Wall clock time and date at job start Tue Mar 31 2020 00:48:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86799 * 119.99682 * 2 1 4 4 H 1.48499 * 109.47136 * 270.00114 * 3 2 1 5 5 H 1.48499 * 109.47548 * 29.99893 * 3 2 1 6 6 H 1.48499 * 109.47078 * 150.00403 * 3 2 1 7 7 C 1.37875 * 120.00116 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99744 * 179.97438 * 7 2 1 9 9 C 1.50703 * 120.00213 * 0.02562 * 7 2 1 10 10 C 1.52997 * 109.46940 * 180.02562 * 9 7 2 11 11 C 1.53004 * 109.47000 * 179.97438 * 10 9 7 12 12 N 1.46499 * 109.47198 * 179.97438 * 11 10 9 13 13 C 1.34777 * 119.99665 * 180.27868 * 12 11 10 14 14 O 1.21733 * 120.00174 * 359.72127 * 13 12 11 15 15 C 1.46411 * 119.99805 * 179.72456 * 13 12 11 16 16 C 1.35775 * 124.96270 * 179.71941 * 15 13 12 17 17 C 1.38871 * 115.18851 * 179.82855 * 16 15 13 18 18 N 1.39746 * 139.91140 * 180.11726 * 17 16 15 19 19 H 0.96997 * 125.63827 * 0.34224 * 18 17 16 20 20 C 1.36217 * 108.73072 * 180.32155 * 18 17 16 21 21 C 1.34509 * 109.29556 * 359.97438 * 20 18 17 22 22 C 1.38235 * 113.39191 * 0.45280 * 17 16 15 23 23 S 1.75620 * 124.95995 * 0.02562 * 15 13 12 24 24 H 0.97000 * 120.00572 * 359.97438 * 1 2 3 25 25 H 1.08995 * 109.46839 * 59.99740 * 9 7 2 26 26 H 1.09007 * 109.46560 * 299.99875 * 9 7 2 27 27 H 1.08995 * 109.47672 * 60.00122 * 10 9 7 28 28 H 1.09006 * 109.46819 * 299.99551 * 10 9 7 29 29 H 1.09009 * 109.46730 * 59.99606 * 11 10 9 30 30 H 1.08998 * 109.46846 * 300.00150 * 11 10 9 31 31 H 0.97001 * 119.99790 * 359.97438 * 12 11 10 32 32 H 1.08004 * 122.40066 * 0.02562 * 16 15 13 33 33 H 1.07997 * 125.35369 * 180.02562 * 20 18 17 34 34 H 1.08008 * 126.07359 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4965 2.0465 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5466 1.4402 0.6999 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1939 -0.0010 9 6 1.2511 -2.4992 -0.0017 10 6 2.2454 -3.6620 -0.0015 11 6 1.4805 -4.9871 -0.0020 12 7 2.4325 -6.1006 -0.0024 13 6 1.9833 -7.3712 -0.0086 14 8 0.7864 -7.5937 -0.0087 15 6 2.9347 -8.4840 -0.0150 16 6 2.5947 -9.7985 -0.0161 17 6 3.6632 -10.6854 -0.0264 18 7 3.9110 -12.0607 -0.0338 19 1 3.2355 -12.7567 -0.0374 20 6 5.2582 -12.2624 -0.0356 21 6 5.8857 -11.0727 -0.0303 22 6 4.8958 -10.0598 -0.0238 23 16 4.6826 -8.3135 -0.0149 24 1 -0.4851 0.8400 0.0004 25 1 0.6248 -2.5563 -0.8919 26 1 0.6241 -2.5575 0.8881 27 1 2.8714 -3.6047 0.8890 28 1 2.8727 -3.6038 -0.8910 29 1 0.8541 -5.0447 -0.8923 30 1 0.8534 -5.0450 0.8877 31 1 3.3862 -5.9232 -0.0026 32 1 1.5669 -10.1304 -0.0125 33 1 5.7458 -13.2260 -0.0414 34 1 6.9546 -10.9174 -0.0306 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000355670835.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:48:14 Heat of formation + Delta-G solvation = 17.931681 kcal Electronic energy + Delta-G solvation = -17671.454825 eV Core-core repulsion = 14696.107925 eV Total energy + Delta-G solvation = -2975.346900 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 278.083 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -41.44857 -39.45780 -35.67898 -35.01025 -33.32059 -31.35037 -31.15045 -28.65373 -26.66706 -24.29224 -22.83339 -21.69460 -20.92943 -20.69625 -19.45522 -18.61673 -16.84289 -16.39088 -15.68578 -15.55752 -15.43643 -14.87397 -14.51863 -14.43744 -13.84063 -13.78025 -13.68037 -12.99537 -12.27735 -12.19393 -11.91023 -11.83682 -11.54734 -11.09754 -10.89086 -10.72754 -10.58546 -10.06787 -9.94222 -9.85635 -9.41443 -9.11022 -8.86810 -8.35764 -8.35031 -7.89121 -6.00291 -4.03278 0.37456 1.24796 1.79088 2.18387 2.37688 2.68140 3.27677 3.32423 3.36282 3.39003 3.42385 4.45845 4.59629 4.60941 4.76093 5.06885 5.20012 5.35559 5.51310 5.62738 5.72396 5.78272 5.83224 6.16612 6.21280 6.42723 6.44610 6.60604 6.82166 7.00524 7.08523 7.62334 7.65125 7.77523 7.98452 8.27360 8.39924 9.03352 9.60871 11.11030 Molecular weight = 278.08amu Principal moments of inertia in cm(-1) A = 0.045041 B = 0.002763 C = 0.002609 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 621.511881 B =10132.775173 C =10728.519099 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.056 3.944 3 Si 0.893 3.107 4 H -0.280 1.280 5 H -0.286 1.286 6 H -0.274 1.274 7 C -0.522 4.522 8 H 0.056 0.944 9 C 0.024 3.976 10 C -0.122 4.122 11 C 0.117 3.883 12 N -0.718 5.718 13 C 0.585 3.415 14 O -0.534 6.534 15 C -0.230 4.230 16 C -0.036 4.036 17 C 0.024 3.976 18 N -0.557 5.557 19 H 0.420 0.580 20 C 0.056 3.944 21 C -0.171 4.171 22 C -0.189 4.189 23 S 0.167 5.833 24 H 0.261 0.739 25 H 0.019 0.981 26 H 0.020 0.980 27 H 0.055 0.945 28 H 0.055 0.945 29 H 0.068 0.932 30 H 0.068 0.932 31 H 0.397 0.603 32 H 0.149 0.851 33 H 0.178 0.822 34 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.720 -25.813 -0.061 28.349 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.145 4.145 3 Si 0.721 3.279 4 H -0.207 1.207 5 H -0.212 1.212 6 H -0.199 1.199 7 C -0.560 4.560 8 H 0.074 0.926 9 C -0.014 4.014 10 C -0.160 4.160 11 C -0.005 4.005 12 N -0.368 5.368 13 C 0.370 3.630 14 O -0.413 6.413 15 C -0.351 4.351 16 C -0.072 4.072 17 C -0.089 4.089 18 N -0.159 5.159 19 H 0.257 0.743 20 C -0.078 4.078 21 C -0.201 4.201 22 C -0.312 4.312 23 S 0.429 5.571 24 H 0.071 0.929 25 H 0.038 0.962 26 H 0.038 0.962 27 H 0.074 0.926 28 H 0.074 0.926 29 H 0.086 0.914 30 H 0.086 0.914 31 H 0.231 0.769 32 H 0.167 0.833 33 H 0.195 0.805 34 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges 11.538 -24.645 -0.048 27.213 hybrid contribution -0.310 -0.592 -0.021 0.669 sum 11.228 -25.237 -0.069 27.623 Atomic orbital electron populations 1.69963 1.06062 1.26686 1.50604 1.25030 0.94858 0.99310 0.95290 0.86577 0.79808 0.83416 0.78092 1.20662 1.21227 1.19874 1.21206 0.93021 0.90916 1.50879 0.92602 1.19030 0.93829 0.90796 0.97708 1.21913 0.99841 0.93200 1.01061 1.21725 0.91714 0.84744 1.02338 1.46077 1.10816 1.05607 1.74334 1.16863 0.87141 0.81952 0.76998 1.90836 1.15331 1.84555 1.50567 1.23856 0.97486 0.96886 1.16839 1.19232 0.98714 0.89610 0.99602 1.18001 0.93970 0.84000 1.12962 1.41902 1.07320 1.04790 1.61849 0.74287 1.21867 0.81766 0.99747 1.04410 1.20141 0.98390 0.89176 1.12395 1.23212 0.97333 0.97572 1.13035 1.83802 0.98528 0.98830 1.75895 0.92933 0.96216 0.96209 0.92581 0.92587 0.91391 0.91370 0.76918 0.83306 0.80516 0.83508 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.94 13.29 55.43 0.74 -26.20 16 2 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 3 Si 0.89 21.59 29.54 -169.99 -5.02 16.57 16 4 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 5 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 6 H -0.27 -6.46 7.11 56.52 0.40 -6.06 16 7 C -0.52 -14.64 9.11 -34.44 -0.31 -14.95 16 8 H 0.06 1.51 7.74 -52.49 -0.41 1.10 16 9 C 0.02 0.61 4.97 -27.88 -0.14 0.47 16 10 C -0.12 -2.42 5.27 -26.73 -0.14 -2.56 16 11 C 0.12 2.11 5.67 -4.04 -0.02 2.09 16 12 N -0.72 -11.19 5.55 -61.70 -0.34 -11.53 16 13 C 0.59 9.54 7.77 -12.97 -0.10 9.44 16 14 O -0.53 -10.45 16.77 5.16 0.09 -10.36 16 15 C -0.23 -3.10 6.38 -37.18 -0.24 -3.34 16 16 C -0.04 -0.43 9.88 -40.23 -0.40 -0.83 16 17 C 0.02 0.26 7.67 -84.02 -0.64 -0.38 16 18 N -0.56 -3.94 6.21 -10.90 -0.07 -4.00 16 19 H 0.42 1.66 8.96 -40.82 -0.37 1.29 16 20 C 0.06 0.34 11.85 -16.92 -0.20 0.14 16 21 C -0.17 -1.42 10.85 -39.61 -0.43 -1.85 16 22 C -0.19 -2.06 7.31 -38.29 -0.28 -2.34 16 23 S 0.17 1.87 22.29 -107.50 -2.40 -0.53 16 24 H 0.26 7.41 8.31 -40.82 -0.34 7.08 16 25 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 26 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 27 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 28 H 0.06 1.07 8.14 -51.93 -0.42 0.64 16 29 H 0.07 1.28 8.14 -51.92 -0.42 0.86 16 30 H 0.07 1.28 8.14 -51.93 -0.42 0.86 16 31 H 0.40 5.27 7.53 -40.82 -0.31 4.97 16 32 H 0.15 1.70 8.00 -52.48 -0.42 1.28 16 33 H 0.18 0.35 8.06 -52.49 -0.42 -0.08 16 34 H 0.15 0.92 8.06 -52.48 -0.42 0.50 16 LS Contribution 312.68 15.07 4.71 4.71 Total: -1.00 -34.09 312.68 -9.31 -43.40 By element: Atomic # 1 Polarization: 4.57 SS G_CDS: -4.02 Total: 0.55 kcal Atomic # 6 Polarization: -9.60 SS G_CDS: -3.00 Total: -12.60 kcal Atomic # 7 Polarization: -42.06 SS G_CDS: 0.33 Total: -41.74 kcal Atomic # 8 Polarization: -10.45 SS G_CDS: 0.09 Total: -10.36 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -5.02 Total: 16.57 kcal Atomic # 16 Polarization: 1.87 SS G_CDS: -2.40 Total: -0.53 kcal Total LS contribution 4.71 Total: 4.71 kcal Total: -34.09 -9.31 -43.40 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000355670835.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.334 kcal (2) G-P(sol) polarization free energy of solvation -34.090 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.244 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.313 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.402 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.932 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds