Wall clock time and date at job start Tue Mar 31 2020 00:30:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30668 * 1 3 3 Si 1.86798 * 120.00221 * 2 1 4 4 H 1.48505 * 109.47402 * 274.98481 * 3 2 1 5 5 H 1.48501 * 109.46965 * 34.98691 * 3 2 1 6 6 H 1.48503 * 109.46963 * 154.98517 * 3 2 1 7 7 C 1.40048 * 119.99857 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00473 * 186.14820 * 7 2 1 9 9 C 1.46379 * 120.00103 * 6.15167 * 7 2 1 10 10 O 1.21687 * 119.99716 * 353.93775 * 9 7 2 11 11 N 1.34777 * 120.00065 * 173.93882 * 9 7 2 12 12 C 1.46504 * 119.99657 * 179.97438 * 11 9 7 13 13 H 1.09002 * 113.40250 * 21.37238 * 12 11 9 14 14 C 1.52881 * 114.37405 * 154.99911 * 12 11 9 15 15 N 1.46361 * 90.57008 * 113.43493 * 14 12 11 16 16 C 1.40027 * 134.66538 * 179.97438 * 15 14 12 17 17 C 1.38851 * 120.04746 * 179.97438 * 16 15 14 18 18 C 1.38108 * 119.95546 * 179.97438 * 17 16 15 19 19 C 1.38470 * 120.04795 * 0.02562 * 18 17 16 20 20 F 1.35098 * 119.95845 * 180.02562 * 19 18 17 21 21 C 1.38478 * 120.08897 * 359.97438 * 19 18 17 22 22 C 1.38108 * 120.04558 * 359.97438 * 21 19 18 23 23 C 1.34602 * 90.66445 * 0.23545 * 15 14 12 24 24 O 1.21293 * 131.84305 * 179.76321 * 23 15 14 25 25 H 0.97002 * 119.99568 * 359.97438 * 1 2 3 26 26 H 0.96991 * 119.99817 * 359.97438 * 11 9 7 27 27 H 1.08996 * 113.05515 * 357.97664 * 14 12 11 28 28 H 1.09002 * 112.98870 * 228.87080 * 14 12 11 29 29 H 1.07995 * 120.01930 * 0.02562 * 17 16 15 30 30 H 1.08001 * 119.97665 * 179.72292 * 18 17 16 31 31 H 1.08001 * 119.97840 * 179.97438 * 21 19 18 32 32 H 1.08002 * 120.02651 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2407 1.6177 0.0000 4 1 2.3829 2.1073 -1.3948 5 1 1.4949 2.6199 0.8028 6 1 3.5870 1.4119 0.5920 7 6 2.0069 -1.2129 -0.0005 8 1 3.0822 -1.2157 0.0996 9 6 1.2813 -2.4768 -0.1370 10 8 0.0644 -2.4827 -0.1389 11 7 1.9610 -3.6341 -0.2604 12 6 1.2347 -4.8992 -0.3963 13 1 0.2113 -4.7750 -0.7504 14 6 2.0184 -6.0035 -1.1059 15 7 2.0659 -6.7847 0.1310 16 6 2.6076 -8.0244 0.4920 17 6 2.4723 -8.4898 1.7932 18 6 3.0069 -9.7131 2.1471 19 6 3.6781 -10.4750 1.2056 20 9 4.1999 -11.6715 1.5536 21 6 3.8142 -10.0126 -0.0926 22 6 3.2801 -8.7904 -0.4509 23 6 1.3721 -5.8303 0.7788 24 8 0.9865 -5.7481 1.9259 25 1 -0.4849 0.8401 0.0004 26 1 2.9309 -3.6294 -0.2591 27 1 3.0025 -5.6790 -1.4438 28 1 1.4472 -6.4903 -1.8964 29 1 1.9486 -7.8961 2.5277 30 1 2.9057 -10.0734 3.1602 31 1 4.3383 -10.6082 -0.8254 32 1 3.3861 -8.4303 -1.4636 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000336550583.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:30:19 Heat of formation + Delta-G solvation = -79.658068 kcal Electronic energy + Delta-G solvation = -20217.660085 eV Core-core repulsion = 16671.868200 eV Total energy + Delta-G solvation = -3545.791885 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 278.085 amu Computer time = -0.21 seconds Orbital eigenvalues (eV) -49.85805 -42.55910 -39.86460 -39.06495 -37.83162 -34.97787 -34.35223 -32.26422 -32.14449 -28.96675 -27.57078 -25.74500 -23.83599 -23.71810 -22.09584 -20.55035 -19.19004 -18.79504 -18.36040 -18.15310 -17.87127 -17.30071 -16.78374 -16.57057 -16.05217 -15.69356 -15.38839 -14.86694 -14.63632 -14.51080 -14.30507 -14.21597 -14.12234 -13.68724 -13.46813 -13.08255 -12.87718 -12.73879 -12.61068 -12.12692 -12.00248 -11.57399 -11.26437 -10.92929 -10.22675 -9.96376 -9.64757 -8.94049 -8.32753 -6.88466 -0.08204 0.13657 1.23344 1.43070 1.43895 1.56936 1.60506 2.25061 2.36590 2.57351 2.81266 2.95632 3.26678 3.37261 3.61912 3.73537 3.81095 4.13012 4.14988 4.16500 4.43438 4.57701 4.73312 4.79568 4.91393 5.08307 5.08912 5.32206 5.46928 5.57411 5.81200 5.86971 5.98413 6.19586 6.84723 6.88648 7.39757 8.40823 8.62877 Molecular weight = 278.09amu Principal moments of inertia in cm(-1) A = 0.043159 B = 0.003236 C = 0.003210 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 648.614820 B = 8651.093015 C = 8719.538638 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.818 5.818 2 C 0.029 3.971 3 Si 1.000 3.000 4 H -0.259 1.259 5 H -0.277 1.277 6 H -0.249 1.249 7 C -0.568 4.568 8 H 0.092 0.908 9 C 0.540 3.460 10 O -0.623 6.623 11 N -0.722 5.722 12 C 0.112 3.888 13 H 0.128 0.872 14 C 0.106 3.894 15 N -0.570 5.570 16 C 0.164 3.836 17 C -0.150 4.150 18 C -0.119 4.119 19 C 0.056 3.944 20 F -0.145 7.145 21 C -0.108 4.108 22 C -0.115 4.115 23 C 0.483 3.517 24 O -0.543 6.543 25 H 0.276 0.724 26 H 0.404 0.596 27 H 0.129 0.871 28 H 0.140 0.860 29 H 0.114 0.886 30 H 0.149 0.851 31 H 0.173 0.827 32 H 0.172 0.828 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.995 -17.048 -5.536 21.027 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.447 5.447 2 C -0.187 4.187 3 Si 0.819 3.181 4 H -0.183 1.183 5 H -0.202 1.202 6 H -0.172 1.172 7 C -0.604 4.604 8 H 0.111 0.889 9 C 0.346 3.654 10 O -0.509 6.509 11 N -0.377 5.377 12 C 0.000 4.000 13 H 0.146 0.854 14 C -0.015 4.015 15 N -0.297 5.297 16 C 0.071 3.929 17 C -0.171 4.171 18 C -0.139 4.139 19 C 0.036 3.964 20 F -0.124 7.124 21 C -0.127 4.127 22 C -0.135 4.135 23 C 0.269 3.731 24 O -0.417 6.417 25 H 0.086 0.914 26 H 0.240 0.760 27 H 0.147 0.853 28 H 0.158 0.842 29 H 0.132 0.868 30 H 0.167 0.833 31 H 0.190 0.810 32 H 0.189 0.811 Dipole moment (debyes) X Y Z Total from point charges 9.809 -17.059 -4.858 20.269 hybrid contribution 0.244 0.458 0.809 0.961 sum 10.053 -16.601 -4.049 19.825 Atomic orbital electron populations 1.70178 1.09578 1.29182 1.35780 1.26986 0.95508 1.05037 0.91168 0.84969 0.78793 0.74996 0.79318 1.18310 1.20209 1.17240 1.21396 0.95450 0.89802 1.53776 0.88945 1.18683 0.86864 0.83934 0.75942 1.90584 1.16136 1.87056 1.57113 1.45459 1.09316 1.03348 1.79570 1.22047 1.00703 0.85292 0.91920 0.85443 1.23352 1.03916 0.87113 0.87140 1.47675 1.51448 1.15948 1.14592 1.17958 0.96280 0.84569 0.94138 1.20744 1.03529 0.97295 0.95534 1.21034 0.98291 0.93762 1.00777 1.17774 1.00789 0.83033 0.94850 1.91482 1.84906 1.43169 1.92839 1.21282 1.00211 0.96477 0.94742 1.20885 0.98707 0.93723 1.00184 1.24427 0.75930 0.83569 0.89126 1.90633 1.51491 1.78026 1.21546 0.91402 0.76006 0.85337 0.84178 0.86771 0.83312 0.81000 0.81069 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -48.90 11.85 21.84 0.26 -48.64 16 2 C 0.03 1.55 5.49 85.31 0.47 2.02 16 3 Si 1.00 39.51 29.56 68.60 2.03 41.53 16 4 H -0.26 -9.61 7.11 99.48 0.71 -8.90 16 5 H -0.28 -10.76 7.11 99.48 0.71 -10.06 16 6 H -0.25 -9.14 7.11 99.48 0.71 -8.43 16 7 C -0.57 -30.78 9.53 24.83 0.24 -30.55 16 8 H 0.09 4.43 7.85 -2.91 -0.02 4.41 16 9 C 0.54 29.82 7.74 86.36 0.67 30.49 16 10 O -0.62 -40.29 14.63 -4.31 -0.06 -40.36 16 11 N -0.72 -29.49 5.38 -450.79 -2.42 -31.92 16 12 C 0.11 3.86 4.69 44.16 0.21 4.07 16 13 H 0.13 4.87 7.44 -2.39 -0.02 4.85 16 14 C 0.11 2.08 8.13 78.41 0.64 2.72 16 15 N -0.57 -14.96 3.56 -710.80 -2.53 -17.49 16 16 C 0.16 3.86 6.75 38.13 0.26 4.12 16 17 C -0.15 -3.94 9.67 22.39 0.22 -3.73 16 18 C -0.12 -2.57 10.02 22.29 0.22 -2.35 16 19 C 0.06 1.07 7.30 22.38 0.16 1.23 16 20 F -0.15 -2.92 17.26 44.97 0.78 -2.14 16 21 C -0.11 -1.59 10.02 22.30 0.22 -1.36 16 22 C -0.11 -1.79 9.73 22.39 0.22 -1.57 16 23 C 0.48 17.92 8.71 79.69 0.69 18.62 16 24 O -0.54 -25.69 16.93 -3.07 -0.05 -25.74 16 25 H 0.28 14.93 8.29 -92.71 -0.77 14.16 16 26 H 0.40 13.68 8.70 -92.71 -0.81 12.87 16 27 H 0.13 1.79 8.09 -2.39 -0.02 1.77 16 28 H 0.14 1.72 8.14 -2.39 -0.02 1.70 16 29 H 0.11 3.63 6.89 -2.91 -0.02 3.61 16 30 H 0.15 2.74 8.06 -2.91 -0.02 2.71 16 31 H 0.17 1.43 8.06 -2.91 -0.02 1.40 16 32 H 0.17 1.50 7.85 -2.91 -0.02 1.48 16 Total: -1.00 -82.03 297.66 2.58 -79.45 By element: Atomic # 1 Polarization: 21.20 SS G_CDS: 0.38 Total: 21.58 kcal Atomic # 6 Polarization: 19.50 SS G_CDS: 4.21 Total: 23.72 kcal Atomic # 7 Polarization: -93.35 SS G_CDS: -4.70 Total: -98.05 kcal Atomic # 8 Polarization: -65.98 SS G_CDS: -0.11 Total: -66.10 kcal Atomic # 9 Polarization: -2.92 SS G_CDS: 0.78 Total: -2.14 kcal Atomic # 14 Polarization: 39.51 SS G_CDS: 2.03 Total: 41.53 kcal Total: -82.03 2.58 -79.45 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336550583.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.204 kcal (2) G-P(sol) polarization free energy of solvation -82.033 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.238 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.579 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.454 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.658 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = -0.21 seconds