Wall clock time and date at job start Tue Mar 31 2020 00:58:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38698 * 119.78460 * 2 1 4 4 C 1.37690 * 120.49463 * 179.97438 * 3 2 1 5 5 C 1.39726 * 119.78081 * 0.06602 * 4 3 2 6 6 N 1.35876 * 133.37426 * 179.63337 * 5 4 3 7 7 C 1.31056 * 109.61724 * 179.91794 * 6 5 4 8 8 S 1.76201 * 125.07453 * 180.14919 * 7 6 5 9 9 C 1.81000 * 100.00221 * 0.26982 * 8 7 6 10 10 C 1.53000 * 109.47191 * 180.02562 * 9 8 7 11 11 H 1.08997 * 109.46679 * 305.00098 * 10 9 8 12 12 O 1.42904 * 109.47164 * 64.99716 * 10 9 8 13 13 C 1.50703 * 109.47141 * 184.99914 * 10 9 8 14 14 H 1.08002 * 119.99944 * 359.97438 * 13 10 9 15 15 C 1.37871 * 119.99760 * 179.97438 * 13 10 9 16 16 N 1.31522 * 119.99756 * 179.97438 * 15 13 10 17 17 Si 1.86796 * 120.00434 * 0.02562 * 15 13 10 18 18 H 1.48500 * 109.47250 * 89.99729 * 17 15 13 19 19 H 1.48498 * 109.47089 * 209.99960 * 17 15 13 20 20 H 1.48501 * 109.46988 * 329.99640 * 17 15 13 21 21 N 1.36640 * 109.84292 * 0.38630 * 7 6 5 22 22 H 0.96993 * 126.37829 * 179.75164 * 21 7 6 23 23 C 1.38537 * 107.23588 * 359.76229 * 21 7 6 24 24 C 1.37986 * 119.78315 * 180.02562 * 2 1 3 25 25 H 1.08999 * 109.47433 * 269.97993 * 1 2 3 26 26 H 1.09001 * 109.46873 * 29.98146 * 1 2 3 27 27 H 1.09001 * 109.47029 * 149.97912 * 1 2 3 28 28 H 1.07995 * 119.75053 * 359.97438 * 3 2 1 29 29 H 1.08002 * 120.11144 * 179.97438 * 4 3 2 30 30 H 1.09007 * 109.46688 * 300.00079 * 9 8 7 31 31 H 1.09003 * 109.47144 * 59.99422 * 9 8 7 32 32 H 0.96705 * 113.99519 * 60.00228 * 12 10 9 33 33 H 0.96993 * 120.00272 * 179.97438 * 16 15 13 34 34 H 1.07995 * 120.06730 * 359.97438 * 24 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1959 1.2038 0.0000 4 6 3.5727 1.2208 0.0005 5 6 4.2817 0.0168 -0.0003 6 7 5.6062 -0.2862 -0.0064 7 6 5.7599 -1.5877 -0.0024 8 16 7.3108 -2.4241 -0.0040 9 6 8.4336 -1.0045 -0.0037 10 6 9.8814 -1.4994 -0.0056 11 1 10.0353 -2.1755 0.8353 12 8 10.1467 -2.1910 -1.2277 13 6 10.8146 -0.3226 0.1184 14 1 10.4151 0.6782 0.1910 15 6 12.1785 -0.5237 0.1394 16 7 12.9929 0.5034 0.2471 17 14 12.8695 -2.2545 0.0132 18 1 13.0913 -2.5961 -1.4149 19 1 14.1593 -2.3271 0.7456 20 1 11.9074 -3.2162 0.6086 21 7 4.5379 -2.1990 -0.0022 22 1 4.3728 -3.1548 -0.0030 23 6 3.5788 -1.1993 -0.0008 24 6 2.1924 -1.1976 -0.0005 25 1 -0.3634 -0.0004 1.0276 26 1 -0.3633 0.8902 -0.5136 27 1 -0.3633 -0.8898 -0.5142 28 1 1.6484 2.1346 -0.0004 29 1 4.1029 2.1617 0.0001 30 1 8.2554 -0.4001 -0.8932 31 1 8.2565 -0.4014 0.8868 32 1 10.0294 -1.6490 -2.0199 33 1 13.9524 0.3620 0.2623 34 1 1.6500 -2.1315 -0.0005 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000352165972.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:58:48 Heat of formation + Delta-G solvation = 9.052587 kcal Electronic energy + Delta-G solvation = -18133.007054 eV Core-core repulsion = 15157.275128 eV Total energy + Delta-G solvation = -2975.731926 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 278.083 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.89807 -37.70331 -36.43971 -33.28719 -32.37419 -31.52835 -30.10368 -29.93226 -26.72777 -25.62393 -23.30396 -21.97772 -21.34467 -20.81674 -18.42353 -17.60996 -16.98452 -16.24414 -15.42606 -15.06451 -14.92744 -14.52518 -14.43074 -14.13559 -13.98497 -13.70816 -13.33894 -12.86410 -12.44246 -12.08980 -12.01193 -11.64859 -11.54302 -11.47598 -11.10393 -10.80583 -10.73185 -10.31631 -10.00604 -9.84973 -9.37233 -8.86201 -8.74459 -8.69943 -8.29414 -7.25708 -6.21863 -4.36265 0.82707 1.31753 1.42827 2.49453 2.64238 3.11042 3.39790 3.43615 3.55135 3.77907 4.37088 4.41845 4.71837 4.83175 4.99349 5.05937 5.20529 5.28116 5.37398 5.49550 5.54048 5.62225 5.73888 5.76107 5.85505 5.94866 6.24804 6.43997 6.46648 6.51773 6.78089 7.07368 7.12294 7.37066 7.75646 8.17115 8.68349 8.86255 9.38411 10.87887 Molecular weight = 278.08amu Principal moments of inertia in cm(-1) A = 0.044038 B = 0.003527 C = 0.003308 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 635.666893 B = 7935.892883 C = 8461.734632 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C -0.078 4.078 3 C -0.127 4.127 4 C -0.063 4.063 5 C 0.056 3.944 6 N -0.492 5.492 7 C 0.272 3.728 8 S -0.021 6.021 9 C -0.098 4.098 10 C 0.206 3.794 11 H 0.071 0.929 12 O -0.582 6.582 13 C -0.559 4.559 14 H 0.079 0.921 15 C 0.085 3.915 16 N -0.886 5.886 17 Si 0.913 3.087 18 H -0.276 1.276 19 H -0.303 1.303 20 H -0.267 1.267 21 N -0.590 5.590 22 H 0.424 0.576 23 C 0.053 3.947 24 C -0.113 4.113 25 H 0.069 0.931 26 H 0.067 0.933 27 H 0.064 0.936 28 H 0.128 0.872 29 H 0.130 0.870 30 H 0.093 0.907 31 H 0.099 0.901 32 H 0.366 0.634 33 H 0.268 0.732 34 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.576 -3.984 -0.856 22.941 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.080 4.080 3 C -0.148 4.148 4 C -0.084 4.084 5 C -0.064 4.064 6 N -0.217 5.217 7 C -0.102 4.102 8 S 0.212 5.788 9 C -0.247 4.247 10 C 0.146 3.854 11 H 0.089 0.911 12 O -0.389 6.389 13 C -0.598 4.598 14 H 0.097 0.903 15 C -0.120 4.120 16 N -0.523 5.523 17 Si 0.743 3.257 18 H -0.202 1.202 19 H -0.231 1.231 20 H -0.192 1.192 21 N -0.204 5.204 22 H 0.263 0.737 23 C -0.059 4.059 24 C -0.134 4.134 25 H 0.088 0.912 26 H 0.086 0.914 27 H 0.083 0.917 28 H 0.146 0.854 29 H 0.148 0.852 30 H 0.111 0.889 31 H 0.118 0.882 32 H 0.213 0.787 33 H 0.078 0.922 34 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -21.362 -4.945 -0.440 21.932 hybrid contribution -0.658 -0.019 -0.365 0.753 sum -22.021 -4.964 -0.805 22.588 Atomic orbital electron populations 1.20730 0.90795 1.02712 1.02261 1.19561 0.95795 0.92138 1.00495 1.20747 0.93231 0.97544 1.03256 1.20294 0.93094 0.95748 0.99226 1.19153 0.89368 0.93137 1.04782 1.71122 1.16665 1.09870 1.24002 1.25924 0.92066 0.91529 1.00699 1.85917 0.88611 1.13052 1.91260 1.24607 0.96999 0.95828 1.07231 1.19792 0.86889 0.93647 0.85062 0.91122 1.86407 1.91653 1.44033 1.16791 1.21333 0.90793 0.93539 1.54129 0.90263 1.24992 0.96815 0.97830 0.92401 1.69937 1.03709 1.30866 1.47752 0.86250 0.76883 0.84049 0.78564 1.20212 1.23131 1.19208 1.42968 1.04242 1.08921 1.64309 0.73685 1.18910 0.91453 0.88983 1.06509 1.19703 0.89271 0.98352 1.06098 0.91214 0.91373 0.91732 0.85414 0.85165 0.88871 0.88218 0.78674 0.92246 0.86189 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.72 10.00 36.00 0.36 -0.36 16 2 C -0.08 -0.78 5.88 -104.55 -0.62 -1.39 16 3 C -0.13 -1.35 9.66 -39.61 -0.38 -1.74 16 4 C -0.06 -0.85 10.10 -39.23 -0.40 -1.24 16 5 C 0.06 0.90 7.22 -84.68 -0.61 0.29 16 6 N -0.49 -8.97 10.57 -10.90 -0.12 -9.08 16 7 C 0.27 4.48 8.20 -88.43 -0.73 3.76 16 8 S -0.02 -0.36 22.09 -107.50 -2.37 -2.73 16 9 C -0.10 -1.92 4.76 37.16 0.18 -1.74 16 10 C 0.21 4.65 2.29 -27.88 -0.06 4.59 16 11 H 0.07 1.66 7.20 -51.93 -0.37 1.29 16 12 O -0.58 -12.65 10.79 -35.23 -0.38 -13.03 16 13 C -0.56 -15.06 9.34 -34.44 -0.32 -15.38 16 14 H 0.08 2.31 7.99 -52.49 -0.42 1.89 16 15 C 0.09 2.40 5.47 -17.82 -0.10 2.30 16 16 N -0.89 -26.38 13.96 55.43 0.77 -25.61 16 17 Si 0.91 22.55 26.18 -169.99 -4.45 18.10 16 18 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 19 H -0.30 -7.46 7.11 56.52 0.40 -7.06 16 20 H -0.27 -6.51 6.54 56.52 0.37 -6.14 16 21 N -0.59 -7.93 6.28 -10.57 -0.07 -8.00 16 22 H 0.42 4.24 8.96 -40.82 -0.37 3.88 16 23 C 0.05 0.74 7.29 -83.84 -0.61 0.13 16 24 C -0.11 -1.25 9.70 -39.52 -0.38 -1.63 16 25 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 26 H 0.07 0.38 8.08 -51.93 -0.42 -0.04 16 27 H 0.06 0.37 8.08 -51.93 -0.42 -0.05 16 28 H 0.13 1.01 8.06 -52.49 -0.42 0.58 16 29 H 0.13 1.60 8.06 -52.49 -0.42 1.18 16 30 H 0.09 1.84 8.14 -51.91 -0.42 1.41 16 31 H 0.10 2.02 8.14 -51.91 -0.42 1.60 16 32 H 0.37 6.98 9.04 45.56 0.41 7.39 16 33 H 0.27 7.47 8.31 -40.82 -0.34 7.13 16 34 H 0.12 1.03 8.06 -52.49 -0.42 0.60 16 LS Contribution 306.80 15.07 4.62 4.62 Total: -1.00 -31.94 306.80 -8.95 -40.89 By element: Atomic # 1 Polarization: 10.54 SS G_CDS: -3.29 Total: 7.25 kcal Atomic # 6 Polarization: -8.74 SS G_CDS: -3.67 Total: -12.42 kcal Atomic # 7 Polarization: -43.28 SS G_CDS: 0.59 Total: -42.69 kcal Atomic # 8 Polarization: -12.65 SS G_CDS: -0.38 Total: -13.03 kcal Atomic # 14 Polarization: 22.55 SS G_CDS: -4.45 Total: 18.10 kcal Atomic # 16 Polarization: -0.36 SS G_CDS: -2.37 Total: -2.73 kcal Total LS contribution 4.62 Total: 4.62 kcal Total: -31.94 -8.95 -40.89 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000352165972.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.942 kcal (2) G-P(sol) polarization free energy of solvation -31.939 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.004 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.951 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.890 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.053 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds