Wall clock time and date at job start Tue Mar 31 2020 00:19:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30639 * 1 3 3 Si 1.86794 * 119.99991 * 2 1 4 4 H 1.48500 * 109.47160 * 239.99421 * 3 2 1 5 5 H 1.48501 * 109.47629 * 359.97438 * 3 2 1 6 6 H 1.48501 * 109.46918 * 119.99951 * 3 2 1 7 7 C 1.40133 * 119.99709 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99851 * 180.02562 * 7 2 1 9 9 C 1.46117 * 119.99878 * 0.02562 * 7 2 1 10 10 O 1.21756 * 119.99915 * 0.02562 * 9 7 2 11 11 N 1.34773 * 119.99543 * 179.97438 * 9 7 2 12 12 C 1.39561 * 119.99821 * 185.53085 * 11 9 7 13 13 C 1.38894 * 120.05648 * 24.84793 * 12 11 9 14 14 C 1.38644 * 119.86554 * 180.02562 * 13 12 11 15 15 C 1.39035 * 119.99538 * 359.97438 * 14 13 12 16 16 C 1.38181 * 120.12287 * 0.02562 * 15 14 13 17 17 C 1.38306 * 120.11763 * 359.97438 * 16 15 14 18 18 F 1.35104 * 119.99267 * 179.97438 * 17 16 15 19 19 C 1.50688 * 119.78701 * 179.97438 * 15 14 13 20 20 C 1.52899 * 109.51743 * 325.98573 * 19 15 14 21 21 C 1.50470 * 109.92740 * 48.68466 * 20 19 15 22 22 O 1.21296 * 119.61350 * 144.75556 * 21 20 19 23 23 N 1.34556 * 120.77180 * 324.79678 * 21 20 19 24 24 H 0.97003 * 119.99553 * 0.02562 * 1 2 3 25 25 H 0.96998 * 120.00406 * 5.52723 * 11 9 7 26 26 H 1.07996 * 120.06430 * 0.02562 * 13 12 11 27 27 H 1.07998 * 119.94425 * 179.97438 * 16 15 14 28 28 H 1.09004 * 109.46410 * 86.00031 * 19 15 14 29 29 H 1.08997 * 109.46503 * 205.97221 * 19 15 14 30 30 H 1.09001 * 109.39821 * 168.82179 * 20 19 15 31 31 H 1.08992 * 109.39979 * 288.55438 * 20 19 15 32 32 H 0.96997 * 119.76887 * 180.73618 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3064 0.0000 0.0000 3 14 2.2404 1.6177 0.0000 4 1 3.0942 1.6963 -1.2124 5 1 1.2755 2.7465 -0.0006 6 1 3.0941 1.6963 1.2125 7 6 2.0070 -1.2136 0.0005 8 1 3.0870 -1.2136 0.0010 9 6 1.2763 -2.4790 0.0005 10 8 0.0588 -2.4789 -0.0004 11 7 1.9502 -3.6461 0.0005 12 6 1.2572 -4.8519 -0.1159 13 6 0.0115 -4.8819 -0.7294 14 6 -0.6737 -6.0819 -0.8425 15 6 -0.1133 -7.2521 -0.3428 16 6 1.1261 -7.2219 0.2674 17 6 1.8139 -6.0275 0.3829 18 9 3.0253 -6.0008 0.9804 19 6 -0.8624 -8.5536 -0.4678 20 6 -2.3642 -8.2920 -0.3495 21 6 -2.7598 -7.1567 -1.2542 22 8 -3.8395 -7.1787 -1.8066 23 7 -1.9296 -6.1176 -1.4583 24 1 -0.4849 0.8401 -0.0004 25 1 2.9168 -3.6482 0.0814 26 1 -0.4225 -3.9723 -1.1175 27 1 1.5585 -8.1325 0.6549 28 1 -0.6475 -9.0048 -1.4365 29 1 -0.5481 -9.2312 0.3260 30 1 -2.9117 -9.1902 -0.6353 31 1 -2.6067 -8.0345 0.6814 32 1 -2.2039 -5.3883 -2.0360 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000346361666.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:19:25 Heat of formation + Delta-G solvation = -101.669987 kcal Electronic energy + Delta-G solvation = -20958.142911 eV Core-core repulsion = 17411.396518 eV Total energy + Delta-G solvation = -3546.746394 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 278.085 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -48.42358 -40.74420 -38.91539 -37.48283 -34.97820 -33.95656 -32.95050 -32.47068 -29.38145 -28.50617 -26.49373 -24.27151 -22.87026 -22.51168 -20.54571 -18.95785 -18.32822 -17.24475 -17.03124 -16.62681 -15.98532 -15.63125 -15.41967 -15.12463 -14.97849 -14.18722 -13.97785 -13.62414 -13.51071 -13.24346 -12.87882 -12.77988 -12.55416 -12.23751 -11.78618 -11.48510 -11.34435 -11.19606 -11.01261 -10.76791 -10.46703 -10.34418 -9.97354 -9.44308 -9.02835 -8.06278 -7.76586 -7.19535 -6.48728 -4.97167 1.33080 1.58227 2.61829 3.01964 3.07612 3.09367 3.18345 3.83473 3.89330 4.25324 4.33506 4.47378 4.59892 4.72042 4.84994 5.05089 5.22859 5.37620 5.47658 5.62794 5.66312 5.78926 5.92848 6.00039 6.29334 6.40536 6.76939 6.79311 6.93150 7.15951 7.39750 7.51212 7.77537 7.96930 8.09286 8.70602 8.98141 10.17842 10.40264 Molecular weight = 278.09amu Principal moments of inertia in cm(-1) A = 0.022716 B = 0.004945 C = 0.004123 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1232.288640 B = 5661.047057 C = 6790.073590 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.756 5.756 2 C 0.086 3.914 3 Si 0.916 3.084 4 H -0.265 1.265 5 H -0.278 1.278 6 H -0.265 1.265 7 C -0.533 4.533 8 H 0.074 0.926 9 C 0.539 3.461 10 O -0.556 6.556 11 N -0.687 5.687 12 C 0.199 3.801 13 C -0.150 4.150 14 C 0.169 3.831 15 C -0.153 4.153 16 C -0.093 4.093 17 C 0.011 3.989 18 F -0.145 7.145 19 C -0.065 4.065 20 C -0.138 4.138 21 C 0.522 3.478 22 O -0.540 6.540 23 N -0.655 5.655 24 H 0.275 0.725 25 H 0.400 0.600 26 H 0.168 0.832 27 H 0.135 0.865 28 H 0.078 0.922 29 H 0.087 0.913 30 H 0.105 0.895 31 H 0.103 0.897 32 H 0.413 0.587 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.234 -12.763 -0.336 12.962 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.383 5.383 2 C -0.136 4.136 3 Si 0.740 3.260 4 H -0.190 1.190 5 H -0.203 1.203 6 H -0.190 1.190 7 C -0.569 4.569 8 H 0.092 0.908 9 C 0.347 3.653 10 O -0.438 6.438 11 N -0.327 5.327 12 C 0.096 3.904 13 C -0.174 4.174 14 C 0.073 3.927 15 C -0.157 4.157 16 C -0.113 4.113 17 C -0.013 4.013 18 F -0.124 7.124 19 C -0.102 4.102 20 C -0.178 4.178 21 C 0.311 3.689 22 O -0.417 6.417 23 N -0.299 5.299 24 H 0.086 0.914 25 H 0.234 0.766 26 H 0.185 0.815 27 H 0.153 0.847 28 H 0.096 0.904 29 H 0.105 0.895 30 H 0.123 0.877 31 H 0.121 0.879 32 H 0.251 0.749 Dipole moment (debyes) X Y Z Total from point charges 0.652 -12.677 -0.518 12.704 hybrid contribution 1.182 1.233 0.053 1.709 sum 1.834 -11.444 -0.465 11.600 Atomic orbital electron populations 1.69956 1.07216 1.28256 1.32881 1.25758 0.94758 1.00648 0.92411 0.86283 0.79798 0.80210 0.79744 1.19004 1.20285 1.19003 1.20825 0.93980 0.88780 1.53298 0.90757 1.18425 0.87494 0.81922 0.77425 1.90586 1.13567 1.85665 1.54021 1.44208 1.10269 1.03999 1.74263 1.17749 0.93076 0.85915 0.93666 1.21145 0.95514 0.97652 1.03069 1.17481 0.85528 0.93446 0.96271 1.19013 0.96181 0.93615 1.06904 1.20369 0.94075 0.96342 1.00473 1.17352 0.84617 0.94273 1.05046 1.91420 1.41729 1.97237 1.81968 1.20274 0.92000 0.94649 1.03309 1.21672 0.97863 0.97385 1.00843 1.20710 0.83454 0.83294 0.81478 1.90755 1.22285 1.79078 1.49603 1.43575 1.15125 1.23654 1.47550 0.91433 0.76637 0.81497 0.84702 0.90406 0.89476 0.87674 0.87909 0.74890 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.76 -20.97 11.82 55.55 0.66 -20.31 16 2 C 0.09 2.23 5.50 -17.35 -0.10 2.13 16 3 Si 0.92 18.76 29.56 -169.99 -5.02 13.73 16 4 H -0.27 -5.30 7.11 56.52 0.40 -4.89 16 5 H -0.28 -5.59 7.11 56.52 0.40 -5.18 16 6 H -0.27 -5.32 7.11 56.52 0.40 -4.92 16 7 C -0.53 -13.90 9.53 -35.71 -0.34 -14.25 16 8 H 0.07 1.76 7.85 -52.49 -0.41 1.34 16 9 C 0.54 14.15 7.54 -13.10 -0.10 14.05 16 10 O -0.56 -16.16 12.17 5.14 0.06 -16.10 16 11 N -0.69 -14.79 5.29 -11.17 -0.06 -14.85 16 12 C 0.20 3.91 6.43 -83.70 -0.54 3.37 16 13 C -0.15 -2.92 8.58 -39.19 -0.34 -3.26 16 14 C 0.17 2.73 6.50 -83.72 -0.54 2.18 16 15 C -0.15 -2.07 5.66 -104.35 -0.59 -2.67 16 16 C -0.09 -1.27 9.65 -39.58 -0.38 -1.65 16 17 C 0.01 0.18 7.31 -39.16 -0.29 -0.11 16 18 F -0.14 -2.40 16.81 2.25 0.04 -2.36 16 19 C -0.07 -0.64 6.00 -27.94 -0.17 -0.81 16 20 C -0.14 -1.47 6.07 -28.05 -0.17 -1.64 16 21 C 0.52 7.70 7.72 -11.20 -0.09 7.61 16 22 O -0.54 -9.63 17.91 5.54 0.10 -9.53 16 23 N -0.66 -9.98 5.36 -10.00 -0.05 -10.03 16 24 H 0.27 6.94 8.29 -40.82 -0.34 6.60 16 25 H 0.40 7.61 8.43 -40.82 -0.34 7.27 16 26 H 0.17 3.76 5.78 -52.49 -0.30 3.45 16 27 H 0.14 1.42 8.06 -52.49 -0.42 1.00 16 28 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 29 H 0.09 0.65 8.06 -51.93 -0.42 0.23 16 30 H 0.10 0.92 8.14 -51.93 -0.42 0.50 16 31 H 0.10 1.02 8.14 -51.93 -0.42 0.60 16 32 H 0.41 6.15 8.83 -40.82 -0.36 5.79 16 LS Contribution 286.47 15.07 4.32 4.32 Total: -1.00 -31.83 286.47 -6.26 -38.09 By element: Atomic # 1 Polarization: 14.73 SS G_CDS: -2.66 Total: 12.07 kcal Atomic # 6 Polarization: 8.61 SS G_CDS: -3.64 Total: 4.97 kcal Atomic # 7 Polarization: -45.74 SS G_CDS: 0.54 Total: -45.19 kcal Atomic # 8 Polarization: -25.79 SS G_CDS: 0.16 Total: -25.63 kcal Atomic # 9 Polarization: -2.40 SS G_CDS: 0.04 Total: -2.36 kcal Atomic # 14 Polarization: 18.76 SS G_CDS: -5.02 Total: 13.73 kcal Total LS contribution 4.32 Total: 4.32 kcal Total: -31.83 -6.26 -38.09 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000346361666.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.575 kcal (2) G-P(sol) polarization free energy of solvation -31.830 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.405 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.265 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.095 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.670 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds