Wall clock time and date at job start Mon Mar 30 2020 23:51:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45206 * 1 3 3 C 1.34846 * 117.00096 * 2 1 4 4 O 1.21557 * 119.99900 * 0.02562 * 3 2 1 5 5 C 1.46994 * 120.00104 * 179.97438 * 3 2 1 6 6 C 1.37706 * 125.79823 * 180.02562 * 5 3 2 7 7 C 1.39919 * 106.85465 * 180.02562 * 6 5 3 8 8 C 1.37741 * 106.85753 * 0.02562 * 7 6 5 9 9 C 1.47057 * 125.80090 * 180.02562 * 8 7 6 10 10 O 1.21681 * 119.99565 * 354.57406 * 9 8 7 11 11 N 1.34773 * 120.00221 * 174.57314 * 9 8 7 12 12 C 1.36568 * 119.99608 * 184.11590 * 11 9 8 13 13 H 1.08002 * 120.00345 * 319.97480 * 12 11 9 14 14 C 1.39243 * 119.99819 * 139.98605 * 12 11 9 15 15 N 1.31245 * 120.00077 * 163.52376 * 14 12 11 16 16 Si 1.86795 * 120.00207 * 343.51737 * 14 12 11 17 17 H 1.48496 * 109.47271 * 90.13573 * 16 14 12 18 18 H 1.48497 * 109.47274 * 210.14150 * 16 14 12 19 19 H 1.48503 * 109.46970 * 330.13576 * 16 14 12 20 20 C 1.46499 * 120.00138 * 4.11233 * 11 9 8 21 21 C 1.47194 * 109.47037 * 84.60147 * 20 11 9 22 22 N 4.61260 * 132.59174 * 222.67746 * 2 1 3 23 23 O 1.34557 * 108.40999 * 359.97438 * 8 7 6 24 24 H 1.09002 * 109.47235 * 179.97438 * 1 2 3 25 25 H 1.08998 * 109.46843 * 299.99300 * 1 2 3 26 26 H 1.08999 * 109.46887 * 59.99464 * 1 2 3 27 27 H 1.08000 * 126.57060 * 0.27202 * 6 5 3 28 28 H 1.08002 * 126.57435 * 180.02562 * 7 6 5 29 29 H 0.96997 * 120.00211 * 180.02562 * 15 14 12 30 30 H 1.09001 * 109.46843 * 204.60470 * 20 11 9 31 31 H 1.09001 * 109.47266 * 324.60340 * 20 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0643 1.2015 0.0000 4 8 1.4022 2.2209 0.0005 5 6 3.5322 1.2784 0.0006 6 6 4.2781 2.4359 0.0011 7 6 5.6235 2.0516 0.0009 8 6 5.6455 0.6744 -0.0003 9 6 6.8517 -0.1667 -0.0004 10 8 7.9509 0.3460 -0.0990 11 7 6.7399 -1.5054 0.1087 12 6 7.8618 -2.2796 0.1932 13 1 8.7245 -2.0485 -0.4140 14 6 7.8932 -3.3671 1.0622 15 7 8.8139 -4.2920 0.9230 16 14 6.6251 -3.5097 2.4263 17 1 5.4453 -4.2619 1.9289 18 1 7.2195 -4.2287 3.5817 19 1 6.2023 -2.1516 2.8530 20 6 5.4150 -2.1299 0.1366 21 6 4.9405 -2.3357 -1.2415 22 7 4.5737 -2.4965 -2.3019 23 8 4.3757 0.2291 -0.0003 24 1 -0.3634 -1.0277 -0.0005 25 1 -0.3633 0.5137 0.8900 26 1 -0.3633 0.5139 -0.8899 27 1 3.8976 3.4467 0.0054 28 1 6.4805 2.7088 0.0016 29 1 8.8356 -5.0498 1.5281 30 1 5.4772 -3.0911 0.6469 31 1 4.7185 -1.4810 0.6676 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000346783837.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:51:17 Heat of formation + Delta-G solvation = -61.043184 kcal Electronic energy + Delta-G solvation = -21406.592619 eV Core-core repulsion = 17849.235147 eV Total energy + Delta-G solvation = -3557.357473 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 278.078 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -43.94892 -41.40435 -40.68763 -38.13901 -37.73108 -36.71280 -34.48639 -34.14320 -31.81087 -29.64290 -28.95322 -27.50667 -25.16441 -23.23198 -22.21026 -21.45300 -20.52442 -19.68644 -18.78940 -18.43314 -18.17419 -17.91275 -17.44806 -17.00300 -16.17386 -15.72977 -15.46824 -15.27085 -14.86274 -14.59208 -14.33275 -14.32676 -14.22386 -14.15233 -14.06193 -13.67615 -13.20208 -13.11161 -12.84215 -12.20493 -12.14136 -11.91587 -11.81938 -11.37087 -11.25448 -10.95731 -10.21067 -9.94404 -8.58176 -6.32969 -0.70245 0.64780 0.98382 1.20957 1.32328 1.40108 1.47241 1.62819 1.67528 1.70718 2.01634 2.14448 2.51683 2.71346 3.07093 3.37450 3.64101 3.71802 3.90271 4.04910 4.22761 4.31894 4.33914 4.46247 4.69321 4.74770 5.04295 5.08764 5.27240 5.50117 5.89951 6.23749 6.36698 6.41282 6.62564 6.96431 7.40444 8.56251 Molecular weight = 278.08amu Principal moments of inertia in cm(-1) A = 0.019778 B = 0.006480 C = 0.005693 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1415.364710 B = 4319.837798 C = 4916.786604 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.357 6.357 3 C 0.559 3.441 4 O -0.498 6.498 5 C -0.072 4.072 6 C -0.088 4.088 7 C -0.138 4.138 8 C -0.029 4.029 9 C 0.540 3.460 10 O -0.559 6.559 11 N -0.447 5.447 12 C -0.346 4.346 13 H 0.062 0.938 14 C 0.025 3.975 15 N -0.889 5.889 16 Si 0.921 3.079 17 H -0.223 1.223 18 H -0.274 1.274 19 H -0.238 1.238 20 C 0.170 3.830 21 C 0.222 3.778 22 N -0.453 5.453 23 O -0.148 6.148 24 H 0.132 0.868 25 H 0.076 0.924 26 H 0.069 0.931 27 H 0.202 0.798 28 H 0.187 0.813 29 H 0.289 0.711 30 H 0.127 0.873 31 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.984 7.855 4.357 19.213 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.273 6.273 3 C 0.404 3.596 4 O -0.388 6.388 5 C -0.124 4.124 6 C -0.107 4.107 7 C -0.158 4.158 8 C -0.084 4.084 9 C 0.330 3.670 10 O -0.441 6.441 11 N -0.168 5.168 12 C -0.474 4.474 13 H 0.080 0.920 14 C -0.181 4.181 15 N -0.524 5.524 16 Si 0.741 3.259 17 H -0.148 1.148 18 H -0.200 1.200 19 H -0.161 1.161 20 C 0.046 3.954 21 C -0.097 4.097 22 N -0.132 5.132 23 O -0.044 6.044 24 H 0.150 0.850 25 H 0.095 0.905 26 H 0.088 0.912 27 H 0.219 0.781 28 H 0.204 0.796 29 H 0.099 0.901 30 H 0.144 0.856 31 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges -17.187 7.612 2.784 19.003 hybrid contribution 0.298 -0.294 0.632 0.758 sum -16.889 7.319 3.416 18.721 Atomic orbital electron populations 1.23736 0.73008 1.06267 1.03475 1.86667 1.26306 1.30996 1.83357 1.19171 0.85096 0.82419 0.72889 1.90912 1.64417 1.36271 1.47228 1.21616 0.88381 0.86862 1.15501 1.22481 0.90763 0.99578 0.97911 1.22425 0.98996 0.92174 1.02203 1.23052 0.81662 0.95355 1.08291 1.17188 0.86012 0.81516 0.82312 1.90752 1.26330 1.72758 1.54278 1.43409 1.05055 1.04237 1.64084 1.18690 0.93564 1.09902 1.25199 0.92034 1.26265 0.99558 0.93705 0.98620 1.69701 1.35863 1.09641 1.37182 0.86261 0.79545 0.81376 0.78732 1.14776 1.19984 1.16067 1.20024 0.86087 1.03220 0.86118 1.29622 0.92343 0.92254 0.95511 1.80933 1.10110 1.09889 1.12303 1.84276 1.15197 1.34706 1.70216 0.85026 0.90482 0.91201 0.78079 0.79605 0.90115 0.85560 0.83059 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.40 10.57 113.37 1.20 1.60 16 2 O -0.36 -8.29 10.58 -56.20 -0.59 -8.88 16 3 C 0.56 14.22 7.95 70.12 0.56 14.77 16 4 O -0.50 -13.27 16.66 19.65 0.33 -12.94 16 5 C -0.07 -1.95 7.21 24.44 0.18 -1.77 16 6 C -0.09 -2.04 10.64 22.55 0.24 -1.80 16 7 C -0.14 -3.79 10.65 22.56 0.24 -3.55 16 8 C -0.03 -1.01 6.80 24.47 0.17 -0.84 16 9 C 0.54 23.94 7.55 86.56 0.65 24.59 16 10 O -0.56 -28.55 16.75 -4.29 -0.07 -28.62 16 11 N -0.45 -20.30 2.13 -649.63 -1.38 -21.68 16 12 C -0.35 -18.58 9.37 84.20 0.79 -17.79 16 13 H 0.06 3.88 7.92 -2.91 -0.02 3.86 16 14 C 0.02 1.24 5.36 85.02 0.46 1.70 16 15 N -0.89 -48.26 13.95 21.71 0.30 -47.96 16 16 Si 0.92 34.76 24.95 68.60 1.71 36.47 16 17 H -0.22 -7.02 6.52 99.48 0.65 -6.38 16 18 H -0.27 -10.32 7.11 99.48 0.71 -9.61 16 19 H -0.24 -8.40 7.11 99.48 0.71 -7.69 16 20 C 0.17 6.25 4.05 84.57 0.34 6.59 16 21 C 0.22 8.61 14.93 89.47 1.34 9.94 16 22 N -0.45 -18.67 18.52 19.97 0.37 -18.30 16 23 O -0.15 -4.60 6.65 -7.95 -0.05 -4.66 16 24 H 0.13 1.19 8.14 -2.39 -0.02 1.17 16 25 H 0.08 0.96 8.14 -2.39 -0.02 0.94 16 26 H 0.07 0.96 8.14 -2.39 -0.02 0.94 16 27 H 0.20 3.26 8.06 -2.91 -0.02 3.24 16 28 H 0.19 4.52 8.06 -2.91 -0.02 4.50 16 29 H 0.29 14.18 8.30 -92.71 -0.77 13.41 16 30 H 0.13 4.45 3.30 -2.39 -0.01 4.44 16 31 H 0.15 4.62 5.26 -2.39 -0.01 4.61 16 Total: -1.00 -67.61 291.31 7.91 -59.70 By element: Atomic # 1 Polarization: 12.29 SS G_CDS: 1.14 Total: 13.44 kcal Atomic # 6 Polarization: 27.29 SS G_CDS: 6.15 Total: 33.44 kcal Atomic # 7 Polarization: -87.24 SS G_CDS: -0.71 Total: -87.95 kcal Atomic # 8 Polarization: -54.71 SS G_CDS: -0.39 Total: -55.10 kcal Atomic # 14 Polarization: 34.76 SS G_CDS: 1.71 Total: 36.47 kcal Total: -67.61 7.91 -59.70 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000346783837.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.344 kcal (2) G-P(sol) polarization free energy of solvation -67.608 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.952 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.909 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.699 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.043 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds