Wall clock time and date at job start Tue Mar 31 2020 00:19:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30639 * 1 3 3 Si 1.86794 * 119.99991 * 2 1 4 4 H 1.48500 * 109.47160 * 239.99421 * 3 2 1 5 5 H 1.48501 * 109.47629 * 359.97438 * 3 2 1 6 6 H 1.48501 * 109.46918 * 119.99951 * 3 2 1 7 7 C 1.40133 * 119.99709 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99851 * 180.02562 * 7 2 1 9 9 C 1.46117 * 119.99878 * 0.02562 * 7 2 1 10 10 O 1.21756 * 119.99915 * 0.02562 * 9 7 2 11 11 N 1.34773 * 119.99543 * 179.97438 * 9 7 2 12 12 C 1.39561 * 119.99821 * 185.53085 * 11 9 7 13 13 C 1.38894 * 120.05648 * 24.84793 * 12 11 9 14 14 C 1.38644 * 119.86554 * 180.02562 * 13 12 11 15 15 C 1.39035 * 119.99538 * 359.97438 * 14 13 12 16 16 C 1.38181 * 120.12287 * 0.02562 * 15 14 13 17 17 C 1.38306 * 120.11763 * 359.97438 * 16 15 14 18 18 F 1.35104 * 119.99267 * 179.97438 * 17 16 15 19 19 C 1.50688 * 119.78701 * 179.97438 * 15 14 13 20 20 C 1.52899 * 109.51743 * 325.98573 * 19 15 14 21 21 C 1.50470 * 109.92740 * 48.68466 * 20 19 15 22 22 O 1.21296 * 119.61350 * 144.75556 * 21 20 19 23 23 N 1.34556 * 120.77180 * 324.79678 * 21 20 19 24 24 H 0.97003 * 119.99553 * 0.02562 * 1 2 3 25 25 H 0.96998 * 120.00406 * 5.52723 * 11 9 7 26 26 H 1.07996 * 120.06430 * 0.02562 * 13 12 11 27 27 H 1.07998 * 119.94425 * 179.97438 * 16 15 14 28 28 H 1.09004 * 109.46410 * 86.00031 * 19 15 14 29 29 H 1.08997 * 109.46503 * 205.97221 * 19 15 14 30 30 H 1.09001 * 109.39821 * 168.82179 * 20 19 15 31 31 H 1.08992 * 109.39979 * 288.55438 * 20 19 15 32 32 H 0.96997 * 119.76887 * 180.73618 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3064 0.0000 0.0000 3 14 2.2404 1.6177 0.0000 4 1 3.0942 1.6963 -1.2124 5 1 1.2755 2.7465 -0.0006 6 1 3.0941 1.6963 1.2125 7 6 2.0070 -1.2136 0.0005 8 1 3.0870 -1.2136 0.0010 9 6 1.2763 -2.4790 0.0005 10 8 0.0588 -2.4789 -0.0004 11 7 1.9502 -3.6461 0.0005 12 6 1.2572 -4.8519 -0.1159 13 6 0.0115 -4.8819 -0.7294 14 6 -0.6737 -6.0819 -0.8425 15 6 -0.1133 -7.2521 -0.3428 16 6 1.1261 -7.2219 0.2674 17 6 1.8139 -6.0275 0.3829 18 9 3.0253 -6.0008 0.9804 19 6 -0.8624 -8.5536 -0.4678 20 6 -2.3642 -8.2920 -0.3495 21 6 -2.7598 -7.1567 -1.2542 22 8 -3.8395 -7.1787 -1.8066 23 7 -1.9296 -6.1176 -1.4583 24 1 -0.4849 0.8401 -0.0004 25 1 2.9168 -3.6482 0.0814 26 1 -0.4225 -3.9723 -1.1175 27 1 1.5585 -8.1325 0.6549 28 1 -0.6475 -9.0048 -1.4365 29 1 -0.5481 -9.2312 0.3260 30 1 -2.9117 -9.1902 -0.6353 31 1 -2.6067 -8.0345 0.6814 32 1 -2.2039 -5.3883 -2.0360 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000346361666.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:19:25 Heat of formation + Delta-G solvation = -124.929598 kcal Electronic energy + Delta-G solvation = -20959.151524 eV Core-core repulsion = 17411.396518 eV Total energy + Delta-G solvation = -3547.755006 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 278.085 amu Computer time = 1.79 seconds Orbital eigenvalues (eV) -49.74699 -41.96658 -40.45893 -39.02911 -36.47917 -35.23043 -34.66482 -34.07318 -30.71362 -29.89814 -28.28696 -25.43074 -24.20267 -23.76069 -22.22206 -20.25045 -19.93754 -18.76383 -18.32824 -17.89533 -17.52506 -17.21096 -16.78383 -16.42717 -16.31693 -15.82319 -15.21894 -15.07876 -14.83901 -14.53653 -14.34038 -14.21243 -13.85628 -13.50867 -13.22466 -12.90933 -12.81469 -12.76042 -12.44646 -12.13585 -12.09259 -11.76712 -11.16861 -11.00760 -10.71982 -9.95998 -9.27661 -8.64402 -8.42376 -7.01017 0.02481 0.28032 1.38484 1.38798 1.44790 1.53536 1.98762 2.17538 2.28493 2.64546 2.75834 3.25995 3.42834 3.50567 3.70255 3.79636 4.09613 4.29705 4.33710 4.46193 4.68145 4.81661 4.92546 4.99546 5.12698 5.15353 5.21011 5.35929 5.56712 5.64409 5.68097 6.05844 6.12704 6.23015 6.71967 6.88526 7.17460 8.23347 8.49376 Molecular weight = 278.09amu Principal moments of inertia in cm(-1) A = 0.022716 B = 0.004945 C = 0.004123 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1232.288640 B = 5661.047057 C = 6790.073590 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.809 5.809 2 C 0.033 3.967 3 Si 1.000 3.000 4 H -0.254 1.254 5 H -0.273 1.273 6 H -0.254 1.254 7 C -0.563 4.563 8 H 0.093 0.907 9 C 0.528 3.472 10 O -0.597 6.597 11 N -0.686 5.686 12 C 0.160 3.840 13 C -0.173 4.173 14 C 0.166 3.834 15 C -0.131 4.131 16 C -0.073 4.073 17 C 0.012 3.988 18 F -0.143 7.143 19 C -0.060 4.060 20 C -0.132 4.132 21 C 0.516 3.484 22 O -0.577 6.577 23 N -0.661 5.661 24 H 0.279 0.721 25 H 0.408 0.592 26 H 0.124 0.876 27 H 0.185 0.815 28 H 0.097 0.903 29 H 0.131 0.869 30 H 0.133 0.867 31 H 0.115 0.885 32 H 0.406 0.594 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.655 -15.503 0.506 15.936 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.438 5.438 2 C -0.184 4.184 3 Si 0.819 3.181 4 H -0.177 1.177 5 H -0.198 1.198 6 H -0.177 1.177 7 C -0.598 4.598 8 H 0.111 0.889 9 C 0.336 3.664 10 O -0.483 6.483 11 N -0.328 5.328 12 C 0.060 3.940 13 C -0.197 4.197 14 C 0.070 3.930 15 C -0.136 4.136 16 C -0.092 4.092 17 C -0.011 4.011 18 F -0.122 7.122 19 C -0.097 4.097 20 C -0.171 4.171 21 C 0.307 3.693 22 O -0.457 6.457 23 N -0.303 5.303 24 H 0.089 0.911 25 H 0.244 0.756 26 H 0.142 0.858 27 H 0.202 0.798 28 H 0.115 0.885 29 H 0.149 0.851 30 H 0.151 0.849 31 H 0.133 0.867 32 H 0.243 0.757 Dipole moment (debyes) X Y Z Total from point charges 2.107 -15.487 0.328 15.633 hybrid contribution 0.682 1.905 -0.245 2.038 sum 2.789 -13.582 0.083 13.865 Atomic orbital electron populations 1.70115 1.09505 1.29622 1.34516 1.26972 0.95554 1.04899 0.91009 0.85017 0.78232 0.74411 0.80422 1.17745 1.19788 1.17744 1.21374 0.95101 0.89504 1.53862 0.88916 1.18709 0.87245 0.83512 0.76969 1.90558 1.15235 1.86822 1.55679 1.43711 1.10530 1.03897 1.74695 1.17976 0.93726 0.86243 0.96077 1.20805 0.96413 0.97656 1.04820 1.17560 0.85558 0.93431 0.96459 1.19553 0.95959 0.94263 1.03777 1.20865 0.93260 0.96585 0.98537 1.17499 0.84748 0.94212 1.04656 1.91425 1.41660 1.97242 1.81878 1.20474 0.90415 0.92717 1.06095 1.21804 0.98929 0.96262 1.00141 1.21662 0.82613 0.83715 0.81333 1.90737 1.23788 1.79853 1.51283 1.43754 1.15235 1.23999 1.47342 0.91071 0.75605 0.85813 0.79817 0.88497 0.85059 0.84923 0.86673 0.75675 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -47.19 11.82 21.85 0.26 -46.94 16 2 C 0.03 1.74 5.50 85.33 0.47 2.21 16 3 Si 1.00 38.97 29.56 68.60 2.03 41.00 16 4 H -0.25 -9.31 7.11 99.48 0.71 -8.60 16 5 H -0.27 -10.30 7.11 99.48 0.71 -9.60 16 6 H -0.25 -9.32 7.11 99.48 0.71 -8.61 16 7 C -0.56 -30.48 9.53 24.78 0.24 -30.24 16 8 H 0.09 4.47 7.85 -2.91 -0.02 4.44 16 9 C 0.53 29.40 7.54 86.29 0.65 30.05 16 10 O -0.60 -37.41 12.17 -4.53 -0.06 -37.46 16 11 N -0.69 -31.04 5.29 -307.44 -1.63 -32.66 16 12 C 0.16 6.50 6.43 38.33 0.25 6.75 16 13 C -0.17 -7.13 8.58 22.52 0.19 -6.94 16 14 C 0.17 5.33 6.50 38.14 0.25 5.58 16 15 C -0.13 -3.09 5.66 -19.69 -0.11 -3.20 16 16 C -0.07 -1.68 9.65 22.27 0.22 -1.47 16 17 C 0.01 0.39 7.31 22.54 0.16 0.55 16 18 F -0.14 -4.48 16.81 44.97 0.76 -3.73 16 19 C -0.06 -0.84 6.00 29.81 0.18 -0.66 16 20 C -0.13 -2.26 6.07 29.74 0.18 -2.08 16 21 C 0.52 14.60 7.72 87.62 0.68 15.28 16 22 O -0.58 -20.44 17.91 -3.08 -0.06 -20.49 16 23 N -0.66 -20.48 5.36 -304.06 -1.63 -22.11 16 24 H 0.28 14.78 8.29 -92.71 -0.77 14.02 16 25 H 0.41 16.17 8.43 -92.71 -0.78 15.39 16 26 H 0.12 6.20 5.78 -2.91 -0.02 6.19 16 27 H 0.18 2.54 8.06 -2.91 -0.02 2.51 16 28 H 0.10 1.14 8.14 -2.38 -0.02 1.12 16 29 H 0.13 0.87 8.06 -2.39 -0.02 0.85 16 30 H 0.13 1.64 8.14 -2.39 -0.02 1.62 16 31 H 0.12 1.78 8.14 -2.39 -0.02 1.76 16 32 H 0.41 13.11 8.83 -92.71 -0.82 12.30 16 Total: -1.00 -75.81 286.47 2.63 -73.18 By element: Atomic # 1 Polarization: 33.78 SS G_CDS: -0.39 Total: 33.39 kcal Atomic # 6 Polarization: 12.48 SS G_CDS: 3.35 Total: 15.83 kcal Atomic # 7 Polarization: -98.71 SS G_CDS: -3.00 Total: -101.71 kcal Atomic # 8 Polarization: -57.85 SS G_CDS: -0.11 Total: -57.96 kcal Atomic # 9 Polarization: -4.48 SS G_CDS: 0.76 Total: -3.73 kcal Atomic # 14 Polarization: 38.97 SS G_CDS: 2.03 Total: 41.00 kcal Total: -75.81 2.63 -73.18 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000346361666.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.754 kcal (2) G-P(sol) polarization free energy of solvation -75.810 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.564 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.635 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.175 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.930 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.79 seconds