Wall clock time and date at job start Mon Mar 30 2020 23:51:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45206 * 1 3 3 C 1.34846 * 117.00096 * 2 1 4 4 O 1.21557 * 119.99900 * 0.02562 * 3 2 1 5 5 C 1.46994 * 120.00104 * 179.97438 * 3 2 1 6 6 C 1.37706 * 125.79823 * 180.02562 * 5 3 2 7 7 C 1.39919 * 106.85465 * 180.02562 * 6 5 3 8 8 C 1.37741 * 106.85753 * 0.02562 * 7 6 5 9 9 C 1.47057 * 125.80090 * 180.02562 * 8 7 6 10 10 O 1.21681 * 119.99565 * 354.57406 * 9 8 7 11 11 N 1.34773 * 120.00221 * 174.57314 * 9 8 7 12 12 C 1.36568 * 119.99608 * 184.11590 * 11 9 8 13 13 H 1.08002 * 120.00345 * 319.97480 * 12 11 9 14 14 C 1.39243 * 119.99819 * 139.98605 * 12 11 9 15 15 N 1.31245 * 120.00077 * 163.52376 * 14 12 11 16 16 Si 1.86795 * 120.00207 * 343.51737 * 14 12 11 17 17 H 1.48496 * 109.47271 * 90.13573 * 16 14 12 18 18 H 1.48497 * 109.47274 * 210.14150 * 16 14 12 19 19 H 1.48503 * 109.46970 * 330.13576 * 16 14 12 20 20 C 1.46499 * 120.00138 * 4.11233 * 11 9 8 21 21 C 1.47194 * 109.47037 * 84.60147 * 20 11 9 22 22 N 4.61260 * 132.59174 * 222.67746 * 2 1 3 23 23 O 1.34557 * 108.40999 * 359.97438 * 8 7 6 24 24 H 1.09002 * 109.47235 * 179.97438 * 1 2 3 25 25 H 1.08998 * 109.46843 * 299.99300 * 1 2 3 26 26 H 1.08999 * 109.46887 * 59.99464 * 1 2 3 27 27 H 1.08000 * 126.57060 * 0.27202 * 6 5 3 28 28 H 1.08002 * 126.57435 * 180.02562 * 7 6 5 29 29 H 0.96997 * 120.00211 * 180.02562 * 15 14 12 30 30 H 1.09001 * 109.46843 * 204.60470 * 20 11 9 31 31 H 1.09001 * 109.47266 * 324.60340 * 20 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0643 1.2015 0.0000 4 8 1.4022 2.2209 0.0005 5 6 3.5322 1.2784 0.0006 6 6 4.2781 2.4359 0.0011 7 6 5.6235 2.0516 0.0009 8 6 5.6455 0.6744 -0.0003 9 6 6.8517 -0.1667 -0.0004 10 8 7.9509 0.3460 -0.0990 11 7 6.7399 -1.5054 0.1087 12 6 7.8618 -2.2796 0.1932 13 1 8.7245 -2.0485 -0.4140 14 6 7.8932 -3.3671 1.0622 15 7 8.8139 -4.2920 0.9230 16 14 6.6251 -3.5097 2.4263 17 1 5.4453 -4.2619 1.9289 18 1 7.2195 -4.2287 3.5817 19 1 6.2023 -2.1516 2.8530 20 6 5.4150 -2.1299 0.1366 21 6 4.9405 -2.3357 -1.2415 22 7 4.5737 -2.4965 -2.3019 23 8 4.3757 0.2291 -0.0003 24 1 -0.3634 -1.0277 -0.0005 25 1 -0.3633 0.5137 0.8900 26 1 -0.3633 0.5139 -0.8899 27 1 3.8976 3.4467 0.0054 28 1 6.4805 2.7088 0.0016 29 1 8.8356 -5.0498 1.5281 30 1 5.4772 -3.0911 0.6469 31 1 4.7185 -1.4810 0.6676 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000346783837.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:51:19 Heat of formation + Delta-G solvation = -41.615911 kcal Electronic energy + Delta-G solvation = -21405.750190 eV Core-core repulsion = 17849.235147 eV Total energy + Delta-G solvation = -3556.515043 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 278.078 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -42.67078 -40.32542 -39.01006 -36.70196 -36.44793 -34.99908 -33.08562 -32.45459 -30.53278 -28.08323 -27.92945 -25.96130 -23.82900 -21.95112 -20.99577 -19.99857 -18.83535 -18.46654 -17.26031 -17.08271 -16.97366 -16.61543 -15.94939 -15.64924 -14.62491 -14.15084 -14.04241 -13.87565 -13.42340 -13.38569 -13.15815 -13.00732 -12.88537 -12.58274 -12.45924 -12.38200 -12.03803 -11.59971 -11.11901 -11.05779 -11.03909 -10.56396 -10.20546 -10.06688 -9.59888 -9.23702 -8.70277 -8.31503 -6.73214 -4.36917 0.55054 1.90452 2.14007 2.76653 2.78580 2.86196 2.95676 3.00925 3.02621 3.24251 3.62391 3.82699 4.03665 4.37643 4.63518 4.78594 4.79695 4.88956 4.97601 5.01914 5.29512 5.34712 5.47486 5.49939 5.75717 5.89574 6.03126 6.26006 6.65867 7.12577 7.47351 7.79719 7.95311 8.04646 8.48017 8.83888 9.18871 10.36124 Molecular weight = 278.08amu Principal moments of inertia in cm(-1) A = 0.019778 B = 0.006480 C = 0.005693 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1415.364710 B = 4319.837798 C = 4916.786604 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.347 6.347 3 C 0.556 3.444 4 O -0.492 6.492 5 C -0.077 4.077 6 C -0.101 4.101 7 C -0.165 4.165 8 C 0.007 3.993 9 C 0.533 3.467 10 O -0.519 6.519 11 N -0.434 5.434 12 C -0.323 4.323 13 H 0.119 0.881 14 C 0.067 3.933 15 N -0.838 5.838 16 Si 0.865 3.135 17 H -0.263 1.263 18 H -0.275 1.275 19 H -0.252 1.252 20 C 0.166 3.834 21 C 0.212 3.788 22 N -0.433 5.433 23 O -0.142 6.142 24 H 0.105 0.895 25 H 0.066 0.934 26 H 0.065 0.935 27 H 0.168 0.832 28 H 0.171 0.829 29 H 0.283 0.717 30 H 0.120 0.880 31 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.496 6.596 3.111 15.341 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.263 6.263 3 C 0.401 3.599 4 O -0.381 6.381 5 C -0.128 4.128 6 C -0.121 4.121 7 C -0.186 4.186 8 C -0.048 4.048 9 C 0.321 3.679 10 O -0.399 6.399 11 N -0.155 5.155 12 C -0.450 4.450 13 H 0.136 0.864 14 C -0.143 4.143 15 N -0.471 5.471 16 Si 0.690 3.310 17 H -0.190 1.190 18 H -0.200 1.200 19 H -0.176 1.176 20 C 0.040 3.960 21 C -0.108 4.108 22 N -0.112 5.112 23 O -0.037 6.037 24 H 0.123 0.877 25 H 0.085 0.915 26 H 0.084 0.916 27 H 0.185 0.815 28 H 0.189 0.811 29 H 0.094 0.906 30 H 0.137 0.863 31 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -13.675 6.364 1.559 15.164 hybrid contribution -0.676 -0.079 1.123 1.313 sum -14.351 6.285 2.681 15.895 Atomic orbital electron populations 1.23358 0.75399 1.04178 1.02731 1.86681 1.23937 1.31744 1.83897 1.19296 0.85491 0.82072 0.73045 1.90908 1.64426 1.35932 1.46872 1.21142 0.87855 0.86764 1.17072 1.22118 0.92099 0.98448 0.99420 1.22093 0.97513 0.93338 1.05646 1.23864 0.82143 0.95160 1.03653 1.16794 0.85101 0.81415 0.84555 1.90790 1.24131 1.71800 1.53227 1.43465 1.04714 1.04097 1.63210 1.19174 0.93319 1.08253 1.24239 0.86406 1.25487 0.97110 0.94925 0.96803 1.69588 1.33178 1.08615 1.35751 0.87151 0.81060 0.80170 0.82596 1.18978 1.20026 1.17578 1.19822 0.87415 1.02419 0.86348 1.29455 0.92936 0.92924 0.95436 1.80934 1.09286 1.09104 1.11830 1.84369 1.15671 1.33947 1.69734 0.87652 0.91533 0.91605 0.81482 0.81148 0.90622 0.86257 0.86066 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.33 10.57 101.05 1.07 1.40 16 2 O -0.35 -4.61 10.58 -42.35 -0.45 -5.06 16 3 C 0.56 8.04 7.95 34.28 0.27 8.31 16 4 O -0.49 -7.45 16.66 -19.31 -0.32 -7.77 16 5 C -0.08 -1.17 7.21 -36.23 -0.26 -1.43 16 6 C -0.10 -1.37 10.64 -39.15 -0.42 -1.79 16 7 C -0.17 -2.52 10.65 -39.13 -0.42 -2.93 16 8 C 0.01 0.14 6.80 -36.19 -0.25 -0.11 16 9 C 0.53 11.69 7.55 -12.69 -0.10 11.59 16 10 O -0.52 -12.81 16.75 5.21 0.09 -12.72 16 11 N -0.43 -9.73 2.13 -119.31 -0.25 -9.98 16 12 C -0.32 -8.24 9.37 -15.07 -0.14 -8.38 16 13 H 0.12 3.38 7.92 -52.49 -0.42 2.97 16 14 C 0.07 1.65 5.36 -17.43 -0.09 1.55 16 15 N -0.84 -21.80 13.95 55.51 0.77 -21.03 16 16 Si 0.86 17.44 24.95 -169.99 -4.24 13.20 16 17 H -0.26 -4.79 6.52 56.52 0.37 -4.42 16 18 H -0.27 -5.56 7.11 56.52 0.40 -5.15 16 19 H -0.25 -4.91 7.11 56.52 0.40 -4.51 16 20 C 0.17 3.16 4.05 -6.83 -0.03 3.14 16 21 C 0.21 4.22 14.93 -20.84 -0.31 3.90 16 22 N -0.43 -9.08 18.52 42.06 0.78 -8.30 16 23 O -0.14 -2.39 6.65 3.86 0.03 -2.37 16 24 H 0.11 0.68 8.14 -51.93 -0.42 0.26 16 25 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 26 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 27 H 0.17 1.80 8.06 -52.49 -0.42 1.38 16 28 H 0.17 2.31 8.06 -52.49 -0.42 1.89 16 29 H 0.28 6.73 8.30 -40.82 -0.34 6.39 16 30 H 0.12 2.24 3.30 -51.93 -0.17 2.07 16 31 H 0.12 2.02 5.26 -51.93 -0.27 1.75 16 LS Contribution 291.31 15.07 4.39 4.39 Total: -1.00 -29.51 291.31 -2.02 -31.53 By element: Atomic # 1 Polarization: 5.00 SS G_CDS: -2.14 Total: 2.86 kcal Atomic # 6 Polarization: 15.92 SS G_CDS: -0.67 Total: 15.25 kcal Atomic # 7 Polarization: -40.61 SS G_CDS: 1.30 Total: -39.31 kcal Atomic # 8 Polarization: -27.26 SS G_CDS: -0.66 Total: -27.92 kcal Atomic # 14 Polarization: 17.44 SS G_CDS: -4.24 Total: 13.20 kcal Total LS contribution 4.39 Total: 4.39 kcal Total: -29.51 -2.02 -31.53 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000346783837.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.084 kcal (2) G-P(sol) polarization free energy of solvation -29.512 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.596 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.020 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.532 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.616 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds