Wall clock time and date at job start Tue Mar 31 2020 00:58:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38698 * 119.78460 * 2 1 4 4 C 1.37690 * 120.49463 * 179.97438 * 3 2 1 5 5 C 1.39726 * 119.78081 * 0.06602 * 4 3 2 6 6 N 1.35876 * 133.37426 * 179.63337 * 5 4 3 7 7 C 1.31056 * 109.61724 * 179.91794 * 6 5 4 8 8 S 1.76201 * 125.07453 * 180.14919 * 7 6 5 9 9 C 1.81000 * 100.00221 * 0.26982 * 8 7 6 10 10 C 1.53000 * 109.47191 * 180.02562 * 9 8 7 11 11 H 1.08997 * 109.46679 * 305.00098 * 10 9 8 12 12 O 1.42904 * 109.47164 * 64.99716 * 10 9 8 13 13 C 1.50703 * 109.47141 * 184.99914 * 10 9 8 14 14 H 1.08002 * 119.99944 * 359.97438 * 13 10 9 15 15 C 1.37871 * 119.99760 * 179.97438 * 13 10 9 16 16 N 1.31522 * 119.99756 * 179.97438 * 15 13 10 17 17 Si 1.86796 * 120.00434 * 0.02562 * 15 13 10 18 18 H 1.48500 * 109.47250 * 89.99729 * 17 15 13 19 19 H 1.48498 * 109.47089 * 209.99960 * 17 15 13 20 20 H 1.48501 * 109.46988 * 329.99640 * 17 15 13 21 21 N 1.36640 * 109.84292 * 0.38630 * 7 6 5 22 22 H 0.96993 * 126.37829 * 179.75164 * 21 7 6 23 23 C 1.38537 * 107.23588 * 359.76229 * 21 7 6 24 24 C 1.37986 * 119.78315 * 180.02562 * 2 1 3 25 25 H 1.08999 * 109.47433 * 269.97993 * 1 2 3 26 26 H 1.09001 * 109.46873 * 29.98146 * 1 2 3 27 27 H 1.09001 * 109.47029 * 149.97912 * 1 2 3 28 28 H 1.07995 * 119.75053 * 359.97438 * 3 2 1 29 29 H 1.08002 * 120.11144 * 179.97438 * 4 3 2 30 30 H 1.09007 * 109.46688 * 300.00079 * 9 8 7 31 31 H 1.09003 * 109.47144 * 59.99422 * 9 8 7 32 32 H 0.96705 * 113.99519 * 60.00228 * 12 10 9 33 33 H 0.96993 * 120.00272 * 179.97438 * 16 15 13 34 34 H 1.07995 * 120.06730 * 359.97438 * 24 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1959 1.2038 0.0000 4 6 3.5727 1.2208 0.0005 5 6 4.2817 0.0168 -0.0003 6 7 5.6062 -0.2862 -0.0064 7 6 5.7599 -1.5877 -0.0024 8 16 7.3108 -2.4241 -0.0040 9 6 8.4336 -1.0045 -0.0037 10 6 9.8814 -1.4994 -0.0056 11 1 10.0353 -2.1755 0.8353 12 8 10.1467 -2.1910 -1.2277 13 6 10.8146 -0.3226 0.1184 14 1 10.4151 0.6782 0.1910 15 6 12.1785 -0.5237 0.1394 16 7 12.9929 0.5034 0.2471 17 14 12.8695 -2.2545 0.0132 18 1 13.0913 -2.5961 -1.4149 19 1 14.1593 -2.3271 0.7456 20 1 11.9074 -3.2162 0.6086 21 7 4.5379 -2.1990 -0.0022 22 1 4.3728 -3.1548 -0.0030 23 6 3.5788 -1.1993 -0.0008 24 6 2.1924 -1.1976 -0.0005 25 1 -0.3634 -0.0004 1.0276 26 1 -0.3633 0.8902 -0.5136 27 1 -0.3633 -0.8898 -0.5142 28 1 1.6484 2.1346 -0.0004 29 1 4.1029 2.1617 0.0001 30 1 8.2554 -0.4001 -0.8932 31 1 8.2565 -0.4014 0.8868 32 1 10.0294 -1.6490 -2.0199 33 1 13.9524 0.3620 0.2623 34 1 1.6500 -2.1315 -0.0005 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000352165972.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:58:48 Heat of formation + Delta-G solvation = -13.272184 kcal Electronic energy + Delta-G solvation = -18133.975129 eV Core-core repulsion = 15157.275128 eV Total energy + Delta-G solvation = -2976.700001 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 278.083 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -42.96885 -38.60604 -38.26566 -34.50109 -34.35351 -32.45429 -31.79659 -30.91709 -27.92406 -27.25267 -24.32101 -23.19079 -22.62368 -22.20932 -19.74604 -19.38373 -17.99259 -17.42381 -16.98317 -16.61961 -16.26457 -16.19856 -15.90625 -15.15374 -14.91144 -14.89553 -14.74903 -14.31799 -13.64823 -13.55948 -13.08116 -12.94410 -12.85351 -12.69664 -12.39606 -12.38928 -12.00443 -11.83809 -11.69396 -11.30641 -11.09517 -10.90253 -10.59725 -9.93245 -9.26540 -8.47463 -8.39288 -6.57074 -0.17352 0.02510 0.48387 1.03617 1.42550 1.45359 1.53559 1.59163 2.06955 2.36194 2.79958 2.94018 3.39161 3.84032 3.89753 3.99529 4.03542 4.13393 4.19344 4.33739 4.38929 4.69061 4.80109 4.86403 4.93526 5.03100 5.23978 5.24939 5.31361 5.33220 5.49169 5.62129 5.90324 6.02928 6.16949 6.55639 6.63959 7.04653 7.23091 8.74636 Molecular weight = 278.08amu Principal moments of inertia in cm(-1) A = 0.044038 B = 0.003527 C = 0.003308 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 635.666893 B = 7935.892883 C = 8461.734632 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C -0.068 4.068 3 C -0.118 4.118 4 C -0.085 4.085 5 C 0.011 3.989 6 N -0.529 5.529 7 C 0.250 3.750 8 S 0.016 5.984 9 C -0.094 4.094 10 C 0.216 3.784 11 H 0.069 0.931 12 O -0.580 6.580 13 C -0.562 4.562 14 H 0.042 0.958 15 C 0.034 3.966 16 N -0.933 5.933 17 Si 0.975 3.025 18 H -0.271 1.271 19 H -0.301 1.301 20 H -0.258 1.258 21 N -0.575 5.575 22 H 0.439 0.561 23 C 0.047 3.953 24 C -0.116 4.116 25 H 0.083 0.917 26 H 0.082 0.918 27 H 0.078 0.922 28 H 0.159 0.841 29 H 0.128 0.872 30 H 0.085 0.915 31 H 0.084 0.916 32 H 0.379 0.621 33 H 0.271 0.729 34 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.689 -5.774 -1.155 26.355 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.071 4.071 3 C -0.138 4.138 4 C -0.106 4.106 5 C -0.109 4.109 6 N -0.255 5.255 7 C -0.125 4.125 8 S 0.248 5.752 9 C -0.244 4.244 10 C 0.157 3.843 11 H 0.087 0.913 12 O -0.388 6.388 13 C -0.602 4.602 14 H 0.060 0.940 15 C -0.167 4.167 16 N -0.571 5.571 17 Si 0.801 3.199 18 H -0.196 1.196 19 H -0.229 1.229 20 H -0.182 1.182 21 N -0.191 5.191 22 H 0.281 0.719 23 C -0.065 4.065 24 C -0.137 4.137 25 H 0.101 0.899 26 H 0.101 0.899 27 H 0.097 0.903 28 H 0.176 0.824 29 H 0.146 0.854 30 H 0.104 0.896 31 H 0.103 0.897 32 H 0.228 0.772 33 H 0.080 0.920 34 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -24.507 -6.747 -0.749 25.430 hybrid contribution 0.049 0.670 -0.284 0.729 sum -24.459 -6.077 -1.032 25.223 Atomic orbital electron populations 1.20826 0.87774 1.04201 1.03519 1.20091 0.97847 0.91377 0.97759 1.21159 0.92146 0.99398 1.01119 1.20531 0.94453 0.95089 1.00503 1.19589 0.89000 0.95103 1.07169 1.70996 1.18646 1.11075 1.24771 1.25716 0.92749 0.91554 1.02438 1.85491 0.87888 1.09972 1.91839 1.24160 0.96737 0.97238 1.06245 1.19457 0.87730 0.91764 0.85383 0.91344 1.86335 1.91713 1.43858 1.16919 1.21610 0.91736 0.93682 1.53127 0.93955 1.25813 0.97269 1.01422 0.92206 1.70055 1.04199 1.33085 1.49806 0.85278 0.76297 0.79566 0.78724 1.19640 1.22894 1.18202 1.42823 1.03162 1.09692 1.63435 0.71885 1.19230 0.92488 0.88145 1.06592 1.20130 0.88038 1.00230 1.05318 0.89864 0.89917 0.90347 0.82361 0.85404 0.89586 0.89704 0.77225 0.91989 0.83198 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.93 10.00 71.23 0.71 -0.21 16 2 C -0.07 -1.14 5.88 -19.81 -0.12 -1.25 16 3 C -0.12 -2.23 9.66 22.25 0.21 -2.01 16 4 C -0.09 -2.27 10.10 22.50 0.23 -2.04 16 5 C 0.01 0.36 7.22 39.42 0.28 0.64 16 6 N -0.53 -19.86 10.57 -188.39 -1.99 -21.85 16 7 C 0.25 8.26 8.20 179.58 1.47 9.73 16 8 S 0.02 0.51 22.09 -56.49 -1.25 -0.73 16 9 C -0.09 -3.79 4.76 71.98 0.34 -3.44 16 10 C 0.22 9.83 2.29 29.85 0.07 9.90 16 11 H 0.07 3.17 7.20 -2.39 -0.02 3.15 16 12 O -0.58 -24.57 10.79 -148.98 -1.61 -26.17 16 13 C -0.56 -31.23 9.34 25.60 0.24 -30.99 16 14 H 0.04 2.60 7.99 -2.91 -0.02 2.58 16 15 C 0.03 1.94 5.47 84.65 0.46 2.40 16 16 N -0.93 -57.10 13.96 21.45 0.30 -56.80 16 17 Si 0.97 46.42 26.18 68.60 1.80 48.21 16 18 H -0.27 -12.61 7.11 99.48 0.71 -11.90 16 19 H -0.30 -14.13 7.11 99.48 0.71 -13.43 16 20 H -0.26 -11.80 6.54 99.48 0.65 -11.15 16 21 N -0.57 -14.85 6.28 -187.35 -1.18 -16.03 16 22 H 0.44 8.00 8.96 -92.71 -0.83 7.17 16 23 C 0.05 1.25 7.29 38.72 0.28 1.53 16 24 C -0.12 -2.23 9.70 22.31 0.22 -2.01 16 25 H 0.08 0.58 8.14 -2.39 -0.02 0.56 16 26 H 0.08 0.53 8.08 -2.39 -0.02 0.51 16 27 H 0.08 0.52 8.08 -2.39 -0.02 0.50 16 28 H 0.16 1.94 8.06 -2.91 -0.02 1.92 16 29 H 0.13 3.26 8.06 -2.91 -0.02 3.24 16 30 H 0.09 3.52 8.14 -2.39 -0.02 3.50 16 31 H 0.08 3.62 8.14 -2.39 -0.02 3.60 16 32 H 0.38 14.12 9.04 -74.05 -0.67 13.45 16 33 H 0.27 15.48 8.31 -92.71 -0.77 14.71 16 34 H 0.15 1.93 8.06 -2.91 -0.02 1.91 16 Total: -1.00 -70.86 306.80 0.07 -70.80 By element: Atomic # 1 Polarization: 20.74 SS G_CDS: -0.41 Total: 20.32 kcal Atomic # 6 Polarization: -22.16 SS G_CDS: 4.41 Total: -17.76 kcal Atomic # 7 Polarization: -91.80 SS G_CDS: -2.87 Total: -94.67 kcal Atomic # 8 Polarization: -24.57 SS G_CDS: -1.61 Total: -26.17 kcal Atomic # 14 Polarization: 46.42 SS G_CDS: 1.80 Total: 48.21 kcal Atomic # 16 Polarization: 0.51 SS G_CDS: -1.25 Total: -0.73 kcal Total: -70.86 0.07 -70.80 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000352165972.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.526 kcal (2) G-P(sol) polarization free energy of solvation -70.865 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.339 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.066 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.798 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.272 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds