 C -0.043 4.043 15 N -0.312 5.312 16 C 0.095 3.905 17 C -0.152 4.152 18 C -0.135 4.135 19 C 0.038 3.962 20 F -0.123 7.123 21 C -0.138 4.138 22 C -0.156 4.156 23 C 0.280 3.720 24 O -0.354 6.354 25 H 0.082 0.918 26 H 0.221 0.779 27 H 0.114 0.886 28 H 0.116 0.884 29 H 0.160 0.840 30 H 0.157 0.843 31 H 0.156 0.844 32 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 6.789 -15.829 -2.670 17.429 hybrid contribution 1.115 0.324 0.120 1.168 sum 7.904 -15.505 -2.549 17.589 Atomic orbital electron populations 1.70011 1.07142 1.27678 1.34186 1.25722 0.94673 1.00471 0.92522 0.86282 0.80209 0.81113 0.78743 1.19678 1.20355 1.18805 1.20816 0.94256 0.89029 1.53568 0.91031 1.18389 0.87303 0.81971 0.76431 1.90628 1.13922 1.85707 1.54886 1.46025 1.08683 1.03451 1.80727 1.21853 1.00533 0.85372 0.90501 0.83567 1.23273 1.02658 0.90374 0.87961 1.47859 1.52796 1.15985 1.14556 1.17723 0.94573 0.84647 0.93511 1.20836 1.02531 0.96547 0.95289 1.20956 0.98380 0.94336 0.99801 1.17582 1.01216 0.83250 0.94195 1.91478 1.84966 1.43115 1.92716 1.20901 1.01267 0.96670 0.94942 1.20560 1.00986 0.94519 0.99506 1.24204 0.75704 0.82262 0.89800 1.90672 1.48851 1.76526 1.19324 0.91816 0.77850 0.88641 0.88361 0.83990 0.84349 0.84377 0.84577 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.76 -22.01 11.85 55.55 0.66 -21.35 16 2 C 0.09 2.32 5.49 -17.37 -0.10 2.23 16 3 Si 0.91 19.32 29.56 -169.99 -5.03 14.29 16 4 H -0.27 -5.59 7.11 56.52 0.40 -5.19 16 5 H -0.28 -5.83 7.11 56.52 0.40 -5.43 16 6 H -0.26 -5.42 7.11 56.52 0.40 -5.02 16 7 C -0.54 -14.47 9.53 -35.63 -0.34 -14.81 16 8 H 0.07 1.74 7.85 -52.49 -0.41 1.33 16 9 C 0.55 14.80 7.74 -12.99 -0.10 14.70 16 10 O -0.57 -17.52 14.63 5.20 0.08 -17.44 16 11 N -0.73 -14.86 5.38 -56.47 -0.30 -15.16 16 12 C 0.13 2.23 4.69 -69.21 -0.32 1.90 16 13 H 0.15 2.66 7.44 -51.93 -0.39 2.27 16 14 C 0.08 0.92 8.13 -16.45 -0.13 0.79 16 15 N -0.58 -8.12 3.56 -138.57 -0.49 -8.61 16 16 C 0.19 2.43 6.75 -83.66 -0.56 1.86 16 17 C -0.13 -1.72 9.67 -39.40 -0.38 -2.10 16 18 C -0.12 -1.29 10.02 -39.54 -0.40 -1.69 16 19 C 0.06 0.63 7.30 -39.41 -0.29 0.35 16 20 F -0.14 -1.63 17.26 2.25 0.04 -1.59 16 21 C -0.12 -1.13 10.02 -39.54 -0.40 -1.53 16 22 C -0.13 -1.35 9.73 -39.40 -0.38 -1.74 16 23 C 0.49 8.93 8.71 -23.41 -0.20 8.73 16 24 O -0.49 -10.72 16.93 5.55 0.09 -10.63 16 25 H 0.27 7.08 8.29 -40.82 -0.34 6.74 16 26 H 0.39 6.75 8.70 -40.82 -0.36 6.39 16 27 H 0.10 0.91 8.09 -51.93 -0.42 0.49 16 28 H 0.10 0.85 8.14 -51.93 -0.42 0.43 16 29 H 0.14 2.08 6.89 -52.49 -0.36 1.72 16 30 H 0.14 1.29 8.06 -52.49 -0.42 0.86 16 31 H 0.14 0.99 8.06 -52.49 -0.42 0.56 16 32 H 0.14 1.05 7.85 -52.49 -0.41 0.64 16 LS Contribution 297.66 15.07 4.49 4.49 Total: -1.00 -34.68 297.66 -6.83 -41.51 By element: Atomic # 1 Polarization: 8.57 SS G_CDS: -2.75 Total: 5.82 kcal Atomic # 6 Polarization: 12.29 SS G_CDS: -3.61 Total: 8.68 kcal Atomic # 7 Polarization: -44.99 SS G_CDS: -0.14 Total: -45.13 kcal Atomic # 8 Polarization: -28.24 SS G_CDS: 0.17 Total: -28.07 kcal Atomic # 9 Polarization: -1.63 SS G_CDS: 0.04 Total: -1.59 kcal Atomic # 14 Polarization: 19.32 SS G_CDS: -5.03 Total: 14.29 kcal Total LS contribution 4.49 Total: 4.49 kcal Total: -34.68 -6.83 -41.51 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336550583.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.536 kcal (2) G-P(sol) polarization free energy of solvation -34.684 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.221 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.826 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.511 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.047 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds