Wall clock time and date at job start Tue Mar 31 2020 00:48:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86799 * 119.99682 * 2 1 4 4 H 1.48499 * 109.47136 * 270.00114 * 3 2 1 5 5 H 1.48499 * 109.47548 * 29.99893 * 3 2 1 6 6 H 1.48499 * 109.47078 * 150.00403 * 3 2 1 7 7 C 1.37875 * 120.00116 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99744 * 179.97438 * 7 2 1 9 9 C 1.50703 * 120.00213 * 0.02562 * 7 2 1 10 10 C 1.52997 * 109.46940 * 180.02562 * 9 7 2 11 11 C 1.53004 * 109.47000 * 179.97438 * 10 9 7 12 12 N 1.46499 * 109.47198 * 179.97438 * 11 10 9 13 13 C 1.34777 * 119.99665 * 180.27868 * 12 11 10 14 14 O 1.21733 * 120.00174 * 359.72127 * 13 12 11 15 15 C 1.46411 * 119.99805 * 179.72456 * 13 12 11 16 16 C 1.35775 * 124.96270 * 179.71941 * 15 13 12 17 17 C 1.38871 * 115.18851 * 179.82855 * 16 15 13 18 18 N 1.39746 * 139.91140 * 180.11726 * 17 16 15 19 19 H 0.96997 * 125.63827 * 0.34224 * 18 17 16 20 20 C 1.36217 * 108.73072 * 180.32155 * 18 17 16 21 21 C 1.34509 * 109.29556 * 359.97438 * 20 18 17 22 22 C 1.38235 * 113.39191 * 0.45280 * 17 16 15 23 23 S 1.75620 * 124.95995 * 0.02562 * 15 13 12 24 24 H 0.97000 * 120.00572 * 359.97438 * 1 2 3 25 25 H 1.08995 * 109.46839 * 59.99740 * 9 7 2 26 26 H 1.09007 * 109.46560 * 299.99875 * 9 7 2 27 27 H 1.08995 * 109.47672 * 60.00122 * 10 9 7 28 28 H 1.09006 * 109.46819 * 299.99551 * 10 9 7 29 29 H 1.09009 * 109.46730 * 59.99606 * 11 10 9 30 30 H 1.08998 * 109.46846 * 300.00150 * 11 10 9 31 31 H 0.97001 * 119.99790 * 359.97438 * 12 11 10 32 32 H 1.08004 * 122.40066 * 0.02562 * 16 15 13 33 33 H 1.07997 * 125.35369 * 180.02562 * 20 18 17 34 34 H 1.08008 * 126.07359 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4965 2.0465 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5466 1.4402 0.6999 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1939 -0.0010 9 6 1.2511 -2.4992 -0.0017 10 6 2.2454 -3.6620 -0.0015 11 6 1.4805 -4.9871 -0.0020 12 7 2.4325 -6.1006 -0.0024 13 6 1.9833 -7.3712 -0.0086 14 8 0.7864 -7.5937 -0.0087 15 6 2.9347 -8.4840 -0.0150 16 6 2.5947 -9.7985 -0.0161 17 6 3.6632 -10.6854 -0.0264 18 7 3.9110 -12.0607 -0.0338 19 1 3.2355 -12.7567 -0.0374 20 6 5.2582 -12.2624 -0.0356 21 6 5.8857 -11.0727 -0.0303 22 6 4.8958 -10.0598 -0.0238 23 16 4.6826 -8.3135 -0.0149 24 1 -0.4851 0.8400 0.0004 25 1 0.6248 -2.5563 -0.8919 26 1 0.6241 -2.5575 0.8881 27 1 2.8714 -3.6047 0.8890 28 1 2.8727 -3.6038 -0.8910 29 1 0.8541 -5.0447 -0.8923 30 1 0.8534 -5.0450 0.8877 31 1 3.3862 -5.9232 -0.0026 32 1 1.5669 -10.1304 -0.0125 33 1 5.7458 -13.2260 -0.0414 34 1 6.9546 -10.9174 -0.0306 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000355670835.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:48:11 Heat of formation + Delta-G solvation = -5.225332 kcal Electronic energy + Delta-G solvation = -17672.458988 eV Core-core repulsion = 14696.107925 eV Total energy + Delta-G solvation = -2976.351064 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 278.083 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -42.12549 -40.75329 -37.11710 -36.03005 -35.23310 -33.12258 -31.84550 -29.78104 -28.25199 -25.64748 -24.24697 -22.62412 -22.37516 -21.64198 -20.64462 -19.41512 -18.54740 -17.77869 -17.00341 -16.81322 -16.49488 -16.42607 -15.77980 -15.38678 -15.25877 -14.92562 -14.38100 -14.25576 -13.77211 -13.67116 -13.58282 -12.97653 -12.76373 -12.56592 -12.52526 -12.39677 -11.97597 -11.69530 -11.64498 -11.28785 -11.10290 -10.67677 -10.54774 -10.25488 -9.14576 -8.62932 -8.18872 -6.30296 -0.52787 0.40971 0.94748 1.36095 1.42412 1.43890 1.54924 1.73041 1.89753 2.11731 2.29741 2.43564 3.14885 3.68575 3.94691 4.11259 4.17183 4.18679 4.22451 4.52528 4.56100 4.74654 4.91937 4.92304 4.97666 5.05980 5.15429 5.31845 5.51742 5.55972 5.70253 5.79249 5.84280 6.22472 6.37736 6.61372 6.86770 7.02253 7.39162 8.93307 Molecular weight = 278.08amu Principal moments of inertia in cm(-1) A = 0.045041 B = 0.002763 C = 0.002609 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 621.511881 B =10132.775173 C =10728.519099 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.004 4.004 3 Si 0.968 3.032 4 H -0.272 1.272 5 H -0.284 1.284 6 H -0.260 1.260 7 C -0.541 4.541 8 H 0.066 0.934 9 C 0.025 3.975 10 C -0.104 4.104 11 C 0.130 3.870 12 N -0.711 5.711 13 C 0.587 3.413 14 O -0.577 6.577 15 C -0.271 4.271 16 C -0.022 4.022 17 C -0.007 4.007 18 N -0.546 5.546 19 H 0.435 0.565 20 C 0.092 3.908 21 C -0.199 4.199 22 C -0.196 4.196 23 S 0.176 5.824 24 H 0.263 0.737 25 H -0.006 1.006 26 H -0.006 1.006 27 H 0.068 0.932 28 H 0.068 0.932 29 H 0.056 0.944 30 H 0.056 0.944 31 H 0.409 0.591 32 H 0.148 0.852 33 H 0.228 0.772 34 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.702 -27.755 -0.075 31.409 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.201 4.201 3 Si 0.792 3.208 4 H -0.198 1.198 5 H -0.210 1.210 6 H -0.184 1.184 7 C -0.579 4.579 8 H 0.085 0.915 9 C -0.013 4.013 10 C -0.142 4.142 11 C 0.006 3.994 12 N -0.361 5.361 13 C 0.375 3.625 14 O -0.460 6.460 15 C -0.391 4.391 16 C -0.059 4.059 17 C -0.120 4.120 18 N -0.148 5.148 19 H 0.276 0.724 20 C -0.043 4.043 21 C -0.228 4.228 22 C -0.319 4.319 23 S 0.439 5.561 24 H 0.072 0.928 25 H 0.012 0.988 26 H 0.012 0.988 27 H 0.087 0.913 28 H 0.087 0.913 29 H 0.074 0.926 30 H 0.075 0.925 31 H 0.246 0.754 32 H 0.165 0.835 33 H 0.244 0.756 34 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges 14.538 -26.598 -0.062 30.312 hybrid contribution -1.164 -0.221 -0.018 1.185 sum 13.374 -26.819 -0.080 29.969 Atomic orbital electron populations 1.70110 1.07932 1.27808 1.51689 1.26026 0.95763 1.03564 0.94774 0.85404 0.78676 0.78237 0.78465 1.19799 1.21004 1.18443 1.21676 0.93760 0.91986 1.50475 0.91549 1.18935 0.94374 0.92781 0.95231 1.21629 0.98574 0.91715 1.02236 1.21351 0.91728 0.84972 1.01308 1.45844 1.11034 1.04956 1.74293 1.17217 0.87109 0.82486 0.75735 1.90798 1.17262 1.85193 1.52703 1.23476 0.98380 0.96250 1.20944 1.19347 0.99273 0.89686 0.97547 1.17925 0.93265 0.85693 1.15091 1.42048 1.08480 1.03759 1.60535 0.72433 1.22719 0.80878 1.01072 0.99637 1.20579 0.99236 0.89120 1.13906 1.23639 0.98507 0.97513 1.12203 1.83583 0.96491 0.99846 1.76135 0.92799 0.98778 0.98769 0.91319 0.91304 0.92554 0.92529 0.75421 0.83484 0.75570 0.81678 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.64 13.29 21.45 0.28 -57.35 16 2 C 0.00 -0.21 5.46 84.65 0.46 0.25 16 3 Si 0.97 44.25 29.54 68.60 2.03 46.27 16 4 H -0.27 -12.04 7.11 99.48 0.71 -11.33 16 5 H -0.28 -12.81 7.11 99.48 0.71 -12.10 16 6 H -0.26 -11.25 7.11 99.48 0.71 -10.54 16 7 C -0.54 -30.58 9.11 25.60 0.23 -30.35 16 8 H 0.07 3.53 7.74 -2.91 -0.02 3.51 16 9 C 0.02 1.30 4.97 29.85 0.15 1.44 16 10 C -0.10 -4.15 5.27 30.59 0.16 -3.99 16 11 C 0.13 4.86 5.67 86.38 0.49 5.35 16 12 N -0.71 -22.63 5.55 -467.31 -2.59 -25.22 16 13 C 0.59 19.87 7.77 86.37 0.67 20.54 16 14 O -0.58 -23.76 16.77 -4.45 -0.07 -23.83 16 15 C -0.27 -7.43 6.38 23.83 0.15 -7.28 16 16 C -0.02 -0.53 9.88 21.85 0.22 -0.32 16 17 C -0.01 -0.14 7.67 38.03 0.29 0.16 16 18 N -0.55 -5.89 6.21 -188.39 -1.17 -7.06 16 19 H 0.44 1.95 8.96 -92.71 -0.83 1.12 16 20 C 0.09 0.68 11.85 83.16 0.99 1.66 16 21 C -0.20 -2.61 10.85 22.25 0.24 -2.37 16 22 C -0.20 -3.91 7.31 23.11 0.17 -3.74 16 23 S 0.18 3.85 22.29 -56.49 -1.26 2.59 16 24 H 0.26 15.24 8.31 -92.71 -0.77 14.47 16 25 H -0.01 -0.35 8.14 -2.39 -0.02 -0.37 16 26 H -0.01 -0.35 8.14 -2.38 -0.02 -0.37 16 27 H 0.07 2.58 8.14 -2.39 -0.02 2.56 16 28 H 0.07 2.58 8.14 -2.38 -0.02 2.56 16 29 H 0.06 2.23 8.14 -2.38 -0.02 2.21 16 30 H 0.06 2.24 8.14 -2.39 -0.02 2.22 16 31 H 0.41 10.84 7.53 -92.71 -0.70 10.15 16 32 H 0.15 3.46 8.00 -2.91 -0.02 3.44 16 33 H 0.23 -0.64 8.06 -2.91 -0.02 -0.66 16 34 H 0.17 1.48 8.06 -2.91 -0.02 1.46 16 Total: -1.00 -75.98 312.68 1.05 -74.94 By element: Atomic # 1 Polarization: 8.71 SS G_CDS: -0.39 Total: 8.32 kcal Atomic # 6 Polarization: -22.88 SS G_CDS: 4.22 Total: -18.66 kcal Atomic # 7 Polarization: -86.16 SS G_CDS: -3.48 Total: -89.63 kcal Atomic # 8 Polarization: -23.76 SS G_CDS: -0.07 Total: -23.83 kcal Atomic # 14 Polarization: 44.25 SS G_CDS: 2.03 Total: 46.27 kcal Atomic # 16 Polarization: 3.85 SS G_CDS: -1.26 Total: 2.59 kcal Total: -75.98 1.05 -74.94 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000355670835.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.710 kcal (2) G-P(sol) polarization free energy of solvation -75.983 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.273 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.048 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.935 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.225 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds