Wall clock time and date at job start Tue Mar 31 2020 00:30:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30672 * 1 3 3 Si 1.86796 * 120.00112 * 2 1 4 4 H 1.48504 * 109.47183 * 179.97438 * 3 2 1 5 5 H 1.48504 * 109.47205 * 299.99980 * 3 2 1 6 6 H 1.48505 * 109.47293 * 59.99645 * 3 2 1 7 7 C 1.40046 * 119.99896 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00001 * 180.02562 * 7 2 1 9 9 C 1.46375 * 120.00211 * 359.97438 * 7 2 1 10 10 O 1.21698 * 119.99784 * 0.02562 * 9 7 2 11 11 N 1.34777 * 120.00307 * 179.97438 * 9 7 2 12 12 C 1.46502 * 119.99966 * 180.02562 * 11 9 7 13 13 H 1.08999 * 112.59268 * 334.36266 * 12 11 9 14 14 C 1.53209 * 113.27222 * 203.98501 * 12 11 9 15 15 N 1.46758 * 83.88243 * 244.99502 * 14 12 11 16 16 C 1.40034 * 130.88218 * 180.02562 * 15 14 12 17 17 C 1.38855 * 120.04357 * 359.67936 * 16 15 14 18 18 C 1.38116 * 119.95403 * 179.72401 * 17 16 15 19 19 C 1.38474 * 120.04351 * 0.56651 * 18 17 16 20 20 F 1.35101 * 119.95523 * 179.70042 * 19 18 17 21 21 C 1.38475 * 120.09157 * 359.68724 * 19 18 17 22 22 C 1.38113 * 120.04434 * 0.03745 * 21 19 18 23 23 C 1.35079 * 98.23556 * 359.97438 * 15 14 12 24 24 O 1.21294 * 135.56828 * 180.25826 * 23 15 14 25 25 H 0.97006 * 120.00048 * 0.02562 * 1 2 3 26 26 H 0.96994 * 119.99565 * 0.02562 * 11 9 7 27 27 H 1.09005 * 114.11889 * 358.71768 * 14 12 11 28 28 H 1.08994 * 114.12323 * 131.08231 * 14 12 11 29 29 H 1.07998 * 120.02225 * 359.97438 * 17 16 15 30 30 H 1.07992 * 119.98012 * 180.27622 * 18 17 16 31 31 H 1.07999 * 119.98042 * 180.02562 * 21 19 18 32 32 H 1.08001 * 120.02592 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2407 1.6177 0.0000 4 1 3.7008 1.3463 0.0006 5 1 1.8820 2.3964 -1.2125 6 1 1.8820 2.3965 1.2125 7 6 2.0069 -1.2128 0.0005 8 1 3.0869 -1.2129 0.0010 9 6 1.2751 -2.4805 0.0017 10 8 0.0581 -2.4805 0.0017 11 7 1.9489 -3.6477 0.0017 12 6 1.2164 -4.9164 0.0022 13 1 0.2214 -4.8253 0.4380 14 6 2.0275 -6.0835 0.5743 15 7 1.9336 -6.6129 -0.7913 16 6 2.4310 -7.7957 -1.3520 17 6 3.1550 -8.6853 -0.5693 18 6 3.6399 -9.8541 -1.1228 19 6 3.4144 -10.1335 -2.4602 20 9 3.8947 -11.2744 -3.0013 21 6 2.6972 -9.2452 -3.2438 22 6 2.2057 -8.0780 -2.6927 23 6 1.2180 -5.6070 -1.3399 24 8 0.7661 -5.3649 -2.4391 25 1 -0.4850 0.8401 -0.0004 26 1 2.9189 -3.6477 0.0013 27 1 3.0390 -5.8156 0.8796 28 1 1.4950 -6.6724 1.3211 29 1 3.3354 -8.4653 0.4725 30 1 4.1992 -10.5483 -0.5134 31 1 2.5221 -9.4651 -4.2865 32 1 1.6467 -7.3852 -3.3042 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000336550584.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:30:23 Heat of formation + Delta-G solvation = -82.560032 kcal Electronic energy + Delta-G solvation = -20302.386701 eV Core-core repulsion = 16756.468977 eV Total energy + Delta-G solvation = -3545.917724 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 278.085 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -49.84776 -42.45944 -39.80533 -39.01934 -37.95943 -34.92620 -34.29401 -32.23837 -32.00700 -28.84924 -27.49396 -26.13358 -23.83712 -23.51862 -22.04332 -20.44454 -19.14926 -18.86600 -18.39823 -18.13762 -17.84263 -17.26668 -16.71574 -16.55923 -15.98007 -15.65529 -15.31751 -15.00305 -14.63109 -14.45631 -14.37292 -14.20616 -14.08473 -13.80648 -13.53184 -13.05393 -12.81884 -12.73392 -12.59170 -12.11295 -11.96708 -11.50903 -11.26568 -10.94623 -10.20338 -9.94309 -9.61254 -8.92676 -8.31491 -6.88165 -0.05435 0.15890 1.23883 1.41518 1.43041 1.59850 1.61162 2.24832 2.40422 2.59951 2.91506 2.98768 3.28627 3.34764 3.64107 3.76215 3.83650 4.15840 4.17890 4.18947 4.37954 4.58597 4.77569 4.81275 4.93568 5.10495 5.11483 5.32046 5.35307 5.63551 5.82029 5.88359 6.02235 6.20532 6.85294 6.92459 7.42338 8.42920 8.64024 Molecular weight = 278.09amu Principal moments of inertia in cm(-1) A = 0.041396 B = 0.003328 C = 0.003315 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 676.224562 B = 8412.111166 C = 8443.188579 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.820 5.820 2 C 0.027 3.973 3 Si 0.999 3.001 4 H -0.244 1.244 5 H -0.274 1.274 6 H -0.266 1.266 7 C -0.567 4.567 8 H 0.093 0.907 9 C 0.538 3.462 10 O -0.624 6.624 11 N -0.729 5.729 12 C 0.094 3.906 13 H 0.112 0.888 14 C 0.127 3.873 15 N -0.566 5.566 16 C 0.141 3.859 17 C -0.114 4.114 18 C -0.110 4.110 19 C 0.054 3.946 20 F -0.146 7.146 21 C -0.122 4.122 22 C -0.153 4.153 23 C 0.506 3.494 24 O -0.526 6.526 25 H 0.275 0.725 26 H 0.404 0.596 27 H 0.138 0.862 28 H 0.149 0.851 29 H 0.174 0.826 30 H 0.171 0.829 31 H 0.147 0.853 32 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.092 -17.591 3.231 21.045 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.449 5.449 2 C -0.188 4.188 3 Si 0.819 3.181 4 H -0.167 1.167 5 H -0.200 1.200 6 H -0.191 1.191 7 C -0.603 4.603 8 H 0.111 0.889 9 C 0.343 3.657 10 O -0.511 6.511 11 N -0.384 5.384 12 C -0.017 4.017 13 H 0.129 0.871 14 C 0.007 3.993 15 N -0.293 5.293 16 C 0.047 3.953 17 C -0.135 4.135 18 C -0.129 4.129 19 C 0.034 3.966 20 F -0.125 7.125 21 C -0.141 4.141 22 C -0.173 4.173 23 C 0.292 3.708 24 O -0.399 6.399 25 H 0.085 0.915 26 H 0.240 0.760 27 H 0.155 0.845 28 H 0.167 0.833 29 H 0.191 0.809 30 H 0.189 0.811 31 H 0.164 0.836 32 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges 9.839 -17.458 2.586 20.206 hybrid contribution 0.160 0.578 -0.820 1.016 sum 10.000 -16.880 1.765 19.699 Atomic orbital electron populations 1.70189 1.09576 1.29026 1.36102 1.26998 0.95532 1.05091 0.91225 0.84944 0.79470 0.75328 0.78389 1.16693 1.19962 1.19116 1.21440 0.94957 0.89633 1.54313 0.88878 1.18703 0.86918 0.84214 0.75821 1.90588 1.16229 1.87476 1.56764 1.45564 1.09306 1.02915 1.80626 1.22845 1.00349 0.86724 0.91809 0.87071 1.23695 1.03652 0.89452 0.82499 1.48907 1.50531 1.17137 1.12770 1.18370 0.96564 0.87533 0.92786 1.20915 0.98449 0.92639 1.01464 1.21293 1.00494 0.98201 0.92889 1.17783 1.01135 0.84430 0.93300 1.91478 1.86538 1.47993 1.86507 1.21035 0.98400 0.93316 1.01332 1.20782 1.03562 0.98539 0.94449 1.23496 0.75461 0.81714 0.90110 1.90684 1.49527 1.73425 1.26263 0.91502 0.76005 0.84462 0.83327 0.80908 0.81123 0.83558 0.86836 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -49.51 11.83 21.83 0.26 -49.25 16 2 C 0.03 1.47 5.50 85.30 0.47 1.94 16 3 Si 1.00 39.92 29.56 68.60 2.03 41.94 16 4 H -0.24 -8.88 7.11 99.48 0.71 -8.18 16 5 H -0.27 -10.81 7.11 99.48 0.71 -10.11 16 6 H -0.27 -10.16 7.11 99.48 0.71 -9.45 16 7 C -0.57 -30.88 9.54 24.83 0.24 -30.64 16 8 H 0.09 4.46 7.85 -2.91 -0.02 4.44 16 9 C 0.54 29.89 7.75 86.36 0.67 30.56 16 10 O -0.62 -40.82 14.63 -4.34 -0.06 -40.89 16 11 N -0.73 -29.65 5.31 -486.02 -2.58 -32.23 16 12 C 0.09 3.21 4.26 49.62 0.21 3.42 16 13 H 0.11 4.28 7.49 -2.39 -0.02 4.26 16 14 C 0.13 2.32 8.27 86.40 0.71 3.03 16 15 N -0.57 -14.64 3.37 -733.23 -2.47 -17.11 16 16 C 0.14 3.33 6.72 38.13 0.26 3.58 16 17 C -0.11 -1.77 9.63 22.39 0.22 -1.55 16 18 C -0.11 -1.64 10.02 22.30 0.22 -1.42 16 19 C 0.05 1.06 7.30 22.38 0.16 1.22 16 20 F -0.15 -3.03 17.27 44.97 0.78 -2.25 16 21 C -0.12 -2.70 10.02 22.30 0.22 -2.48 16 22 C -0.15 -4.07 9.57 22.39 0.21 -3.86 16 23 C 0.51 19.01 9.06 87.68 0.79 19.81 16 24 O -0.53 -25.05 16.78 -3.07 -0.05 -25.10 16 25 H 0.28 15.04 8.29 -92.70 -0.77 14.27 16 26 H 0.40 13.49 8.63 -92.71 -0.80 12.69 16 27 H 0.14 1.66 8.05 -2.38 -0.02 1.64 16 28 H 0.15 1.57 8.14 -2.39 -0.02 1.55 16 29 H 0.17 1.40 7.63 -2.91 -0.02 1.38 16 30 H 0.17 1.47 8.06 -2.91 -0.02 1.44 16 31 H 0.15 2.82 8.06 -2.91 -0.02 2.80 16 32 H 0.11 3.67 6.65 -2.91 -0.02 3.65 16 Total: -1.00 -83.57 296.56 2.67 -80.90 By element: Atomic # 1 Polarization: 20.00 SS G_CDS: 0.38 Total: 20.38 kcal Atomic # 6 Polarization: 19.21 SS G_CDS: 4.39 Total: 23.60 kcal Atomic # 7 Polarization: -93.80 SS G_CDS: -4.80 Total: -98.60 kcal Atomic # 8 Polarization: -65.87 SS G_CDS: -0.12 Total: -65.98 kcal Atomic # 9 Polarization: -3.03 SS G_CDS: 0.78 Total: -2.25 kcal Atomic # 14 Polarization: 39.92 SS G_CDS: 2.03 Total: 41.94 kcal Total: -83.57 2.67 -80.90 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336550584.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.659 kcal (2) G-P(sol) polarization free energy of solvation -83.569 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.228 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.668 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.901 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.560 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds